View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_323 (Length: 213)
Name: NF0154_2D_low_323
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_323 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 9e-63; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 59 - 196
Target Start/End: Original strand, 28390630 - 28390767
Alignment:
| Q |
59 |
ccttgtttggtccaaataaaatgtgcatggtttttgagcttaacaattattctttgacttataattttttcagttggttgttgataatggcattatttct |
158 |
Q |
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| T |
28390630 |
ccttgtttggtccaaataaaatgtgcttggtttttgaccttaacaattattcttttacttataattttttcagttggttgttgataatggcattgtttct |
28390729 |
T |
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| Q |
159 |
gtgtctatggcaagaccagagggatacatccttggaat |
196 |
Q |
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| T |
28390730 |
gtgtctatggcaagaccagagggatacatccttggaat |
28390767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28390603 - 28390540
Alignment:
| Q |
1 |
tttaatttctaataattaaattaaacttgacaaaatgcaaaaaagtcagctagtatcaccttgt |
64 |
Q |
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| T |
28390603 |
tttaatttctaataattaaattaaacttgacaaaaagccaaaaagtcagctagtatcaccttgt |
28390540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 28382139 - 28382239
Alignment:
| Q |
81 |
gtgcatggtttttgagcttaacaattattctttgacttataattttttcagttggttgttgataatggcattatttctgtgtctatggcaagaccagagg |
180 |
Q |
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| T |
28382139 |
gtgcttggtttttgaccttaacaaatattctttgacttacatatttttcagttggttattgacaatggcattgtttctgtgactttgtcaagacccgagg |
28382238 |
T |
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| Q |
181 |
g |
181 |
Q |
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| T |
28382239 |
g |
28382239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 28413228 - 28413167
Alignment:
| Q |
98 |
ttaacaattattctttgacttataattttttcagttggttgttgataatggcattatttctgt |
160 |
Q |
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| T |
28413228 |
ttaacaattattctttgactt-taattttttcagttagttgttgacaatggcattgtttctgt |
28413167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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