View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_328 (Length: 212)
Name: NF0154_2D_low_328
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_328 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 25707502 - 25707636
Alignment:
| Q |
17 |
catcacagcatagataagaggaggaacaatactcgtatctgtatagaaac--aaccaaacaaacatcaatgtaaaaatcacattcggagacaaaaactag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||| |
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| T |
25707502 |
catcacagcatagataagaggaggaacaatactcgtatctgtatagaaacaaaaccaaacaaacatcgatgtcagaatcacattcggagacaaaaactag |
25707601 |
T |
|
| Q |
115 |
acatcctagttccaaacatgcacatagtgtaatac |
149 |
Q |
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||||| | || |||||||||||||||||| |||| |
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| T |
25707602 |
acatcttgatttcaaacatgcacatagtgtgatac |
25707636 |
T |
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