View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_333 (Length: 212)
Name: NF0154_2D_low_333
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_333 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 7177613 - 7177414
Alignment:
| Q |
1 |
gcattaacaatgtacttaacaatgtacctgattgtgtggttggtcttcacacggatcggataagggatgttcttgttctgccacatcttctgcgccaact |
100 |
Q |
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| T |
7177613 |
gcattaacaatgtacttaacaatgtacctgattgtgtggttggtcttcacacggatcggataagggatgttcttgttctgccacatcttctgcaccaact |
7177514 |
T |
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| Q |
101 |
tgttcttgattctgaaggtcttgtgtgatggcattttcatttttcacctccgagatgcctgaggactgcaccaagcatggttgtaaaccctaacaccaaa |
200 |
Q |
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| T |
7177513 |
tgttcttgattctgaaggtcttgtgtgatggcattttcatttttcacctccgagatgcctgaggactgcaccaagcatggttgtaaaccctaacaccaaa |
7177414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 46493589 - 46493408
Alignment:
| Q |
16 |
ttaacaatgtacctgattgtgtggttggtcttcacacggatcggataagggatgttcttgttctgccacatcttctgcgccaacttgttcttgattctga |
115 |
Q |
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| T |
46493589 |
ttaacaatgtatttgatggtgtggttggtcttcacacggatcaagtaaggaatgtccttgttcttcctcatcttctgcaccaacttcttcttgattctca |
46493490 |
T |
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| Q |
116 |
aggtcttgtgtgatggcattttcatttttcacctccgagatgcctgaggactgcaccaagcatggttgtaaaccctaacacc |
197 |
Q |
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| T |
46493489 |
aggtcttgtgtgacgacgttttcaattctcacctccgagatgcttgaggactgcaccgagcatgcttgtaaaccctaacacc |
46493408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 46491564 - 46491383
Alignment:
| Q |
16 |
ttaacaatgtacctgattgtgtggttggtcttcacacggatcggataagggatgttcttgttctgccacatcttctgcgccaacttgttcttgattctga |
115 |
Q |
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| T |
46491564 |
ttaacaatgtacatgatggtgtggttggtcttcatacggatcgggtaagggatgtccttgttcttcctcatcttatgcaccaacttcttcttgattctca |
46491465 |
T |
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| Q |
116 |
aggtcttgtgtgatggcattttcatttttcacctccgagatgcctgaggactgcaccaagcatggttgtaaaccctaacacc |
197 |
Q |
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| T |
46491464 |
aggttttgtgtgacggcattttcaatactcaccacctagatgcttaaggactgcaccgagcatgcttgtaaaccctaacacc |
46491383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 46493815 - 46493986
Alignment:
| Q |
16 |
ttaacaatgtacctgattgtgtggttggtcttcacacggatcggataagggatgttcttgttctgccacatcttctgcgccaacttgttcttgattctga |
115 |
Q |
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| T |
46493815 |
ttaacaatgtatctgatggtgtggttggtcttcatatggatcgagtaaggaatgtccttgttcttcctcatcttctgcaccaacttcttcttgattctca |
46493914 |
T |
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| Q |
116 |
aggtcttgtgtgatggcattttcatttttcacctccgagatgcctgaggactgcaccaagcatggttgtaaa |
187 |
Q |
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| T |
46493915 |
aggtcttgtgtgacaacattttcaattctcacctccgagatgtctgaggattgcatcgagcatgcttgtaaa |
46493986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 46491945 - 46492124
Alignment:
| Q |
16 |
ttaacaatgtacctgattgtgtggttggtcttcacacggatcggataagggatgttcttgttctgccacatcttctgcgccaacttgttcttgattctga |
115 |
Q |
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| T |
46491945 |
ttaacaatgtacctaatggtgtggttggtcttcatacggatcaggtaagggatgtccgtgttcttactcatcttttgcaccaacttcttcttgattctca |
46492044 |
T |
|
| Q |
116 |
aggtcttgtgtgatggcattttcatttttcacctccgagatgcctgaggactgcaccaagcatggttgtaaaccctaaca |
195 |
Q |
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| T |
46492045 |
agatcttgtgtgacggcattttcaatactcacctcctagatgtttaaggactgcatcgagcatgcttgtaaaccctaaca |
46492124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 7167531 - 7167336
Alignment:
| Q |
1 |
gcattaacaatgtacttaacaatgtacctgattgtgtggttggtcttcacacggatcggataagggatgttcttgttctgccacatcttctgcgccaact |
100 |
Q |
| |
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|||||| |||||||||| ||||| ||||||| ||||||||||| ||| ||||||| | |||| ||||| |||||||| || | |||| || | |||| |
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| T |
7167531 |
gcattaccaatgtactttacaatc-acctgatgttgtggttggtcctcatacggatcaggtaagagatgtccttgttcttcctcgtcttttggacgaact |
7167433 |
T |
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| Q |
101 |
tgttcttgattctgaaggtcttgtgtgatggcattttcatttttcacctccgagatgcctgaggactgcaccaagcatggttgtaaaccctaacacc |
197 |
Q |
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| ||||||||| |||||||||||||||| | |||||||| | ||||||| |||||| ||||||||||||| | |||| |||||||||||| |||| |
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| T |
7167432 |
tcttcttgattatgaaggtcttgtgtgacgacattttcaactctcacctctgagatgaatgaggactgcaccgaacatgcttgtaaaccctagcacc |
7167336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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