View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_334 (Length: 211)

Name: NF0154_2D_low_334
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_334
NF0154_2D_low_334
[»] chr4 (9 HSPs)
chr4 (1-196)||(27451260-27451455)
chr4 (1-191)||(48623614-48623804)
chr4 (1-187)||(23907389-23907575)
chr4 (1-190)||(1778104-1778293)
chr4 (1-161)||(435267-435427)
chr4 (1-150)||(53703655-53703804)
chr4 (109-196)||(16001137-16001225)
chr4 (109-188)||(39707472-39707552)
chr4 (124-183)||(56224776-56224835)
[»] chr2 (7 HSPs)
chr2 (2-189)||(45368714-45368901)
chr2 (1-191)||(24584693-24584886)
chr2 (1-191)||(8179798-8179988)
chr2 (1-183)||(452703-452885)
chr2 (35-182)||(13148336-13148482)
chr2 (18-191)||(37281111-37281284)
chr2 (14-174)||(33251337-33251497)
[»] chr8 (5 HSPs)
chr8 (1-192)||(15216358-15216547)
chr8 (1-191)||(36544157-36544347)
chr8 (1-170)||(42855102-42855271)
chr8 (103-183)||(13588720-13588800)
chr8 (1-42)||(6184814-6184855)
[»] chr6 (7 HSPs)
chr6 (1-192)||(20428724-20428915)
chr6 (1-189)||(5260335-5260523)
chr6 (1-189)||(30669902-30670089)
chr6 (2-191)||(6082394-6082594)
chr6 (1-121)||(9705850-9705970)
chr6 (15-191)||(26290789-26290964)
chr6 (1-85)||(3629377-3629461)
[»] chr1 (9 HSPs)
chr1 (1-191)||(43241468-43241658)
chr1 (1-191)||(49348489-49348679)
chr1 (1-189)||(8670925-8671113)
chr1 (1-187)||(51441851-51442037)
chr1 (1-180)||(29173616-29173795)
chr1 (103-184)||(11681833-11681914)
chr1 (33-183)||(32405580-32405729)
chr1 (32-161)||(35829509-35829638)
chr1 (1-165)||(45833593-45833755)
[»] chr7 (10 HSPs)
chr7 (1-192)||(32629616-32629803)
chr7 (1-191)||(36650999-36651189)
chr7 (1-191)||(11592694-11592884)
chr7 (1-191)||(33350893-33351083)
chr7 (1-181)||(39907466-39907646)
chr7 (17-191)||(24178298-24178472)
chr7 (1-191)||(38896622-38896812)
chr7 (1-122)||(22346586-22346707)
chr7 (1-79)||(38606156-38606234)
chr7 (1-46)||(46356938-46356983)
[»] chr5 (8 HSPs)
chr5 (1-191)||(2076561-2076751)
chr5 (4-191)||(20317996-20318183)
chr5 (1-191)||(24177529-24177719)
chr5 (1-191)||(1288615-1288805)
chr5 (1-185)||(26970-27153)
chr5 (111-181)||(22832091-22832161)
chr5 (110-183)||(25937109-25937183)
chr5 (40-174)||(756080-756214)
[»] chr3 (5 HSPs)
chr3 (1-191)||(51448796-51448986)
chr3 (1-191)||(52137833-52138023)
chr3 (1-191)||(38849107-38849297)
chr3 (19-191)||(27916583-27916753)
chr3 (1-184)||(3368775-3368958)
[»] scaffold0113 (1 HSPs)
scaffold0113 (16-187)||(13360-13531)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-144)||(30520-30663)
[»] scaffold0045 (1 HSPs)
scaffold0045 (33-121)||(90209-90297)
[»] scaffold0140 (1 HSPs)
scaffold0140 (59-129)||(14931-15001)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 27451260 - 27451455
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||  |||||    
27451260 ttttttatccgtccgatatcgctccatcatgcgtcaaagtaagtagttcgcttccatagtcgacctccgaggaataaaaccaaataagttatccgtaaca 27451359  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgt 196  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
27451360 tgagtctcttttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattatgt 27451455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 48623614 - 48623804
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || | |||||||||| |||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||     
48623614 ttttttatccgtcctatatcgctccatcacgcgtcgaactaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaact 48623713  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48623714 cgagtcttctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 48623804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 23907389 - 23907575
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||     
23907389 ttttttatccgttcgatatcgctccatcacgcgtcgaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattgattatccgtaact 23907488  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 187  Q
     ||||||  |||||||||||||  || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
23907489 cgagtctcctttcttagtcttctttcgatcaccctttcccataactttatggtatgactcattagcttaattcccctataattcgcg 23907575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 1778104 - 1778293
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| |||| ||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||  ||||||  ||||     
1778104 ttttttatccgtccgatatcgctccatcacacgtcgaagtaagtagattgcttccatagtcaacctcccaggcataaaatcaaattggttatccgtaact 1778203  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaa 190  Q
     ||||||  |||||||||||||  || || |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
1778204 cgagtctcctttcttagtcttctttcgatcaccctttcccataattccatggtatgactcattagcttaattctcctataattcgcgcaa 1778293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 435427 - 435267
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||  |||||||||||||||||||| |  ||||||||||| |||||||||||||||||||||||  ||||||  ||||     
435427 ttttttatccgtccgatatcgctctatcacgcgtcgaagtaagtagattgcttccatagtcaacctcccaggcataaaaccaaattggttatccgtaact 435328  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactca 161  Q
     ||| ||  |||||||||||||  || || |||||||||||||||||||||||||||||||    
435327 cgagcctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactca 435267  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 53703804 - 53703655
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||| ||| || |||||||||||| |||||||||||||||||||| |  ||||||||||||||||| ||| ||||||| ||| |  ||||||| ||||     
53703804 tttttcatccgtccgatatcgctccgtcacgcgtcgaagtaagtagattgcttccatagtcgacctctcagacataaaatcaatttggttatctgtaacc 53703705  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcat 150  Q
     ||||||  |||||||||||||  || || ||||||||||||||||||||    
53703704 cgagtctcctttcttagtcttctttcgatcaccctttcccataacttcat 53703655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 16001137 - 16001225
Alignment:
109 ttttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcatt-agcttaattcccctataattcgcgcaatgatgt 196  Q
    ||||||||||||||| | ||| |||||||||||||||||||| |||||||||||| |  ||||||| |||||||||| |||||| ||||    
16001137 ttttcttagtcttcgttaaatcaccctttcccataacttcatagtatgactcattaattttaattctcctataattcacgcaattatgt 16001225  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 39707552 - 39707472
Alignment:
109 ttttcttagtcttcgctcaattaccctttccc-ataacttcatggtatgactcattagcttaattcccctataattcgcgc 188  Q
    ||||||||||||||| ||||| ||| ||| || ||||||||||||||||||||||||| |||||||| |||||||| ||||    
39707552 ttttcttagtcttcgttcaatcacctttttcctataacttcatggtatgactcattagtttaattcctctataattggcgc 39707472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 56224835 - 56224776
Alignment:
124 ctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 183  Q
    |||||||||| ||||||| |||||||||  |||||||||||| |||||||| ||||||||    
56224835 ctcaattaccatttcccacaacttcatgacatgactcattagtttaattcctctataatt 56224776  T

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Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 45368714 - 45368901
Alignment:
2 tttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacat 101  Q
    |||||||| || |||||||||||| |||||||||||||||||||  || ||||||||||| |||||||||||||||| ||||||  ||||||  ||||||    
45368714 tttttatccgtccgatatcgctccatcacgcgtcgaagtaagtatatcgcttccatagtcaacctcccaggcataaagccaaattggttatccgtaacat 45368813  T
102 gagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca 189  Q
    |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
45368814 gagtctcttttcttagtcttcgttcaattaccctttcccataatttcatggtatgactcattagcttaattcccctataattcgcgca 45368901  T

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Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 24584693 - 24584886
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| |||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||| |||||||| ||||     
24584693 ttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagatcgcttccatactcgacctcccagacataaaaccaaatcagttatctataact 24584792  T
101 tgagtctattttcttagtcttcgctc---aattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||| | ||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
24584793 cgagtctcctttcttagtctttgttcaataatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgtgcaat 24584886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 8179988 - 8179798
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| ||||||||| |||||||||| |  ||| |||||||||||||||||||||||||||||||  ||||||  ||||     
8179988 ttttttatccgtccgatatcgctccatcacgcgtcaaagtaagtagattgctttcatagtcgacctcccaggcataaaaccaaattggttatccgtaact 8179889  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||||  || || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
8179888 cgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgacttattagcttaattcccctataattcgcgcaat 8179798  T

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Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 452703 - 452885
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||     
452703 ttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaact 452802  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 183  Q
     ||||||  |||||||||||||  || || |||||||| | ||||||||||||||||||||||||||||||||||||||||||    
452803 cgagtctcctttcttagtcttctttcgatcaccctttctcgtaacttcatggtatgactcattagcttaattcccctataatt 452885  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 13148482 - 13148336
Alignment:
35 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 134  Q
    |||||||||||| || |||||||||| |||  || |||||||||| |||||  ||||||  ||||  |||||| ||||||||||||||  ||||| ||||    
13148482 cgaagtaagtagatcgcttccatagttgaca-cctaggcataaaatcaaattggttatcgataactcgagtctcttttcttagtcttcattcaatcaccc 13148384  T
135 tttcccataacttcatggtatgactcattagcttaattcccctataat 182  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||    
13148383 tttcccataacttcatggtaagactcattagtttaattcccctataat 13148336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 37281284 - 37281111
Alignment:
18 atcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttag 117  Q
    |||||| | |||| |||| |||||||||| ||||||| ||||||||| || |||| ||||||||||||  ||||||  |||| | ||| | ||| |||||    
37281284 atcgcttcatcacacgtcaaagtaagtagatcacttctatagtcgacttctcaggtataaaaccaaattggttatcagtaacttaagtttgtttacttag 37281185  T
118 tcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
    |||||| ||||| ||  |||  |||||||||||||||||| ||||||| ||||||| |||||||||||||||||    
37281184 tcttcgttcaatcactttttatcataacttcatggtatgattcattagtttaattctcctataattcgcgcaat 37281111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 33251497 - 33251337
Alignment:
14 cgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttc 113  Q
    |||||||||||| |||| ||||||||||| ||| | ||||||||||  |||||  | |||||||||||| ||  |||||   ||||  || ||  ||||     
33251497 cgatatcgctccatcacacgtcgaagtaattagataacttccatagaagacctttcgggcataaaaccagattggttataagtaactcgaatcacttttt 33251398  T
114 ttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcc 174  Q
    |||||||||| ||||| ||| ||| ||||| |||||||| ||||||||| || ||||||||    
33251397 ttagtcttcgttcaatcaccattttccatagcttcatgggatgactcataagtttaattcc 33251337  T

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Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 15216358 - 15216547
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    |||||||||  |||||||||||  | ||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||||   |||||  ||||     
15216358 ttttttatccattcgatatcgc--catcaagcgtcgaagtaagtagatcgctttcatagtcgacctcccaggcataaaaccaaattgattatccataact 15216455  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg 192  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
15216456 tgagtctcttttcttagtcttcgctcaattaccctttcgcataacttcatggtatgactcattagcttaattcccctataattcgtgcaatg 15216547  T

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Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 36544347 - 36544157
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| ||  ||||||||||  |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||     
36544347 ttttttatccgtcagatatcgctcaatcacgcgtcgaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaact 36544248  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
    |||||||  |||||||||||||  || || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
36544247 tgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctatgattcgcgcaat 36544157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 42855102 - 42855271
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || | |||||||||| |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||  ||||||  ||||     
42855102 ttttttatccgtccaatatcgctccatcacgcgtcgaagtaagtagatcgcttcaatagtcgacctcccaggcataaaaccaaattggttatccgtaacg 42855201  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaa 170  Q
     |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
42855202 cgagtctcttttcttagtcttcgctcaattttcctttcccataacttcatggtatgactcattagcttaa 42855271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 13588800 - 13588720
Alignment:
103 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 183  Q
    ||||| |||||||||| |||||||||| | | |||||| |||||| ||||||||||||||||| ||||||| | |||||||    
13588800 agtctcttttcttagttttcgctcaatcatcatttcccttaactttatggtatgactcattagtttaattcacttataatt 13588720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6184855 - 6184814
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 42  Q
    |||||||||||| |||||||||||| |||| |||||||||||    
6184855 ttttttatctgtccgatatcgctccatcacacgtcgaagtaa 6184814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 20428724 - 20428915
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| |||| |||| |||||||||| || ||||||||||| |||||||| ||||||||||| ||  ||||| | ||||     
20428724 ttttttatccgtccgatatcgctccatcacacgtcaaagtaagtagatcgcttccatagtcaacctcccaagcataaaaccatattggttatttgtaacg 20428823  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg 192  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
20428824 tgagtctctgttcttagtcttcgttcaattaccctttcccataacttcatggtatgactcattagcttaattcccttataattcgcgcaatg 20428915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 5260335 - 5260523
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| ||| |||||||| |||  || || |||||||| |||||||||||  |||||||||||||  ||||||  ||||     
5260335 ttttttatccgtccgatatcgctccatcaggcgtcgaaataaagagatcgcttccataatcgacctcccatacataaaaccaaattggttatccgtaacg 5260434  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca 189  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5260435 tgagtctcttttctaagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca 5260523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 30670089 - 30669902
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    |||||| ||||| |||||||||||| |||| ||||||||||||||| |  ||||||||||||||||||  |||||||||||||||  ||||||  ||||     
30670089 ttttttctctgtccgatatcgctccatcacacgtcgaagtaagtagattgcttccatagtcgacctcct-ggcataaaaccaaattggttatccgtaact 30669991  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca 189  Q
    |||||||  |||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
30669990 tgagtctcatttcttagtcttcgttcaatcatcctttgccataacttcatggtatgactcattagcttaattcccctataatttgcgca 30669902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 6082594 - 6082394
Alignment:
2 tttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataa-----------gtt 90  Q
    |||||||| || |||||||||| | ||||  |||||||||||||| |  |||||||||||||||||||||||||||||  ||| ||           |||    
6082594 tttttatccgtccgatatcgctgcatcacatgtcgaagtaagtagattgcttccatagtcgacctcccaggcataaaaaaaaaaaaaaaaaaaattggtt 6082495  T
91 atctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaa 190  Q
    |||  ||||  ||||||  |||||||||||||  || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6082494 atccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaa 6082395  T
191 t 191  Q
    |    
6082394 t 6082394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 9705970 - 9705850
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| || ||||||||||||||||| ||  ||||||||||||| |||||||||||||  ||| |  ||||||  ||||     
9705970 ttttttatccgtccgatatcgctccatcgcgcgtcgaagtaagtagatcgtttccatagtcgacttcccaggcataaagtcaagttggttatccgtaacg 9705871  T
101 tgagtctattttcttagtctt 121  Q
    ||||||| |||||||||||||    
9705870 tgagtctcttttcttagtctt 9705850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 26290964 - 26290789
Alignment:
15 gatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttct 114  Q
    ||||||||||| |||| | |||||| |||||| || |||||||| ||||||| |||  |||||||| ||||   || ||  |||| |||| || |||| |    
26290964 gatatcgctccatcacacatcgaagcaagtagatcgcttccata-tcgaccttccaaacataaaactaaattgattgtcaataacttgagactctttttt 26290866  T
115 tagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
    ||||||||| ||||| || ||||    |||||| |||||||||||||| || ||||||||||||| |||||| ||||    
26290865 tagtcttcgttcaatcactctttttattaactttatggtatgactcataaggttaattcccctatcattcgcacaat 26290789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 3629461 - 3629377
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 85  Q
    |||||| | ||| |||||||||||| |||  || |||||||||||| ||| |||||| |||||||||| | |||||||| |||||    
3629461 ttttttgtttgtccgatatcgctccatcatacgccgaagtaagtagatcatttccattgtcgacctccaaagcataaaatcaaat 3629377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 43241468 - 43241658
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||     
43241468 ttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaact 43241567  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
    |||||||  |||||||||||||  || || ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
43241568 tgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccttataattcacgcaat 43241658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 49348489 - 49348679
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||     
49348489 ttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccataact 49348588  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||||  || || |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
49348589 cgagtcttctttcttagtcttctttcgatcaccctttcccatgacttcatggtatgactcattagcttaattctcctataattcgcgcaat 49348679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 8671113 - 8670925
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||     
8671113 ttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattttttatccgtaact 8671014  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca 189  Q
     ||| ||  ||||||||| |||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8671013 cgaggctcctttcttagttttctttccatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca 8670925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 51441851 - 51442037
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| ||  |||||| |||| ||||||||||| |||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||     
51441851 ttttttatccgtctgatatcactccatcacgcgtcgatgtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaact 51441950  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 187  Q
     ||||||  |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51441951 cgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 51442037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 29173616 - 29173795
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| ||  ||||||||||| |||| ||||||||||||||  |  |||||||||||||||||| |||||||||||||||| |||||||  ||||     
29173616 ttttttatccgtctgatatcgctccatcacacgtcgaagtaagtaaattgcttccatagtcgacctcctaggcataaaaccaaattagttatccgtaact 29173715  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctata 180  Q
     |||||| |||||||||| |||| ||||| | |||||| |||||||| || ||| |||||||||| ||||||||||||||    
29173716 cgagtctcttttcttagttttcgttcaatcatcctttcgcataacttgattgtacgactcattagtttaattcccctata 29173795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 11681914 - 11681833
Alignment:
103 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattc 184  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||||||    
11681914 agtctcttttcttagtcttcgctcaatcaccctttcccataatttgatggtatgactctttagcttaattcccctataattc 11681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 32405580 - 32405729
Alignment:
33 gtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattac 132  Q
    |||||||||||||| |  |||||||||||||||| | ||||||||| ||||||   ||||   ||||  || ||| |||||||||||| |||||||| ||    
32405580 gtcgaagtaagtagattgcttccatagtcgaccttcaaggcataaatccaaattgattattggtaactcgaatct-ttttcttagtctccgctcaatcac 32405678  T
133 cctttcccataacttcatggtatgactcattagcttaattcccctataatt 183  Q
    | |||||||||||||||||||||||||||| || |||||| ||||||||||    
32405679 cttttcccataacttcatggtatgactcataaggttaatttccctataatt 32405729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 35829509 - 35829638
Alignment:
32 cgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaatta 131  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||| | ||||  |||||   ||||  |||| | |||||||| ||| || ||||| |    
35829509 cgtctaagtaagtagatcacttccatagtcgacctcccaggcataaatctaaattggttataagtaactcgagtattttttcttactctccgttcaatca 35829608  T
132 ccctttcccataacttcatggtatgactca 161  Q
    | ||||||||||||||| ||||||||||||    
35829609 ctctttcccataacttcttggtatgactca 35829638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 45833755 - 45833593
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    |||||||| ||| | ||||| |||| |||| ||||||||||||||| |  ||| |||||| ||  || ||  ||||||||||||| |||||||   |||     
45833755 ttttttatttgtccaatatcactccatcacacgtcgaagtaagtaggttgctttcatagttgatatctcatacataaaaccaaattagttatca--aact 45833658  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattag 165  Q
    |||||||||||  |||||||||||||||| | | |||| ||||||||||||| ||||||| ||||    
45833657 tgagtctatttctttagtcttcgctcaatcatcatttctcataacttcatggcatgactcgttag 45833593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 32629803 - 32629616
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || ||||||| |||| |||||||||||||||    | || |||||||||||||||| ||||||||||| ||||||  ||||||  ||||     
32629803 ttttttatccgtccgatatctctccatcacgcgtcgaagta----gatcgcttccatagtcgaccttccaggcataaagccaaattggttatccgtaacg 32629708  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg 192  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
32629707 tgagtctcttttcttagtcttcgttcaattaccctttcccataacttcatggtatgactcattagcttaattcccctgtaattcgcgcaatg 32629616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 36651189 - 36650999
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| |||||||||||||||||||| |  |||||||| |||||||||||| |||||||||||||  ||||||  ||||     
36651189 ttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttccataatcgacctcccagacataaaaccaaattggttatccgtaact 36651090  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
36651089 cgagtctcctttcttagtcttctttcaatcaccctttcccataacttcatggtatgactcattagcttaattctcctataattcacgcaat 36650999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 11592884 - 11592694
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||  || |||||||||||| ||||||||||||||||| || |  |||||||||||||||||| || |||||||||||||  ||||||  ||||     
11592884 ttttttattcgtccgatatcgctccatcacgcgtcgaagtaagcagattgcttccatagtcgacctccaagccataaaaccaaattggttatccgtaact 11592785  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11592784 cgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 11592694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 33350893 - 33351083
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| |||||||| ||||||||||| |  |||||||||||||||||||| ||||||||||||||  ||||||  ||||     
33350893 ttttttatccgtccgatatcgctccatcacgcgttgaagtaagtagattgcttccatagtcgacctcccaagcataaaaccaaattggttatccgtaact 33350992  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||||  |  || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
33350993 agagtctcctttcttagtcttcttttgatcaccctttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaat 33351083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 39907466 - 39907646
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| |  |||||| ||||||||||||||||||||||||||||  ||||||  ||||     
39907466 ttttttatctgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttccacagtcgacctcccaggcataaaaccaaattggttatccgtaact 39907565  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 181  Q
     | ||||  |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||| ||||    
39907566 cgggtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattccccaataa 39907646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 24178298 - 24178472
Alignment:
17 tatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttctta 116  Q
    ||||||||| |||||| ||| || |||||| || ||||||||||||||||||  ||| |||||||||||  ||||||  |||| ||||||| ||||||||    
24178298 tatcgctccatcacgcatcgcagcaagtagatcgcttccatagtcgacctccagggcgtaaaaccaaatttgttatccgtaacttgagtctcttttctta 24178397  T
117 gtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
24178398 gtcttcgttgaatcaccctttcccataacttcatggtatgactcattagctaaattcccctataattcacgcaat 24178472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 38896812 - 38896622
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| |   |||||||||||||||| |  |||||||||| |||||||||||||||||||| |||  ||||||  ||||     
38896812 ttttttatccgtccgatatcgctccattgtgcgtcgaagtaagtagattgcttccatagttgacctcccaggcataaaaccgaattggttatccgtaact 38896713  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||||  || || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
38896712 cgagtctcctttcttagtcttctttcgatcacccttttccataacttcatggtatgactcattagcttaattcccctataatttgcgcaat 38896622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22346707 - 22346586
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| ||||||||||||||| ||||| |||||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||   |||     
22346707 ttttttatccgttcgatatcgctccatcacgtgtcgaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgaaact 22346608  T
101 tgagtctattttcttagtcttc 122  Q
     ||||||  |||||||||||||    
22346607 cgagtctcctttcttagtcttc 22346586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 38606234 - 38606156
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaa 79  Q
    ||||||||| || |||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||| |||||||    
38606234 ttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagatcgctttcatagtcgacctcccagacataaaa 38606156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 46356938 - 46356983
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtag 46  Q
    ||||||||  || |||||||||||| ||||||||||||||||||||    
46356938 ttttttattcgtccgatatcgctccatcacgcgtcgaagtaagtag 46356983  T

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Target: chr5 (Bit Score: 111; Significance: 3e-56; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 2076561 - 2076751
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| || ||||||||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||     
2076561 ttttttatccgtccgatatcgctccatcccgcgtcgaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaact 2076660  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||||  || || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
2076661 cgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcgttagcttaattcccctataattcgcgcaat 2076751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 20318183 - 20317996
Alignment:
4 tttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatga 103  Q
    |||||| || |||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||    
20318183 tttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcga 20318084  T
104 gtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
    ||||  |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
20318083 gtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattccctaataatttgcgcaat 20317996  T

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Target: chr5; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 24177719 - 24177529
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| ||| |||||||||||||||| |  ||||| |||||||||| ||||||||||||||||||  ||||||  ||||     
24177719 ttttttatccgtccgatatcgctccatcatgcgtcgaagtaagtagattgcttccgtagtcgaccttccaggcataaaaccaaattggttatccgtaact 24177620  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
24177619 cgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcacgcaat 24177529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 1288615 - 1288805
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||| ||||| |||||||||||||||||||| |  |||||| | |||||||||||| |||||||||||||  ||||||  ||||     
1288615 ttttttatccgtccgatattgctccatcacgcgtcgaagtaagtagattgcttccacaatcgacctcccagccataaaaccaaattggttatccgtaact 1288714  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||||  || || ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||    
1288715 cgagtctcctttcttagtcttctttcgatcaccctttcccatagcttcatggtatgactcattaacttaattcccctataattcgcacaat 1288805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27153 - 26970
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| ||||||||||||| | |||| ||| ||||||||||| || ||||||||||||| || | || ||||||||||||   ||||||  ||||     
27153 ttttttatccgttcgatatcgcttcatcacacgttgaagtaagtagatcgcttccatagtcgatcttcaag-cataaaaccaaaatggttatcagtaact 27055  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcg 185  Q
      ||||| |||||||| | |||| ||||| ||||  | |||| |||||||||||||||||||||  |||||||||||||||||||    
27054 caagtcttttttcttaattttcgttcaatcacccgcttccatgacttcatggtatgactcattaatttaattcccctataattcg 26970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 22832091 - 22832161
Alignment:
111 ttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 181  Q
    ||||||||||||  ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
22832091 ttcttagtcttcattcaatcactttttcccataacttcatggtatgactcattagcttaattcccctataa 22832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 25937183 - 25937109
Alignment:
110 tttcttagtcttcgctcaattacccttt-cccataacttcatggtatgactcattagcttaattcccctataatt 183  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||||| |||| || ||||||  |||||||||    
25937183 tttcgtagtcttcgctcaattaaccttttcccataacttcatggtatgaatcataagtttaattgtcctataatt 25937109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 756080 - 756214
Alignment:
40 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 139  Q
    ||||||| || ||||||| ||  ||||| |||||||||||  ||||   ||||| ||| | ||||||| ||||||| |||| |||||||| || ||||||    
756080 taagtagatcgcttccattgttaacctctcaggcataaaattaaattgattatcgttaccttgagtctcttttctttgtctccgctcaatcactctttcc 756179  T
140 cataacttcatggtatgactcattagcttaattcc 174  Q
    ||||||||  ||||| ||||| | || ||||||||    
756180 cataacttgttggtacgactcttaagtttaattcc 756214  T

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Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 51448796 - 51448986
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || |||||||||||| |||||||||||||||| ||| |  |||||||||||||||||||||| ||||||||||||  ||||||  ||||     
51448796 ttttttatccgtccgatatcgctccatcacgcgtcgaagtaaatagattgcttccatagtcgacctcccaggtataaaaccaaattggttatccgtaact 51448895  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     ||||||  |||||||||||||  || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
51448896 cgagtctcctttcttagtcttctttcgatcaccctttcccataactttatggtatgactcattagcttaattcccctataattcgcgcaat 51448986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 52138023 - 52137833
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| |  ||| |||| ||||||||||||||||||||||||||  ||||||  ||||     
52138023 ttttttatctgtccgatatcgctccatcacgcgtcgaagtaagtagattgctttcatattcgacctcccaggcataaaaccaaattggttatccgtaact 52137924  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     || |||  ||||| |||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
52137923 cgaatctcctttctgagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcacaat 52137833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 38849297 - 38849107
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| || ||| ||| |||| ||| ||||| ||||||||||  | |||||||||||||||||||||||||||||  |||| |||||||| ||||     
38849297 ttttttatccgtccgacatcactccgtcaagcgtcaaagtaagtagaccgcttccatagtcgacctcccaggcataaaagaaaattagttatctgtaacc 38849198  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
     |||||| ||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
38849197 cgagtctcttttcttagccttcgttcaatcactctttcccataacttcatggtatgactcattagtttaattcccttataattcgcgcaat 38849107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 27916753 - 27916583
Alignment:
19 tcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagt 118  Q
    ||||||| |||| ||| ||||||||||  |||| ||||| ||||||||   || |||||||||||||  ||||||  |||| || |||| |||||||| |    
27916753 tcgctccatcacacgtggaagtaagtaaatcacatccatggtcgacctt--agacataaaaccaaattggttatcactaacttgggtctcttttcttatt 27916656  T
119 cttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 191  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| |  |||  ||||||||||||| ||||||    
27916655 cttcgttcaatcaccctttctcataacttcatggtatgactcatcaatttatatcccctataattcacgcaat 27916583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 3368958 - 3368775
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| ||  ||||| ||||| ||| ||||||||||| |||| | |||| ||||||||| ||| || ||| | ||| |||| | ||||   ||||     
3368958 ttttttatccgtctgatattgctccatcatgcgtcgaagtaggtagataactttcatagtcgatctcacaagcaaataactaaattaattataagtaact 3368859  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattc 184  Q
     |||||| ||||||||||||||| ||||| ||  ||||||||||||||||||||||| | || || |||||||  |||||||||    
3368858 cgagtctcttttcttagtcttcgttcaatcacattttcccataacttcatggtatgaattataagtttaattcttctataattc 3368775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 13360 - 13531
Alignment:
16 atatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttctt 115  Q
    ||||||||||  ||||||||||||||||||| ||  ||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  | ||||    
13360 atatcgctccaccacgcgtcgaagtaagtagatcgtttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactggagtcttctctctt 13459  T
116 agtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 187  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
13460 agtcttcgttcaatcaccatttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 13531  T

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Target: scaffold0018 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 30663 - 30520
Alignment:
1 ttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaaca 100  Q
    ||||||||| ||  ||||||||| | |||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||     
30663 ttttttatccgtctgatatcgcttcatcacgcgttgaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaact 30564  T
101 tgagtctattttcttagtcttcgctcaattaccctttcccataa 144  Q
     ||||||  |||||||||||||  ||||| ||||||||||||||    
30563 cgagtctcctttcttagtcttctttcaatcaccctttcccataa 30520  T

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Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 90209 - 90297
Alignment:
33 gtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtctt 121  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||| |||||  ||||||  ||||  |||||| |||||||||||||    
90209 gtcgaattaagtagatcacttccatagttgacctccctggcataaaatcaaattggttatccgtaactcgagtctcttttcttagtctt 90297  T

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Target: scaffold0140 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 14931 - 15001
Alignment:
59 gtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaat 129  Q
    |||||||||| || ||||||||||||| | ||||   ||| |||||||| |||| ||||||||||||||||    
14931 gtcgacctcctagacataaaaccaaattaattattgataatatgagtctcttttattagtcttcgctcaat 15001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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