View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_339 (Length: 210)
Name: NF0154_2D_low_339
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_339 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 1e-67; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 38 - 190
Target Start/End: Complemental strand, 27802543 - 27802388
Alignment:
| Q |
38 |
catatgcctgagttaggagataagatctcaagatagctaaatgtgaatttgatatttt---gaaatatcacggtgtgactacattaaagtcacacactag |
134 |
Q |
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| T |
27802543 |
catatgcttgagttaggagataagatctcaagatagctaaatgtgaatttgatatttttttgaaatatcacggtgtgactacattaaagtcacacactac |
27802444 |
T |
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| Q |
135 |
attgaagctaacatttaaagtttaaaaaactgctatgaaaagggctataaatgtac |
190 |
Q |
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| T |
27802443 |
attgaagctaacatttaaagtttaaaaaactactatgaaaagggctataaatgtac |
27802388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 27809906 - 27809753
Alignment:
| Q |
44 |
cctgagttaggagataagatctcaagatagctaaatgtgaatttgatattttgaaatatcacggtgtgactacattaaagtcacacactagattgaagct |
143 |
Q |
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| T |
27809906 |
cctgagttgggagatgagatatcaagattgctaaatgtgaatttggtattttgaaatgtcacggtgtgaccacattaaagtcacagactagattgaagct |
27809807 |
T |
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| Q |
144 |
aacatttaaagtttaaaaaactgctatgaaaagggctataaatgtacggtgatg |
197 |
Q |
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| T |
27809806 |
aacatttgaagcttaaaaaactgctatgaaaagggctataaatgtacggtgatg |
27809753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 27799090 - 27798953
Alignment:
| Q |
53 |
ggagataagatctcaagatagctaaatgtgaatttgatattttgaaatatcacggtgtgactacattaaagtcacacactagattgaagctaacatttaa |
152 |
Q |
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| T |
27799090 |
ggagataagatctcaaaataattaaatgagaatttgatattttgaaatatcacggtgtgaccacattagatgtacatcgtagattgaagttaacatttga |
27798991 |
T |
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| Q |
153 |
agtttaaaaaactgctatgaaaagggctataaatgtac |
190 |
Q |
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| T |
27798990 |
agcttaaaaatctgctacaaaaggggtaataaatgtac |
27798953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27802556 - 27802595
Alignment:
| Q |
1 |
atgtatgtgcgtaaatacagatacaaaaaatctttatcat |
40 |
Q |
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| T |
27802556 |
atgtatgtgcgtaaatacatatacaaaaaatctttatcat |
27802595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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