View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_345 (Length: 208)

Name: NF0154_2D_low_345
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_345
NF0154_2D_low_345
[»] chr7 (32 HSPs)
chr7 (18-140)||(21412815-21412937)
chr7 (18-100)||(31893529-31893611)
chr7 (16-99)||(4187496-4187579)
chr7 (26-85)||(36566282-36566341)
chr7 (18-100)||(33879569-33879651)
chr7 (27-99)||(39958677-39958749)
chr7 (18-101)||(1346468-1346551)
chr7 (18-101)||(5559671-5559753)
chr7 (18-85)||(5805042-5805109)
chr7 (18-85)||(5805647-5805713)
chr7 (18-101)||(20366037-20366119)
chr7 (26-101)||(31893238-31893313)
chr7 (18-85)||(40904695-40904762)
chr7 (18-85)||(40904755-40904822)
chr7 (18-100)||(8039652-8039734)
chr7 (18-92)||(34951515-34951589)
chr7 (18-99)||(33235024-33235105)
chr7 (27-107)||(23150621-23150701)
chr7 (26-100)||(1441494-1441568)
chr7 (18-100)||(21433133-21433215)
chr7 (18-100)||(41020177-41020258)
chr7 (18-99)||(1286360-1286441)
chr7 (18-99)||(19925391-19925472)
chr7 (26-99)||(28256998-28257071)
chr7 (18-103)||(39959247-39959332)
chr7 (164-200)||(21412771-21412807)
chr7 (18-101)||(19925093-19925176)
chr7 (18-53)||(33879347-33879382)
chr7 (26-89)||(42990500-42990563)
chr7 (18-51)||(20101860-20101893)
chr7 (18-99)||(27995573-27995654)
chr7 (42-86)||(31893442-31893486)
[»] chr4 (23 HSPs)
chr4 (18-101)||(26330060-26330143)
chr4 (18-100)||(35023735-35023817)
chr4 (18-100)||(43098171-43098253)
chr4 (18-101)||(19631751-19631834)
chr4 (26-82)||(2789036-2789092)
chr4 (18-100)||(2788779-2788861)
chr4 (33-99)||(36890655-36890721)
chr4 (27-101)||(52865944-52866018)
chr4 (27-100)||(9319999-9320072)
chr4 (18-99)||(43098465-43098546)
chr4 (33-104)||(42116076-42116147)
chr4 (26-85)||(52183485-52183544)
chr4 (29-98)||(52181706-52181775)
chr4 (29-100)||(8408924-8408995)
chr4 (41-100)||(30543195-30543254)
chr4 (33-100)||(52567732-52567799)
chr4 (30-84)||(8408407-8408461)
chr4 (25-99)||(23085267-23085340)
chr4 (18-80)||(35046437-35046499)
chr4 (26-90)||(22025362-22025426)
chr4 (32-84)||(35046493-35046545)
chr4 (16-48)||(36890450-36890482)
chr4 (42-90)||(44916328-44916376)
[»] scaffold0027 (2 HSPs)
scaffold0027 (18-100)||(9383-9465)
scaffold0027 (18-102)||(9926-10010)
[»] chr1 (12 HSPs)
chr1 (17-82)||(4030310-4030375)
chr1 (18-101)||(44964127-44964209)
chr1 (18-100)||(11897831-11897913)
chr1 (18-100)||(29419102-29419184)
chr1 (18-71)||(35701400-35701453)
chr1 (18-98)||(49650564-49650644)
chr1 (18-100)||(17898901-17898983)
chr1 (18-99)||(10686767-10686848)
chr1 (30-90)||(8903284-8903344)
chr1 (30-85)||(29419054-29419109)
chr1 (18-81)||(44964067-44964130)
chr1 (26-101)||(48352803-48352878)
[»] chr8 (34 HSPs)
chr8 (26-101)||(9276469-9276545)
chr8 (18-101)||(29792580-29792663)
chr8 (18-84)||(39700828-39700895)
chr8 (18-85)||(39700888-39700955)
chr8 (27-101)||(9770857-9770931)
chr8 (18-99)||(44041350-44041431)
chr8 (18-82)||(43422864-43422928)
chr8 (18-81)||(9277046-9277109)
chr8 (18-84)||(23553359-23553425)
chr8 (18-100)||(36314709-36314791)
chr8 (26-91)||(14871418-14871483)
chr8 (18-99)||(45017981-45018062)
chr8 (18-101)||(25737091-25737174)
chr8 (30-85)||(39700948-39701003)
chr8 (18-85)||(40553301-40553368)
chr8 (18-84)||(11113555-11113621)
chr8 (18-100)||(31169547-31169628)
chr8 (30-92)||(35434344-35434406)
chr8 (18-99)||(4613729-4613810)
chr8 (18-99)||(8713835-8713916)
chr8 (18-106)||(30576134-30576222)
chr8 (42-101)||(11113733-11113792)
chr8 (18-85)||(29794260-29794327)
chr8 (18-101)||(29794320-29794403)
chr8 (30-81)||(31169499-31169550)
chr8 (27-90)||(43423163-43423226)
chr8 (18-100)||(29030180-29030262)
chr8 (18-84)||(30576722-30576788)
chr8 (27-81)||(40552769-40552823)
chr8 (18-92)||(40553361-40553435)
chr8 (18-86)||(4613802-4613870)
chr8 (18-82)||(8713912-8713976)
chr8 (18-90)||(13771416-13771488)
chr8 (30-106)||(36360149-36360225)
[»] chr2 (22 HSPs)
chr2 (18-101)||(30907062-30907144)
chr2 (26-104)||(27893622-27893700)
chr2 (18-101)||(30907368-30907451)
chr2 (18-101)||(37543133-37543216)
chr2 (26-100)||(19080617-19080691)
chr2 (26-81)||(19081069-19081124)
chr2 (18-99)||(16781102-16781184)
chr2 (18-100)||(34336327-34336409)
chr2 (27-92)||(15505950-15506015)
chr2 (18-106)||(31263906-31263995)
chr2 (27-84)||(34336039-34336096)
chr2 (18-81)||(8260392-8260455)
chr2 (18-85)||(27893038-27893105)
chr2 (18-85)||(30907137-30907204)
chr2 (18-101)||(39376161-39376244)
chr2 (33-85)||(15506049-15506101)
chr2 (42-85)||(5116908-5116951)
chr2 (18-85)||(34429684-34429751)
chr2 (27-101)||(32341380-32341454)
chr2 (26-99)||(36196565-36196636)
chr2 (17-85)||(31263988-31264056)
chr2 (52-100)||(39301133-39301180)
[»] chr6 (13 HSPs)
chr6 (25-90)||(28630677-28630742)
chr6 (18-101)||(17180192-17180275)
chr6 (18-100)||(9902318-9902400)
chr6 (27-85)||(10862650-10862708)
chr6 (18-99)||(11527526-11527607)
chr6 (27-99)||(32417459-32417531)
chr6 (27-99)||(32423300-32423372)
chr6 (18-81)||(10962746-10962809)
chr6 (26-101)||(16168453-16168528)
chr6 (18-99)||(2839615-2839696)
chr6 (18-85)||(17180132-17180199)
chr6 (18-99)||(2840105-2840186)
chr6 (30-90)||(10407308-10407368)
[»] scaffold0041 (2 HSPs)
scaffold0041 (18-85)||(45196-45263)
scaffold0041 (18-85)||(45256-45323)
[»] chr5 (13 HSPs)
chr5 (18-101)||(14235556-14235639)
chr5 (18-99)||(32459848-32459929)
chr5 (26-90)||(13543083-13543147)
chr5 (33-100)||(18248947-18249014)
chr5 (27-101)||(5734451-5734525)
chr5 (30-84)||(19279236-19279290)
chr5 (18-99)||(35190465-35190546)
chr5 (27-100)||(38405597-38405670)
chr5 (26-90)||(13538468-13538532)
chr5 (42-85)||(35190429-35190472)
chr5 (33-82)||(18237919-18237968)
chr5 (30-82)||(1722567-1722619)
chr5 (33-81)||(30737808-30737856)
[»] chr3 (7 HSPs)
chr3 (27-100)||(4276124-4276197)
chr3 (18-101)||(31247697-31247780)
chr3 (30-100)||(54456660-54456730)
chr3 (18-99)||(3088146-3088227)
chr3 (27-104)||(21376551-21376628)
chr3 (42-100)||(50530235-50530293)
chr3 (18-99)||(54456908-54456989)
[»] scaffold0019 (2 HSPs)
scaffold0019 (18-108)||(124410-124500)
scaffold0019 (30-100)||(124132-124202)
[»] scaffold0746 (1 HSPs)
scaffold0746 (18-85)||(588-655)
[»] scaffold0070 (1 HSPs)
scaffold0070 (18-85)||(28548-28615)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 21412937 - 21412815
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttggtctattgagatattgt 117  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  21412937 aaaaggatctaattgaaactttcaaaacttaaaggattaacttaagaattctgtcaaactaaaaggactaaaaatgatatttcgcctattgagatattgt 21412838  T
Q  118 caattgtgatacttggaggatta 140  Q
    ||||||| |||||||||||||||    
T  21412837 caattgtaatacttggaggatta 21412815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 31893529 - 31893611
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||| |||||||||||||| |||||||||| || ||| |||  |||| ||||||||||||||||| ||||||||||||||    
T  31893529 aaaaggacctaattgaaacttttaaaacttaaaggactaacttagaaattctgtcaaactaaaaggaccaaaaatgatatttg 31893611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 4187579 - 4187496
Alignment:
Q  16 caaaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| | ||||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||  ||| |||| ||||||||    
T  4187579 caaaaagtacctaattgaaactttctaaacttaaaggattaatttatgaattctgtcaaactaaactgacgaaaagtgatattt 4187496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 36566341 - 36566282
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||||||||||||||||||||| || ||| ||||||||| |||||||||||||||||    
T  36566341 ctaattgaaactttcaaaacttaaatgactaacttaagaattctgtcaaactaaaaggac 36566282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 33879569 - 33879651
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||| ||||||||||||||| ||||||||| || ||| ||  ||||| ||||||||||||||||| ||||||| ||||||    
T  33879569 aaaaggacctaattgaaactttcgaaacttaaaggactaacttgtgaattctgtcaaactaaaaggaccaaaaatggtatttg 33879651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 39958749 - 39958677
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    |||||||||||||| | ||||||| || ||| |||| |||| ||||||||||||||||| |||||||||||||    
T  39958749 taattgaaactttcgagacttaaatgactaacttaaaaattatgtcaaactaaaaggaccaaaaatgatattt 39958677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 1346551 - 1346468
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    |||||||| |||||||||||||| |||||||||  | ||| ||||||||| ||||||||||||||||  |||| ||| ||||||    
T  1346551 aaaaggatttaattgaaactttcgaaacttaaagcactaacttaagaattctgtcaaactaaaaggatcaaaagtgaaatttgg 1346468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 5559671 - 5559753
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||| |||||||||||||| |||||||||| || ||| ||  ||||||||||||||||||||||| |||| || |||||||    
T  5559671 aaaaggacctaattgaaacttt-aaaacttaaaggactaacttgggaattttgtcaaactaaaaggaccaaaagtggtatttgg 5559753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 5805109 - 5805042
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||| ||||||||||||||| ||||||||| || ||| || |||||| |||||||||||||||||    
T  5805109 aaaaggacctaattgaaactttcgaaacttaaaggactaacttgagaattctgtcaaactaaaaggac 5805042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 5805647 - 5805713
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    |||||||  |||||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||    
T  5805647 aaaaggacataattgaaactttcaaaacttaaatgactaacttaa-aattttgtcaaactaaaaggac 5805713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 20366119 - 20366037
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    |||||||  |||||||||||||| ||||||||| || ||| || |||||| ||| ||||||||||||| |||||||||||||||    
T  20366119 aaaaggacataattgaaactttcgaaacttaaaggactaacttgagaattctgt-aaactaaaaggaccaaaaatgatatttgg 20366037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 31893313 - 31893238
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||||||||||| |||||||||| | ||| || |||||| |||||||||||||| || ||||||| |||||||    
T  31893313 ctaattgaaactttcgaaacttaaaaaactaacttgagaattctgtcaaactaaaagaaccaaaaatggtatttgg 31893238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 40904762 - 40904695
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||| |||||||||||||| ||||||||||||| ||| || |||||| |||||||| ||||||||    
T  40904762 aaaaggacctaattgaaacttttaaaacttaaaagactaacttgagaattatgtcaaaccaaaaggac 40904695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 40904822 - 40904755
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||||||| |||||||||| |||||||||| || |||||| | |||| |||||||||||||||||    
T  40904822 aaaaggatctatttgaaacttttaaaacttaaatgactaatttgaaaattatgtcaaactaaaaggac 40904755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 8039734 - 8039652
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||| ||||||||||||||| |||||||||  | ||| || |||||| ||||||||||||||||| |||| || ||||||    
T  8039734 aaaaggacctaattgaaactttcgaaacttaaagaactaacttgagaattatgtcaaactaaaaggacaaaaagtggtatttg 8039652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 34951515 - 34951589
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaat 92  Q
    ||||||||||||||||||||||| ||||||||| || ||| || | |||| ||||||||||||| ||| ||||||    
T  34951515 aaaaggatctaattgaaactttcgaaacttaaaggactaacttgataattctgtcaaactaaaaagaccaaaaat 34951589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 33235105 - 33235024
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| |||||||||||||| |||| ||||| |||||| || |||||| ||||||||||||| ||  |||| ||||||||    
T  33235105 aaaaggacctaattgaaacttttaaaatttaaaggattaacttgagaattctgtcaaactaaaatgaacaaaagtgatattt 33235024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 23150701 - 23150621
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttggtctatt 107  Q
    |||||||||||||||||| ||||| || ||| || |||||| ||||||||||||||||| ||| ||  ||||||| |||||    
T  23150701 taattgaaactttcaaaatttaaaggactaacttgagaattatgtcaaactaaaaggaccaaacatagtatttggcctatt 23150621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 1441494 - 1441568
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||||||||||| |||| |||| || ||| ||  ||||| ||||||||||||||||| |||| |||||||||    
T  1441494 ctaattgaaactttcgaaacctaaaggactaacttgggaattatgtcaaactaaaaggaccaaaagtgatatttg 1441568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 21433215 - 21433133
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||  |||||||||| ||| ||||||||| || ||| ||  ||||||||||||||||||||||  |||| |||||||||    
T  21433215 aaaaggacttaattgaaacattcgaaacttaaaggactaacttgtgaattttgtcaaactaaaaggatcaaaagtgatatttg 21433133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 41020177 - 41020258
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||||||||| ||||||||||||||||||| | ||| ||   |||| ||||||||||||||||  ||||||| ||||||    
T  41020177 aaaaggatctaattaaaactttcaaaacttaaaa-actaacttggaaattatgtcaaactaaaaggatcaaaaatggtatttg 41020258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 1286441 - 1286360
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| ||||||||||||||  ||| |||||| | |||||| | |||| | ||||||||||||||| |||| ||||||||    
T  1286441 aaaaggacctaattgaaacttttgaaatttaaaaaactaatttgaaaattctatcaaactaaaaggacgaaaagtgatattt 1286360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 19925391 - 19925472
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    |||||||||||||| ||||||||  |||||||| || ||| ||  |||||||||||||||||||| || |||| || |||||    
T  19925391 aaaaggatctaattaaaactttcgcaacttaaaggactaagttgggaattttgtcaaactaaaagaaccaaaagtggtattt 19925472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 28256998 - 28257071
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    |||||||||| ||||||||||||||| | ||| || |||||| | ||||||||||||||| |||| || |||||    
T  28256998 ctaattgaaattttcaaaacttaaaaaactaactttagaattatatcaaactaaaaggacaaaaagtggtattt 28257071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 39959247 - 39959332
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttggtc 103  Q
    ||||| ||||| ||||||||||  ||| ||||| || |||||||| |||| ||||||||||||||||| |||  || |||||||||    
T  39959247 aaaagaatctatttgaaacttttcaaatttaaatgactaatttaaaaattctgtcaaactaaaaggaccaaacgtggtatttggtc 39959332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 21412807 - 21412771
Alignment:
Q  164 aacataaccctttcatatattgacaatcaattctttc 200  Q
    ||||||| |||||||||||||||||||||||||||||    
T  21412807 aacataagcctttcatatattgacaatcaattctttc 21412771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 19925176 - 19925093
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||||||||||||||||||| |||||| || || ||| ||   |||| ||||||||||||| ||| ||||||  |||||||    
T  19925176 aaaaggatctaattgaaactttcgaaacttgaaggagtaacttggaaattctgtcaaactaaaaagaccaaaaatagtatttgg 19925093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 33879382 - 33879347
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaaga 53  Q
    |||||||||||||| |||||||||||||||||||||    
T  33879382 aaaaggatctaattaaaactttcaaaacttaaaaga 33879347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 42990563 - 42990500
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaa 89  Q
    |||||| |||||||||||||||||| || |||||||| |||| | || ||||||||| ||||||    
T  42990563 ctaattaaaactttcaaaacttaaaggactaatttaaaaattctttccaactaaaagcactaaa 42990500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 20101893 - 20101860
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaa 51  Q
    ||||||||||||||||||||||| ||||||||||    
T  20101893 aaaaggatctaattgaaactttcgaaacttaaaa 20101860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 27995573 - 27995654
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||||||| || |||||||  ||||||||| || ||| |||| || | ||||| ||||||| ||| |||||||||||||    
T  27995573 aaaaggatctatttaaaacttttgaaacttaaaggactaacttaaaaaatatgtcatactaaaaagaccaaaaatgatattt 27995654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 31893442 - 31893486
Alignment:
Q  42 aaacttaaaagattaatttaagaattttgtcaaactaaaaggact 86  Q
    ||||||||| || ||| || |||||||||||||||||||||||||    
T  31893442 aaacttaaaggactaacttgagaattttgtcaaactaaaaggact 31893486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 26330060 - 26330143
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||||||||||||||||||||||||||||| || ||| || |||||| |||||||||||||||||||||| || |||||||    
T  26330060 aaaaggatctaattgaaactttcaaaacttaaaggactaacttgagaattctgtcaaactaaaaggactaaaagtggtatttgg 26330143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 35023817 - 35023735
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||| ||||||||||||||||| ||||| ||||||| |||||||| |||| | |||||||||||||||||||| | |||||||    
T  35023817 aaaatgatctaattgaaacttttaaaacgtaaaagactaatttaataattctttcaaactaaaaggactaaaagttatatttg 35023735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 43098253 - 43098171
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||| ||||||||||||||||||||||||| || ||| |||  |||||||||||||||||||||| |||| || ||||||    
T  43098253 aaaaggacctaattgaaactttcaaaacttaaaggactaacttagaaattttgtcaaactaaaaggaccaaaagtggtatttg 43098171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 19631834 - 19631751
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||| ||||||||||||||| ||||||||| || ||| || |||||||||||||| ||||||||| |||  ||||||||||    
T  19631834 aaaaggacctaattgaaactttcgaaacttaaaggactaacttgagaattttgtcaaaataaaaggaccaaacgtgatatttgg 19631751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 2789036 - 2789092
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaag 82  Q
    ||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||    
T  2789036 ctaattgaaacttccaaaacttaaaggactaatttaaaaattttgtcaaactaaaag 2789092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 2788861 - 2788779
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||| ||||||||||||||| ||||||||| || ||| || |||||||  |||||||||||||| ||||| || ||||||    
T  2788861 aaaaggacctaattgaaactttcgaaacttaaaggactaacttgagaatttcatcaaactaaaaggattaaaagtggtatttg 2788779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 36890655 - 36890721
Alignment:
Q  33 aaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| |||||||||| |||||| |||| |||| |||||||||||||||| ||||| ||||||||    
T  36890655 aaacttttaaaacttaaatgattaacttaaaaattctgtcaaactaaaaggattaaaagtgatattt 36890721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 52866018 - 52865944
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||| |||||||||||||||||| || ||| || |||||| ||||||||||||||||| |||| || |||||||    
T  52866018 taatttaaactttcaaaacttaaaggactaacttgagaattctgtcaaactaaaaggacaaaaagtggtatttgg 52865944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 9320072 - 9319999
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||||||||| |||||||||| | ||| || ||||||||||||||||||||| || |||| || ||||||    
T  9320072 taattgaaactttcgaaacttaaaaaactaacttgagaattttgtcaaactaaaagaacgaaaagtgttatttg 9319999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 43098465 - 43098546
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| ||||||||||||||| |||||||||  | ||| |||  |||| ||||||||||||||||| ||||||| |||||    
T  43098465 aaaaggacctaattgaaactttcgaaacttaaagaactaagttagaaattctgtcaaactaaaaggaccaaaaatggtattt 43098546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 42116076 - 42116147
Alignment:
Q  33 aaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttggtct 104  Q
    |||||||  ||||||||| || ||| |||| |||||||||||||||||| ||| ||||||| ||||||||||    
T  42116076 aaacttttgaaacttaaaggactaacttaaaaattttgtcaaactaaaatgaccaaaaatggtatttggtct 42116147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 52183485 - 52183544
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||||||||||| ||||||||| || ||| || |||||||||| |||||||||||||    
T  52183485 ctaattgaaactttcgaaacttaaaggactaacttgagaattttgtaaaactaaaaggac 52183544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 52181775 - 52181706
Alignment:
Q  29 attgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatt 98  Q
    |||||||||||||||| |||||  | ||| || |||||||||||||||||||||||  ||||||| ||||    
T  52181775 attgaaactttcaaaatttaaagaactaacttgagaattttgtcaaactaaaaggatcaaaaatggtatt 52181706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 8408924 - 8408995
Alignment:
Q  29 attgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||| |||| ||||||||| || ||| || |||||| ||||||||||||| ||| |||| |||||||||    
T  8408924 attgaaattttcgaaacttaaatgactaacttgagaattatgtcaaactaaaatgaccaaaagtgatatttg 8408995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 30543195 - 30543254
Alignment:
Q  41 aaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||||| |||||||||   |||||||||||| ||||||||| ||| ||||||||||    
T  30543195 aaaacttaaaggattaatttggaaattttgtcaaattaaaaggaccaaacatgatatttg 30543254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 52567799 - 52567732
Alignment:
Q  33 aaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||  ||||||||| || ||| ||||||||| ||||||||||||||||| |||  |||||||||    
T  52567799 aaacttttgaaacttaaatgactaacttaagaattctgtcaaactaaaaggaccaaacgtgatatttg 52567732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 8408461 - 8408407
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaagga 84  Q
    ||||||||||  |||||||||||| | | || |||||||||||||||||||||||    
T  8408461 ttgaaacttttcaaacttaaaagacttacttgagaattttgtcaaactaaaagga 8408407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 23085267 - 23085340
Alignment:
Q  25 tctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    |||||||||||||||  ||||||||| || ||| |||| | || |||||||||||||| || |||||||||||||    
T  23085267 tctaattgaaacttttgaaacttaaa-gactaacttaaaatttctgtcaaactaaaagaaccaaaaatgatattt 23085340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 35046499 - 35046437
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaa 80  Q
    |||||||||||||| |||||||| ||||||||| || ||| || | |||| ||||||||||||    
T  35046499 aaaaggatctaattaaaactttcgaaacttaaaggactaaattgaaaattatgtcaaactaaa 35046437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 22025362 - 22025426
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaa 90  Q
    ||||||||||||||| |||||| || || ||| || | |||| ||||||||||||| ||||||||    
T  22025362 ctaattgaaactttcgaaacttcaaggactaacttgataattatgtcaaactaaaatgactaaaa 22025426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 35046545 - 35046493
Alignment:
Q  32 gaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaagga 84  Q
    ||||||||  ||||||||| || ||||||| ||||| ||||||||||||||||    
T  35046545 gaaacttttgaaacttaaaggactaatttaggaattctgtcaaactaaaagga 35046493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 36890482 - 36890450
Alignment:
Q  16 caaaaaggatctaattgaaactttcaaaactta 48  Q
    |||||| ||||||||||||||||||||||||||    
T  36890482 caaaaatgatctaattgaaactttcaaaactta 36890450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 44916328 - 44916376
Alignment:
Q  42 aaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaa 90  Q
    ||||||||| || ||| || | |||||||||||||||||||||||||||    
T  44916328 aaacttaaaggactaacttgaaaattttgtcaaactaaaaggactaaaa 44916376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 9465 - 9383
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||| ||||||||||||| | ||||||||| || ||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  9465 aaaaggacctaattgaaacttccgaaacttaaatgactaacttaagaattctgtcaaactaaaaggacgaaaaatgatatttg 9383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 9926 - 10010
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttggt 102  Q
    ||||||| ||||||||||||||| |||||||||  | ||| || |||||| ||||||||||||||||| |||  |||||||||||    
T  9926 aaaaggaactaattgaaactttcgaaacttaaagaactaacttgagaattctgtcaaactaaaaggacgaaacgtgatatttggt 10010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 4030375 - 4030310
Alignment:
Q  17 aaaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaag 82  Q
    |||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  4030375 aaaaaggacctaattgaaactttcgaaacttaaaggattaacttaagaattttgtcaaactaaaag 4030310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 44964127 - 44964209
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    |||| |||||||||||||||||| |||||| ||||| ||| || ||||||||||| |||||||||||  ||||||| |||||||    
T  44964127 aaaatgatctaattgaaactttcgaaactt-aaagactaacttgagaattttgtctaactaaaaggatcaaaaatggtatttgg 44964209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 11897913 - 11897831
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||| ||||||||||||||| ||||||||| || ||| || |||||| ||||||||||||| ||| |||| || ||||||    
T  11897913 aaaaggacctaattgaaactttcgaaacttaaatgactaacttgagaattctgtcaaactaaaatgaccaaaagtggtatttg 11897831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 29419102 - 29419184
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||| ||||||||||||||| |||||| ||||| ||| ||   |||| ||||||||||||||||| |||| |||||||||    
T  29419102 aaaaggacctaattgaaactttcgaaacttgaaagactaacttggaaattatgtcaaactaaaaggaccaaaagtgatatttg 29419184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 35701453 - 35701400
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgt 71  Q
    |||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||    
T  35701453 aaaaagatctaattaaaactttcaaaacttaaaagattaaattaaaaattttgt 35701400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 49650644 - 49650564
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatt 98  Q
    ||||||| |||||||||| |||||||| ||||| || ||| || |||||| ||||||||||||||||  ||||||| ||||    
T  49650644 aaaaggacctaattgaaattttcaaaatttaaaggactaacttgagaattatgtcaaactaaaaggataaaaaatggtatt 49650564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 17898901 - 17898983
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||| |||||||||| ||| ||||||||||  | |||||| |||||  ||||||||||||||||| |||| || ||||||    
T  17898901 aaaaggacctaattgaaatttttaaaacttaaagaactaatttgagaatcatgtcaaactaaaaggaccaaaagtggtatttg 17898983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 10686767 - 10686848
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| |||| | |||||||| ||||||||| || ||| || | |||| ||||||||||||||||| |||| ||||||||    
T  10686767 aaaaggacctaacttaaactttcgaaacttaaaggactaacttgaaaattctgtcaaactaaaaggaccaaaagtgatattt 10686848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 8903284 - 8903344
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaa 90  Q
    ||||||||||| ||||||||| |||||| || |||||| ||||||||||||| ||| ||||    
T  8903284 ttgaaactttcgaaacttaaaggattaacttgagaattatgtcaaactaaaaagaccaaaa 8903344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 29419054 - 29419109
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||||||  |||||||||||| ||||||  ||||| |||||||||||||||||    
T  29419054 ttgaaacttttgaaacttaaaagactaattttggaattctgtcaaactaaaaggac 29419109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 44964067 - 44964130
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaa 81  Q
    ||||||| ||| |||||||||| |||||||||| || ||| || |||||| |||||||||||||    
T  44964067 aaaaggacctatttgaaacttttaaaacttaaaggaataacttgagaattctgtcaaactaaaa 44964130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 48352803 - 48352878
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||||| ||||| |||||||||||| ||| |   ||||| ||||||||||||||||| |||| || |||||||    
T  48352803 ctaattgaatctttcgaaacttaaaagactaactcgggaattctgtcaaactaaaaggaccaaaagtggtatttgg 48352878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 9276545 - 9276469
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagat-taatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||||||||||||||||||||||||  || ||| |||||||||||||||||||||||| |||| ||||||||||    
T  9276545 ctaattgaaactttcaaaacttaaaagaactattttgagaattttgtcaaactaaaaggaccaaaagtgatatttgg 9276469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 29792580 - 29792663
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||||||||| ||||||||| ||| ||||| || ||||||  ||||| ||||||||||||||||||||||||| |||||||    
T  29792580 aaaaggatctaatagaaactttcgaaatttaaaggactaatttgggaattctgtcaaactaaaaggactaaaaatggtatttgg 29792663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 39700895 - 39700828
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtc-aaactaaaagga 84  Q
    ||||||| |||||||||||||||||||||||||||| |||  ||||||||||||| ||||||||||||    
T  39700895 aaaaggacctaattgaaactttcaaaacttaaaagactaacataagaattttgtcaaaactaaaagga 39700828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 39700955 - 39700888
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    |||||||  ||||||||||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  39700955 aaaaggacataattgaaacttttaaaacttaaaggactaacttaagaattttgtcaaactaaaaggac 39700888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 9770857 - 9770931
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    |||||||||||||| ||||||||| || ||| || |||||||||||||||||||||||| |||| || |||||||    
T  9770857 taattgaaactttcgaaacttaaaggactaacttgagaattttgtcaaactaaaaggaccaaaagtggtatttgg 9770931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 44041350 - 44041431
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    |||||||  |||||||||||||||||||||||| || ||| || | |||||||||||||||||||||| |||| | ||||||    
T  44041350 aaaaggacataattgaaactttcaaaacttaaaggactaacttgaaaattttgtcaaactaaaaggacaaaaactaatattt 44041431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 43422928 - 43422864
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaag 82  Q
    ||||||| ||||||||||||||||||||||||| || |||||| |||||| | ||||||||||||    
T  43422928 aaaaggacctaattgaaactttcaaaacttaaaggactaatttgagaattatatcaaactaaaag 43422864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 9277046 - 9277109
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaa 81  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||  ||||| |||||||||||||    
T  9277046 aaaaggatctaattgaaactttcgaaacttaaaagactaacttgggaattctgtcaaactaaaa 9277109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 23553425 - 23553359
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaagga 84  Q
    ||||||| ||||||||||||||| ||||||||| ||| || || |||||| ||||||||||||||||    
T  23553425 aaaaggacctaattgaaactttcgaaacttaaaggatcaagttgagaattctgtcaaactaaaagga 23553359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 36314709 - 36314791
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||  |||||||||||||| ||| |||||||| ||| || | |||||||||||||||||||||| |||| || ||||||    
T  36314709 aaaaggacataattgaaactttcgaaatttaaaagactaacttgataattttgtcaaactaaaaggaccaaaagtggtatttg 36314791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 14871418 - 14871483
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaa 91  Q
    ||||||||||||||| |||||||||||| ||| ||| ||||| ||||||||| ||||||| |||||    
T  14871418 ctaattgaaactttcgaaacttaaaagactaacttaggaattctgtcaaacttaaaggaccaaaaa 14871483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 45017981 - 45018062
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| |||||| |||||||| ||||||||| || ||| || |  |||||||||||||||||||||||||| || |||||    
T  45017981 aaaaggacctaattaaaactttcgaaacttaaaggactaacttgaagattttgtcaaactaaaaggactaaaagtggtattt 45018062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 25737174 - 25737091
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||||||| ||||||||||  ||||||||| || ||| || | |||| ||||||||||||||||| ||| ||| |||||||    
T  25737174 aaaaggatctatttgaaacttttgaaacttaaaggactaacttgaaaattatgtcaaactaaaaggaccaaatatggtatttgg 25737091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 39701003 - 39700948
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||||||  ||||||||| |||||| ||| |||||||||||||||||||||||    
T  39701003 ttgaaacttttgaaacttaaaggattaacttaggaattttgtcaaactaaaaggac 39700948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 40553301 - 40553368
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||| | ||||||||||||  |||||||||||| ||| |||  ||||||||||||||||||||||    
T  40553301 aaaaggaccaaattgaaacttttgaaacttaaaagactaacttagaaattttgtcaaactaaaaggac 40553368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 11113621 - 11113555
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaagga 84  Q
    ||||||| || |||||||||||||||| ||||| || ||| ||| ||||| ||||||||||||||||    
T  11113621 aaaaggacctgattgaaactttcaaaatttaaaggactaacttaggaattatgtcaaactaaaagga 11113555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 31169547 - 31169628
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||| |||||| |||||||||| |||||||||| || ||| || |||||||||||||||||||| ||| |||  |||||||||    
T  31169547 aaaatgatctatttgaaacttt-aaaacttaaaggactaacttgagaattttgtcaaactaaaatgaccaaacgtgatatttg 31169628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 35434344 - 35434406
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaat 92  Q
    ||||||||||  ||||||||| |||||| ||| ||||| ||||||||||||||||| ||||||    
T  35434344 ttgaaacttttgaaacttaaaggattaacttaggaattatgtcaaactaaaaggaccaaaaat 35434406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 4613810 - 4613729
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    |||||||  |||||||||||||||||| ||||| |||||| || | |||| | ||||||||||||||| |||  ||||||||    
T  4613810 aaaaggacttaattgaaactttcaaaatttaaaggattaacttgaaaattctttcaaactaaaaggaccaaatgtgatattt 4613729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 8713916 - 8713835
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||| || |||||||||||||  ||||||||| || ||| || |||||| ||||||||||||||||| |||| || |||||    
T  8713916 aaaagaatttaattgaaacttttgaaacttaaaggactaacttgagaattatgtcaaactaaaaggaccaaaagtggtattt 8713835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 30576222 - 30576134
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttggtctat 106  Q
    |||||||  |||||||||||||||||| ||||| || ||| ||  ||||| |||||| |||||| ||| |||| |||||||||| ||||    
T  30576222 aaaaggacttaattgaaactttcaaaatttaaaggactaacttgggaattctgtcaagctaaaaagaccaaaagtgatatttggcctat 30576134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 11113733 - 11113792
Alignment:
Q  42 aaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    |||||||||||| || |||  ||||||||||||| ||||||||| ||||||| |||||||    
T  11113733 aaacttaaaagactagtttgggaattttgtcaaattaaaaggaccaaaaatggtatttgg 11113792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 29794260 - 29794327
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||||||| ||||||||||  |||||||||||| ||| ||   |||| |||||||||||||||||    
T  29794260 aaaaggatctatttgaaacttttgaaacttaaaagactaacttggaaattatgtcaaactaaaaggac 29794327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 29794320 - 29794403
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||| |||||  |||||||| ||| ||||| || ||| ||  ||||| ||||||||||||| ||| |||||||||||||||    
T  29794320 aaaaggacctaatgaaaactttcgaaatttaaaggactaacttgggaattctgtcaaactaaaatgaccaaaaatgatatttgg 29794403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 31169499 - 31169550
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaa 81  Q
    |||||||||| |||||||||| || |||||| ||||||| ||||||||||||    
T  31169499 ttgaaacttttaaaacttaaaggactaatttgagaatttcgtcaaactaaaa 31169550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 43423163 - 43423226
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaa 90  Q
    |||||||||||||| |||||||||  | ||| ||| ||||| ||||||||||||||||| ||||    
T  43423163 taattgaaactttcgaaacttaaataactaacttaggaattatgtcaaactaaaaggaccaaaa 43423226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 29030180 - 29030262
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||  |||||||||||||| ||||||||| || ||| | | ||||| ||||||||||||| ||| |||| || ||||||    
T  29030180 aaaaggacttaattgaaactttcgaaacttaaaggaataactaaggaattatgtcaaactaaaatgaccaaaagtggtatttg 29030262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 30576722 - 30576788
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaagga 84  Q
    ||||||| ||||||||||||||  ||||||| |||| ||| || | |||| ||||||||||||||||    
T  30576722 aaaaggacctaattgaaacttttgaaacttagaagactaacttgaaaattctgtcaaactaaaagga 30576788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 40552823 - 40552769
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaa 81  Q
    |||||||||||||||||| ||||| |||||| || | |||| |||||||||||||    
T  40552823 taattgaaactttcaaaatttaaatgattaacttgaaaattctgtcaaactaaaa 40552769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 40553361 - 40553435
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaat 92  Q
    ||||||| || |||||||||||  ||||| ||| || ||| ||| ||||| ||||||||||||||||| ||||||    
T  40553361 aaaaggacctgattgaaactttttaaactcaaaggactaagttaggaattatgtcaaactaaaaggaccaaaaat 40553435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 4613870 - 4613802
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggact 86  Q
    ||||| ||||| ||||||||||  ||||||||| || ||| |  | |||||||||||||||||||||||    
T  4613870 aaaagaatctatttgaaacttttgaaacttaaaggactaactcgaaaattttgtcaaactaaaaggact 4613802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 8713976 - 8713912
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaag 82  Q
    |||| |||||| |||||| |||  |||||||||||| ||| ||  ||||||||||||||||||||    
T  8713976 aaaatgatctatttgaaatttttgaaacttaaaagactaacttgtgaattttgtcaaactaaaag 8713912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 13771488 - 13771416
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaa 90  Q
    ||||| ||||| |||||||||| |||||||||| || ||| || | |||| ||||||||||||| || |||||    
T  13771488 aaaagaatctatttgaaacttttaaaacttaaatgactaacttgaaaattctgtcaaactaaaaagattaaaa 13771416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 36360149 - 36360225
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttggtctat 106  Q
    ||||||||||| |||||||||||| ||| ||   |||| ||||||||||||| ||| |||| || ||||||| ||||    
T  36360149 ttgaaactttcgaaacttaaaagactaacttggaaattctgtcaaactaaaatgaccaaaattggtatttggcctat 36360225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 30907144 - 30907062
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||| ||||||||||||||| |||||||||||| ||| || |||||| ||||||||||||| ||| |||||||||||||||    
T  30907144 aaaaggacctaattgaaactttcgaaacttaaaagactaacttgagaattctgtcaaactaaaa-gaccaaaaatgatatttgg 30907062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 27893622 - 27893700
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttggtct 104  Q
    ||||||||||||| | ||||||||| || ||| || |||||||||||||||||||||||| |||| |||||||||||||    
T  27893622 ctaattgaaacttacgaaacttaaaggactaacttgagaattttgtcaaactaaaaggaccaaaagtgatatttggtct 27893700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 30907368 - 30907451
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||| ||||||||||||||| ||||||||| || ||| |||  ||||||||||||||||||||| ||||| || |||||||    
T  30907368 aaaaggacctaattgaaactttcgaaacttaaatgactaacttataaattttgtcaaactaaaaggattaaaagtggtatttgg 30907451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 37543133 - 37543216
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    |||||||  ||||||||||||||||||||||||||| ||| || | |||| |||||||||||||| || ||||||| |||||||    
T  37543133 aaaaggacttaattgaaactttcaaaacttaaaagactaacttgaaaattctgtcaaactaaaagaaccaaaaatggtatttgg 37543216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 19080691 - 19080617
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||||||||||||||||||||| |||||||| | ||||| |||| |||||||| ||| ||||||| ||||||    
T  19080691 ctaattgaaactttcaaaacttaaaggattaattaaggaattctgtcgaactaaaatgaccaaaaatggtatttg 19080617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 19081069 - 19081124
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaa 81  Q
    ||||||||||||||| |||||||||||| |||||| |||||| |||||||||||||    
T  19081069 ctaattgaaactttcgaaacttaaaagactaatttgagaattctgtcaaactaaaa 19081124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 16781102 - 16781184
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaa-gattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| |||||| ||||||||||||||||||| || ||| || |||||| ||||||||||||| ||| |||| ||||||||    
T  16781102 aaaaggacctaattaaaactttcaaaacttaaaaggactaacttgagaattctgtcaaactaaaatgaccaaaagtgatattt 16781184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 34336327 - 34336409
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||  ||| |||||||||| ||| ||||| || |||||| |||||| ||||||||||||||||| |||| |||||||||    
T  34336327 aaaaggacttaactgaaactttcgaaatttaaaggactaatttgagaattctgtcaaactaaaaggaccaaaagtgatatttg 34336409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 15506015 - 15505950
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaat 92  Q
    ||||||||||||||| |||||||| || |||||||| |||| |||||||||||||| || ||||||    
T  15506015 taattgaaactttcataacttaaaggagtaatttaaaaattctgtcaaactaaaagaaccaaaaat 15505950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 31263995 - 31263906
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaa-tgatatttggtctat 106  Q
    ||||||| ||||||||||||||| ||||||||| |||||| ||   |||| ||||||||||||| ||| ||||| |||||||||| ||||    
T  31263995 aaaaggacctaattgaaactttcgaaacttaaaggattaacttggaaattctgtcaaactaaaaagaccaaaaagtgatatttggcctat 31263906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 34336096 - 34336039
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaagga 84  Q
    |||||||||||||||||||||||| || |||||| | |||||| ||||||||||||||    
T  34336096 taattgaaactttcaaaacttaaaggactaatttgaaaattttatcaaactaaaagga 34336039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 8260455 - 8260392
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaa 81  Q
    |||| |||||||||||||||||| ||||||||| || |||||| |||||| ||| |||||||||    
T  8260455 aaaatgatctaattgaaactttcgaaacttaaaggactaatttgagaattctgtaaaactaaaa 8260392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 27893105 - 27893038
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    |||| ||| |||||||||||||| ||| ||||| |||||| || |||||| |||||||||||||||||    
T  27893105 aaaaagatataattgaaactttcgaaatttaaaggattaacttgagaattctgtcaaactaaaaggac 27893038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 30907204 - 30907137
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||||||| ||||||||||  ||||||||| || ||| || |||||| |||||||||||||||||    
T  30907204 aaaaggatctatttgaaacttttgaaacttaaaggactaacttgagaattatgtcaaactaaaaggac 30907137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 39376244 - 39376161
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||||||| |||||||||||||||||| || ||  || || |||||| ||| ||||||||| ||| ||||||| |||||||    
T  39376244 aaaaggatctagttgaaactttcaaaacttgaaggaccaacttgagaattatgttaaactaaaatgacaaaaaatggtatttgg 39376161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 15506101 - 15506049
Alignment:
Q  33 aaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    |||||||  ||||||||| ||||||||| |||||| |||||||||||||||||    
T  15506101 aaactttttaaacttaaaggattaatttgagaattatgtcaaactaaaaggac 15506049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 5116951 - 5116908
Alignment:
Q  42 aaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||||| || |||||||| ||||||||||||||||||||||    
T  5116951 aaacttaaaggactaatttaaaaattttgtcaaactaaaaggac 5116908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 34429751 - 34429684
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||| |||||||||| |||| ||| ||||| || ||| || |||||| |||||||||||||||||    
T  34429751 aaaaggacctaattgaaattttcgaaatttaaaggactaacttgagaattctgtcaaactaaaaggac 34429684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 32341454 - 32341380
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||| ||| |||| ||| ||||| |||||| ||||||||  |||||||||||||| || |||| ||||||||||    
T  32341454 taattcaaattttcgaaatttaaaggattaacttaagaatcctgtcaaactaaaagaaccaaaagtgatatttgg 32341380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 36196565 - 36196636
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||||||||||| ||||||||| || ||||||  |||  |||||||||||||||||| |||| | ||||||    
T  36196565 ctaattgaaactttcgaaacttaaaggactaattt--gaaaattgtcaaactaaaaggaccaaaagtaatattt 36196636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 31264056 - 31263988
Alignment:
Q  17 aaaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    |||||| | ||| ||||||||||  ||||||||| || ||| || |||||| |||||||||||||||||    
T  31264056 aaaaagaacctatttgaaacttttgaaacttaaaggactaacttgagaattctgtcaaactaaaaggac 31263988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 39301180 - 39301133
Alignment:
Q  52 gattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||||||||||| |||||||||||||  ||| |||||||||||||    
T  39301180 gattaatttaagaattatgtcaaactaaaaacact-aaaatgatatttg 39301133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 28630677 - 28630742
Alignment:
Q  25 tctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaa 90  Q
    ||||||||||||||||||||||||||| | ||| ||| ||||| ||||||||||||||||| ||||    
T  28630677 tctaattgaaactttcaaaacttaaaaaactaacttaggaattatgtcaaactaaaaggaccaaaa 28630742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 17180192 - 17180275
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    |||||||  ||||| |||||||| ||||||||| ||||||||||| |||| | | ||||||||||||| ||||||| |||||||    
T  17180192 aaaaggacataattaaaactttcgaaacttaaaggattaatttaaaaattatataaaactaaaaggaccaaaaatggtatttgg 17180275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 9902318 - 9902400
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||  ||||| |||||||| |||||||||||| ||| || | |||| |||||||||||||| || ||||||||||||||    
T  9902318 aaaaggacataattaaaactttcgaaacttaaaagactaacttgaaaattctgtcaaactaaaagaaccaaaaatgatatttg 9902400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 10862650 - 10862708
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    |||||||||||||||||||||||| || ||| || |||||| |||||||||||||||||    
T  10862650 taattgaaactttcaaaacttaaaggactaacttgagaattctgtcaaactaaaaggac 10862708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 11527607 - 11527526
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| ||||||||||||||| ||||||||| || ||| ||| ||||| ||||||| ||||||||| |||| || |||||    
T  11527607 aaaaggacctaattgaaactttcgaaacttaaaggactaacttaggaattatgtcaaagtaaaaggaccaaaagtggtattt 11527526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 32417531 - 32417459
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||| |||||||| ||||||||| || ||| || | |||| ||||||||||||||||| |||||||||||||    
T  32417531 taattaaaactttcgaaacttaaaggactaacttgaaaattctgtcaaactaaaaggaccaaaaatgatattt 32417459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 32423372 - 32423300
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||| |||||||| ||||||||| || ||| || | |||| ||||||||||||||||| |||||||||||||    
T  32423372 taattaaaactttcgaaacttaaaggactaacttgaaaattctgtcaaactaaaaggaccaaaaatgatattt 32423300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 10962809 - 10962746
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaa 81  Q
    ||||||||||||||||||||||| |||||| | ||| ||| ||  |||||||||||||||||||    
T  10962809 aaaaggatctaattgaaactttcgaaactttacagaataactttggaattttgtcaaactaaaa 10962746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 16168528 - 16168453
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||||||||||||||||||||| || |||  | |||||| | ||||||||||||||| |||| || |||||||    
T  16168528 ctaattgaaactttcaaaacttaaaggactaacgtgagaattctatcaaactaaaaggaccaaaagtggtatttgg 16168453  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 2839696 - 2839615
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| ||||||||||||||  ||||||||| || ||| || |||||| | ||||| ||||||||| |||| ||||||||    
T  2839696 aaaaggacctaattgaaacttttgaaacttaaacgactaacttgagaattctttcaaattaaaaggaccaaaagtgatattt 2839615  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 17180132 - 17180199
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    |||| |||||| |||||||||| |||||||||| || ||| || | |||| |||||||||||||||||    
T  17180132 aaaatgatctatttgaaacttttaaaacttaaaggactaacttgaaaattatgtcaaactaaaaggac 17180199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 2840105 - 2840186
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||||||| | ||||||||  ||||||||| || ||| || |||||| ||| ||||||||||||| |||  ||||||||    
T  2840105 aaaaggatctattcgaaacttttgaaacttaaatgactaacttgagaattatgttaaactaaaaggaccaaacgtgatattt 2840186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 10407368 - 10407308
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaa 90  Q
    ||||||||||  |||||||||  | |||  || ||||||||||||||||||||||||||||    
T  10407368 ttgaaacttttgaaacttaaagcagtaacataggaattttgtcaaactaaaaggactaaaa 10407308  T

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Target: scaffold0041 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 45196 - 45263
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||||||| |||||||||| |||||||||| || |||||| | |||| |||||||||||||||||    
T  45196 aaaaggatctatttgaaacttttaaaacttaaatgactaatttgaaaattatgtcaaactaaaaggac 45263  T

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Target: scaffold0041; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 45256 - 45323
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||| |||||||||||||| ||||||||||||| ||| || |||||| |||||||| ||||||||    
T  45256 aaaaggacctaattgaaacttttaaaacttaaaagactaacttgagaattatgtcaaaccaaaaggac 45323  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 14235639 - 14235556
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||| |||||| ||||||| | |||||||| || ||| |||| |||| | ||||||||||||||| |||||||||||||||    
T  14235639 aaaaggacctaattaaaacttttagaacttaaaggactaacttaaaaattatttcaaactaaaaggaccaaaaatgatatttgg 14235556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 32459848 - 32459929
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| ||| |||||| ||| ||||||||||||| |||||| ||||||  ||||||| ||||||||||||| || |||||    
T  32459848 aaaaggacctatttgaaatttttaaaacttaaaagactaatttgagaattcggtcaaacgaaaaggactaaaagtggtattt 32459929  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 13543147 - 13543083
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaa 90  Q
    ||||||||||||||| |||||||||  ||||| ||| ||||| ||||||||||||||||| ||||    
T  13543147 ctaattgaaactttcgaaacttaaagaattaacttaggaattatgtcaaactaaaaggaccaaaa 13543083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 18249014 - 18248947
Alignment:
Q  33 aaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||||||||| ||||||||||| |||| |||| | ||||||||||||||| |||| || ||||||    
T  18249014 aaactttcaaaacgtaaaagattaacttaaaaattctatcaaactaaaaggaccaaaagtggtatttg 18248947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 5734525 - 5734451
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||||||||||||||||||||  | ||| |||| ||||  |||||| ||||||||| ||| |||||||||||    
T  5734525 taattgaaactttcaaaacttaaagaagtaacttaaaaattcagtcaaattaaaaggaccaaacatgatatttgg 5734451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 19279236 - 19279290
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaagga 84  Q
    ||||||||||  |||||||||| | ||| ||||||||||||||||||||||||||    
T  19279236 ttgaaacttttgaaacttaaaaaactaacttaagaattttgtcaaactaaaagga 19279290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 35190465 - 35190546
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||||| |||||||||||||||||||||||||  | ||| || | |||| ||||||| ||||||||| |||  ||||||||    
T  35190465 aaaaggacctaattgaaactttcaaaacttaaagaagtaacttgaaaattctgtcaaattaaaaggaccaaacgtgatattt 35190546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 38405597 - 38405670
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||||||||| ||||||||| |||||| ||  ||||| ||| ||||||||||||  ||||||| ||||||    
T  38405597 taattgaaactttcgaaacttaaatgattaacttgggaattctgtgaaactaaaaggatcaaaaatggtatttg 38405670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 13538532 - 13538468
Alignment:
Q  26 ctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaa 90  Q
    ||||||||||||||| |||| |||| || ||| ||| ||||| ||||||||||||||||| ||||    
T  13538532 ctaattgaaactttcgaaacgtaaaggactaacttaggaattatgtcaaactaaaaggaccaaaa 13538468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 35190429 - 35190472
Alignment:
Q  42 aaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  35190429 aaacttaaaagacaaatttgagaattttgtcaaactaaaaggac 35190472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 18237968 - 18237919
Alignment:
Q  33 aaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaag 82  Q
    ||||||| |||||||||| |||||| |||| |||| ||||||||||||||    
T  18237968 aaacttttaaaacttaaaggattaacttaaaaattctgtcaaactaaaag 18237919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 1722619 - 1722567
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaag 82  Q
    ||||||||||  ||||||||| |||||| || |||||| ||||||||||||||    
T  1722619 ttgaaacttttgaaacttaaaggattaacttgagaattatgtcaaactaaaag 1722567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 30737856 - 30737808
Alignment:
Q  33 aaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaa 81  Q
    |||||||  |||||||||||| |||||| |||||| |||||||||||||    
T  30737856 aaacttttgaaacttaaaagactaatttgagaattatgtcaaactaaaa 30737808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 4276197 - 4276124
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||||||||||||||||||||  | ||| |||| ||| |||||||||||||||||| |||| | |||||||    
T  4276197 taattgaaactttcaaaacttaaagaactaacttaaaaatattgtcaaactaaaaggaccaaaagtaatatttg 4276124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 31247697 - 31247780
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttgg 101  Q
    ||||||| ||||||||||||||| ||||||||| || ||| ||   |||| ||||||| ||||||||| |||| ||||||||||    
T  31247697 aaaaggacctaattgaaactttcgaaacttaaaggactaacttggaaattctgtcaaattaaaaggaccaaaagtgatatttgg 31247780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 54456730 - 54456660
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||||||| ||||||||| || ||||||   |||| ||||||||||||||||  ||||||||||||||    
T  54456730 ttgaaactttcgaaacttaaatgactaatttcgaaattctgtcaaactaaaaggatcaaaaatgatatttg 54456660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 3088146 - 3088227
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    |||||||  |||||||||||||| ||| |||||  ||||| || | |||| ||||||||||||||||| |||||| ||||||    
T  3088146 aaaaggacataattgaaactttcgaaatttaaagcattaacttgaaaattctgtcaaactaaaaggaccaaaaataatattt 3088227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 21376628 - 21376551
Alignment:
Q  27 taattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttggtct 104  Q
    ||||| ||||||| |||| |||||||  ||| |||| | ||  |||||| ||||||||||||||||||||||||||||    
T  21376628 taattaaaacttttaaaatttaaaagtctaacttaaaagttcagtcaaattaaaaggactaaaaatgatatttggtct 21376551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 50530293 - 50530235
Alignment:
Q  42 aaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    |||||||||||| ||| || | |||| ||||||||||||||||  ||||||||||||||    
T  50530293 aaacttaaaagactaagttgaaaattctgtcaaactaaaaggatcaaaaatgatatttg 50530235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 54456908 - 54456989
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatattt 99  Q
    ||||| ||||||||||| ||||| ||||||||| |  ||| || |||||| | | ||||||||||||| |||| ||||||||    
T  54456908 aaaagaatctaattgaagctttctaaacttaaagggctaacttgagaattctattaaactaaaaggaccaaaagtgatattt 54456989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 124410 - 124500
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttggtctattg 108  Q
    ||||||| ||||||||||||||| ||||||||| || ||| ||  ||||| | |||||| |||||||| |||| || ||||||| ||||||    
T  124410 aaaaggacctaattgaaactttcgaaacttaaaggactaacttgggaattatatcaaacaaaaaggaccaaaagtggtatttggcctattg 124500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 124202 - 124132
Alignment:
Q  30 ttgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggactaaaaatgatatttg 100  Q
    ||||||||||  ||||||||| || ||| ||  ||||||||||||||||||||||| |||| || ||||||    
T  124202 ttgaaacttttgaaacttaaaggactaacttgggaattttgtcaaactaaaaggaccaaaagtggtatttg 124132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 588 - 655
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||| ||||||||||||||||||||||||| || ||| || | |||| | ||||| |||||||||    
T  588 aaaaggacctaattgaaactttcaaaacttaaaggactaacttgaaaattctatcaaattaaaaggac 655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 28615 - 28548
Alignment:
Q  18 aaaaggatctaattgaaactttcaaaacttaaaagattaatttaagaattttgtcaaactaaaaggac 85  Q
    ||||||| ||||||||||||||||||||||||| || ||| ||   |||| ||||||| |||||||||    
T  28615 aaaaggacctaattgaaactttcaaaacttaaaggactaacttggaaattctgtcaaattaaaaggac 28548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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