View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_348 (Length: 203)
Name: NF0154_2D_low_348
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_348 |
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Alignment Details
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 15807033 - 15806970
Alignment:
| Q |
125 |
ttaccttctcgagtttgtgcaacaggtaagtcttgaattgacgaacaccacgcccacttgatgt |
188 |
Q |
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| T |
15807033 |
ttaccttttcgagtttgtgcaataggtaagtcttgaattgacgaacaccacgcccacttgatgt |
15806970 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 15807086 - 15807156
Alignment:
| Q |
2 |
ccaatctggtaatgattagtgtctcatggttgcaggaaggagagcttacagagaaacatactaaaagaagt |
72 |
Q |
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| T |
15807086 |
ccaagctggtaattatgagtgtctcatggttgcaggaaggagagcttacagaaaaacatactaaaagaagt |
15807156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 45927984 - 45927874
Alignment:
| Q |
66 |
aagaagtaatgtaccatgttcaaaatattgaagaatagcgagaaata-aaactagtcagcttaccttctcgagtttgtgcaacaggtaagtcttgaattg |
164 |
Q |
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||||||||| ||||| |||||||||||||||||| |||| |||| ||| || ||| ||||| | ||||||||||||||||||| ||||||||||| |
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| T |
45927984 |
aagaagtaacataccaccttcaaaatattgaagaattgcgataaattcaaattattcactttaccctttcgagtttgtgcaacaggttagtcttgaattc |
45927885 |
T |
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| Q |
165 |
acgaacaccac |
175 |
Q |
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| T |
45927884 |
acgaacaccac |
45927874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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