View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_35 (Length: 675)
Name: NF0154_2D_low_35
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 1 - 659
Target Start/End: Complemental strand, 11791185 - 11790527
Alignment:
| Q |
1 |
agaattgcacttggtatggcaagggcaattgcatatctacacgaggagtgtttagaatgggttttgcattgtgatatcaagccagaaaacattctcttag |
100 |
Q |
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| T |
11791185 |
agaattgcacttggtatggcaagggctattgcgtatctacatgaggagtgtttggaatgggttttgcattgtgatattaagccagaaaacattctcttag |
11791086 |
T |
|
| Q |
101 |
gcgatgattgttgtcctaagatatcggattttggattggcgaaactaaggaaaaaagaagacatggtgactatgtcaagaaggagaggaactcctggtta |
200 |
Q |
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| T |
11791085 |
gcgatgattgttgtcctaagatatcggattttggattggcgaaactaaggaaaaaagaagacatggtgactatgtcaagaaggagaggaactcctggtta |
11790986 |
T |
|
| Q |
201 |
tatggcacctgaatggataacagcagatccaataacttctaaagctgatgtttatagtttcggcatggtgttgttggagcttgtgagtggagtgaggaac |
300 |
Q |
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| T |
11790985 |
tatggcacctgaatggataacagcagatccaataacttctaaagctgatgtttatagttttggtatggtgttgttggagcttgtgagtggagtgaggaac |
11790886 |
T |
|
| Q |
301 |
ttcgagattcaaggctctgtggcgaggagtgatgaatggtattttcctggatgggcttttgataagatgtttaaggaaatgagagttgaagaaattcttg |
400 |
Q |
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| T |
11790885 |
ttcgagattcaaggctctgtggcgaggagtgatgaatggtattttcctggatgggcttttgataagatgtttaaggaaatgagagttgaagaaattcttg |
11790786 |
T |
|
| Q |
401 |
atagtcaaatttgtcatgcttatgatagtaaagcacattttcaattggttaacagaatggtgaagactgcgatgtggtgtttgcaagataggcctgaggc |
500 |
Q |
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| T |
11790785 |
atagtcaaatttgtcatgcttatgatagtaaagcacattttcaattggttaacagaatggtgaagactgcgatgtggtgcttgcaagataggcctgaggc |
11790686 |
T |
|
| Q |
501 |
aaggccaacaatggggaaagttgctaagatgatagaagggactgtggagatcatggatcctaagaaaccaacagttttcttccttggggaagagtagttt |
600 |
Q |
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| T |
11790685 |
aaggccaacaatggggaaagttgctaagatgatagaagggactgtggagatcatggatcctaagaaaccaacagttttcttccttggggaagagtagttt |
11790586 |
T |
|
| Q |
601 |
gattgttaatgatgttttatattcaagtcttgtgtagcaccaacacttcaaattgatgt |
659 |
Q |
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| T |
11790585 |
gattgttaatgatgttttatattcaagtcctctgtagcaccgacacttcaaattaatgt |
11790527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 21108324 - 21108385
Alignment:
| Q |
31 |
gcatatctacacgaggagtgtttagaatgggttttgcattgtgatatcaagccagaaaacat |
92 |
Q |
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| T |
21108324 |
gcatatctacatgaagaatgtttggagtggattttgcattgtgatataaagccacaaaacat |
21108385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 21130501 - 21130449
Alignment:
| Q |
31 |
gcatatctacacgaggagtgtttagaatgggttttgcattgtgatatcaagcc |
83 |
Q |
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| T |
21130501 |
gcatatctacatgaagaatgtttggaatggattttgcattgtgatataaagcc |
21130449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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