View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_354 (Length: 201)

Name: NF0154_2D_low_354
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_354
NF0154_2D_low_354
[»] chr4 (1 HSPs)
chr4 (1-188)||(47705018-47705205)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 47705205 - 47705018
Alignment:
Q  1 tatcaattaccctttagtgatgttcttgattggagcaaattttcattgcatattccatcaaagaggataagtgaaatcaagacaatattgaaaagtgttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47705205 tatcaattaccctttagtgatgttcttgattggagcaaattttcattgcatattccatcaaagaggataagtgaaatcaagacaatattaaaaagtgttc 47705106  T
Q  101 cacatgccagatacttgaaattgcataggagggtgttgaaagttcaaagacattttgtgttgaatccaccagctaaaccatttgatgt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47705105 cacatgccagatacttgaaattgcataggagggtgttgaaagttcaaagacattttgtgttgaatccaccagctaaaccatttgatgt 47705018  T

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