View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_36 (Length: 660)
Name: NF0154_2D_low_36
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 12351358 - 12351854
Alignment:
| Q |
1 |
gttttgtttgtcctctgatgtctgcttgtggtgacctcagatttgggtccatctcgtcgaaagttagtgtctagtttcaagtttttgggttggttatggt |
100 |
Q |
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|||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12351358 |
gttttgtttgtcctctactgtctacttgtgctgacctcagatttgggtccatctcgtcgaaagttagtgtctagtttcaagtttttgggttggttatggt |
12351457 |
T |
|
| Q |
101 |
gtcatctccagtagtctggagttgaggggtgccttaatgatttgttcctaatgtatggtaggctgatcactttt----caagttcaggagtcaatttcta |
196 |
Q |
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| T |
12351458 |
gtcatctccagtagtctggagttgaggggtgccttaatgatttgtttctaatgtatggtaggctgatcacttttgcttcaaaatcaggagtcaatttcta |
12351557 |
T |
|
| Q |
197 |
gaccaaaactatttgagcttgtcttgctgtcttcgttatagaaacgagggtcgattggtggcagaatccgaatgagtgttggattaagtgttatcgggtg |
296 |
Q |
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| T |
12351558 |
gaccaaaaatatttgagcttgtcttgctgtcttcgttatagaaacgagggtcaattggtggcagaatccgaatgagtgttggattaagtgttatcgggtg |
12351657 |
T |
|
| Q |
297 |
tttatttgggctcaaacgtgggaagagtaggtaaggtgatattatcgaggatttggtcgttttgattgtgtttggaagggtttttagtgcaagtagcagt |
396 |
Q |
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| T |
12351658 |
tttatttgggctcatacgtgggaagagtaggtaaggtgatattatcgaggatttggtcgttttgattgtgtttggaagggtttttggtgcaagtagcagt |
12351757 |
T |
|
| Q |
397 |
taataggtgtttgaaacactcttcaatggtcatttgtgatggagtttaagatttttgcttaactttggtttctaaagttgtgtaggagtttgacatt |
493 |
Q |
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| T |
12351758 |
taataggtgtttgaaactctcttcgatggtcattcgtgatggagtttaagatttttgcttaactttggtttctaatgttgtgtagggatttgacatt |
12351854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 30127181 - 30127223
Alignment:
| Q |
61 |
aagttagtgtctagtttcaagtttttgggttggttatggtgtc |
103 |
Q |
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| T |
30127181 |
aagttagtgtctagtttcaagtttttgggttggttaaggtgtc |
30127223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 7171219 - 7171169
Alignment:
| Q |
3 |
tttgtttgtcctctgatgtctgcttgtggtgacctcagatttgggtccatc |
53 |
Q |
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| T |
7171219 |
tttgtttttcttctgctgtctgcttgtggtgacctcaaatttgggtccatc |
7171169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 7170989 - 7170905
Alignment:
| Q |
64 |
ttagtgtctagtttcaagtttttgggt-tggttatggtgtcatctccagtagtct-ggagttgaggggtgccttaatgatttgtt |
146 |
Q |
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| T |
7170989 |
ttagtgtctatttccaagttttcggggctagttatggtgtcttcttcagtggtctaggagttgaggggtgccttagtgatttgtt |
7170905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 33311961 - 33312012
Alignment:
| Q |
260 |
gaatccgaatgagtgttggattaagtg-ttatcgggtgtttatttgggctca |
310 |
Q |
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| T |
33311961 |
gaatccgaatgaatgttggaataagtgtttttcgggtgtttatttgggctca |
33312012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 27335518 - 27335472
Alignment:
| Q |
64 |
ttagtgtctagtttcaagtttttgggttggttatggtgtcatctcca |
110 |
Q |
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| T |
27335518 |
ttagtgcctagtttcaagattttgggttggttatgatgtcttctcca |
27335472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 16055350 - 16055288
Alignment:
| Q |
72 |
tagtttcaagtttttgggttggttatggtgtcatctccagtagtctggagttgaggggtgcct |
134 |
Q |
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| T |
16055350 |
tagttccaaatttttgggcttgttatggtgttatatccagtagtctgcagttgaagggtgcct |
16055288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 290 - 413
Target Start/End: Original strand, 11549806 - 11549930
Alignment:
| Q |
290 |
tcgggtgtttatttgggctcaaacgtgggaagagtaggtaaggtgatattatcgagga-tttggtcgttttgattgtgtttggaagggtttttagtgcaa |
388 |
Q |
| |
|
||||||||||||||||||||| ||| ||| | |||||||||||| |||| |||| |||||| |||||| || ||| | |||| |||| |||| | |
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| T |
11549806 |
tcgggtgtttatttgggctcagttgtgcgaatataaggtaaggtgatgttatataggagtttggtttatttgatggttttttggaggggttttggtgcga |
11549905 |
T |
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| Q |
389 |
gtagcagttaataggtgtttgaaac |
413 |
Q |
| |
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| T |
11549906 |
gtagcagttgataggtgattgaaac |
11549930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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