View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_40 (Length: 642)
Name: NF0154_2D_low_40
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 118 - 444
Target Start/End: Complemental strand, 11834127 - 11833802
Alignment:
| Q |
118 |
tattcccattcttccaagaaaagcttagattagagaatcaatcaattgtaattgtaaagcatattttgcttactttatgatgtttagtattttgattcct |
217 |
Q |
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| T |
11834127 |
tattcccattcttccaagaaaagcttagattagagaatcaatcaattgtaattgtaaagcatattttgcttactttatgatgtttagtattttgattcct |
11834028 |
T |
|
| Q |
218 |
aaataaaaacgattggcctttattaggttcttaannnnnnnnattgactttatttttcattactgcattgaatttgaaaatattatatacataaggaatc |
317 |
Q |
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| T |
11834027 |
aaataaaaacgattggcctttattaggttcttaattttttttattgactttatttttcattactgcattgaatttgaaaatattatatacataaggaatc |
11833928 |
T |
|
| Q |
318 |
ggtcttaaatttgaaatatctaggatctggatcctctcctacgctactcgtccatgtaatcatctcttttgcgttatggctagaagttggattaatccaa |
417 |
Q |
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| T |
11833927 |
ggtcttaaatttgaaatat-taggatctggatcctctcctacgctactcgtccatgtaatcatctcttttgcgttatggctagaagttggattaatccaa |
11833829 |
T |
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| Q |
418 |
caactaagagacatacatatagagaga |
444 |
Q |
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| T |
11833828 |
caactaagagacatacatatagagaga |
11833802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 453 - 642
Target Start/End: Complemental strand, 11833775 - 11833586
Alignment:
| Q |
453 |
gaacccgaacaaagagatctagaaagcactaggaagaaatctttctaccatttcacccataaccgttatccatctaacgacaatgcatgacgtcaatgac |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11833775 |
gaacccgaacaaagagatctagaaagcactaggaagaaatctctctaccatttcacccataaccgttatccatctaacgacaatgcatgacgtcgatgac |
11833676 |
T |
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| Q |
553 |
atggattttgaatgtggggcattatcgtgtgaacggtggctttgccactatgcatagttttccatactttcggatctgcaacgttgatgt |
642 |
Q |
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| T |
11833675 |
atggattttgaatgtggggcattatcgtgtcaacggtggcttcgccactatgcatagctttccatactttcggatctgcaacgttgatgt |
11833586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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