View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_43 (Length: 639)
Name: NF0154_2D_low_43
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_43 |
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| [»] scaffold0366 (1 HSPs) |
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| [»] scaffold0459 (1 HSPs) |
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Alignment Details
Target: scaffold0366 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 20 - 620
Target Start/End: Complemental strand, 7736 - 7136
Alignment:
| Q |
20 |
caaggtcatggttatatggaacaggtttgtcaagaaaactcttggtgataatttgaggctttgagccatcattagtggatttggattcagccacatcttg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7736 |
caaggtcatggttatatggaacaggtttgtcaagaaaactcttggtgataatttgaggctttgagccatcattagtggatttggattcagccacatcttg |
7637 |
T |
|
| Q |
120 |
gactgcccatattttaatttcttttaaaaatatcgaacttgaagtatcgactgtccaattttgatccgacagtccagatgtggccatctatatgcagtca |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7636 |
gactgcccatattttaatttcttttaaaaatatcgaacttgaagtatcgactgtccaattttgatccgacagtccagatgtggccatctatatgcagtca |
7537 |
T |
|
| Q |
220 |
tgaggttgcgactgcacacaacccggatcaatcattaccatggttggagtaaggaatctgacattgtttgtttattgagcaggttggttgagaagtttca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7536 |
tgaggttgcgactgcacacaacccggatcaatcattaccatggttggagtaaggaatctgacattgtttgtttattgagcaggttggttgagaagtttca |
7437 |
T |
|
| Q |
320 |
ttgcagactatggagtaccattcttggtagtggtgtggacagctttatcatttacagtagtagcgtaaagtaccttctggagttccaagaagactcgttg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7436 |
ttgcagactatggagtaccattcttggtagtggtgtggacagctttatcatttacagtagtagcgtaaagtaccttctggagttccaagaagactcgttg |
7337 |
T |
|
| Q |
420 |
cacccttggcttgggaatctgcatcattacatcactggacagtaatcaaagtaaaacaacttatagcttattgaaaaccattggactttattatatcttt |
519 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7336 |
cacctttggcttgggaatctgcatcattacatcactggacagtaatcaaagtaaaacaacttatagcttattgaaaaccattggactttattatatcttt |
7237 |
T |
|
| Q |
520 |
tgtttgataaatatcttacacataagcgctttaactaagttgtttatccaaacatggcgtagttttggaagttactgacataatttctactgcaggatat |
619 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7236 |
tgtttgataaatatcttacacataagcgctttaactaagttgtttatccaaacatgacgtagttttggaagttactgacataatttctactgcaggatat |
7137 |
T |
|
| Q |
620 |
g |
620 |
Q |
| |
|
| |
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|
| T |
7136 |
g |
7136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 20 - 620
Target Start/End: Complemental strand, 7740 - 7138
Alignment:
| Q |
20 |
caaggtcatggttatatggaacaggtttgtcaagaaaactcttggtgataatttgaggctttgagccatcattagtggatttggattcagccacatcttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7740 |
caaggtcatggttatatggaacaggtttgtcaagaaaactcttggtgataatttgaggctttgagccatcattagtggatttggattcagccacatcttg |
7641 |
T |
|
| Q |
120 |
gactgcccatattttaatttcttttaaaaatatcgaacttgaagtatcgactgtccaattttgatccgacagtccagatgtggccatctatatgcagtca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7640 |
gactgcccatattttaatttcttttaaaaatatcgaacttgaagtatcgactgtccaattttgatccgacagtccagatgtggccatctatatgcagtca |
7541 |
T |
|
| Q |
220 |
tgaggttgcgactgcacacaacccggatcaatcattaccatggttggagtaaggaatctgacattgtttgtttattgagcaggttggttgagaagtttca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7540 |
tgaggttgcgactgcacacaacccggatcaatcattaccatggttggagtaaggaatctgacattgtttgtttattgagcaggttggttgagaagtttca |
7441 |
T |
|
| Q |
320 |
ttgcagactatggagtaccattcttggtagtggtgtggacagctttatcatttacagtagtagc--gtaaagtaccttctggagttccaagaagactcgt |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
7440 |
ttgcagactatggagtaccattcttggtagtggtgtggacagctttatcatttacagtagtagcaagtaaagtaccttctggagttccaagaagactcgt |
7341 |
T |
|
| Q |
418 |
tgcacccttggcttgggaatctgcatcattacatcactggacagtaatcaaagtaaaacaacttatagcttattgaaaaccattggactttattatatct |
517 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340 |
tgcacctttggcttgggaatctgcatcattacatcactggacagtaatcaaagtaaaacaacttatagcttattgaaaaccattggactttattatatct |
7241 |
T |
|
| Q |
518 |
tttgtttgataaatatcttacacataagcgctttaactaagttgtttatccaaacatggcgtagttttggaagttactgacataatttctactgcaggat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7240 |
tttgtttgataaatatcttacacataagcgctttaactaagttgtttatccaaacatgacgtagttttggaagttactgacataatttctactgcaggat |
7141 |
T |
|
| Q |
618 |
atg |
620 |
Q |
| |
|
||| |
|
|
| T |
7140 |
atg |
7138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 573
Target Start/End: Original strand, 49546577 - 49546646
Alignment:
| Q |
503 |
gactttattatatcttttgtttgataaatatcttacacataagcgctttaactaagttgtttatccaaaca |
573 |
Q |
| |
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||||||||| ||||||||||| | ||||||||||||||||||| | |||| || |||||||||||||||| |
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| T |
49546577 |
gactttattttatcttttgttataaaaatatcttacacataagcac-ttaagtaggttgtttatccaaaca |
49546646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 575
Target Start/End: Original strand, 20192664 - 20192767
Alignment:
| Q |
472 |
aaaacaacttatagcttat-tgaaaaccattggactttattatatcttttgtttgataaatatcttacacataagcgctttaactaagttgtttatccaa |
570 |
Q |
| |
|
|||||| ||||||| |||| ||||||| || ||||||||| ||||||||||| ||||||| |||| |||||||| | |||| | || ||||||||||| |
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|
| T |
20192664 |
aaaacagcttatagattatatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcac-ttaattgagctgtttatccaa |
20192762 |
T |
|
| Q |
571 |
acatg |
575 |
Q |
| |
|
||||| |
|
|
| T |
20192763 |
acatg |
20192767 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 523
Target Start/End: Complemental strand, 18630692 - 18630640
Alignment:
| Q |
472 |
aaaacaacttatagcttat-tgaaaaccattggactttattatatcttttgtt |
523 |
Q |
| |
|
||||||||||||||||||| ||||||||| | ||||||||| ||||||||||| |
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|
| T |
18630692 |
aaaacaacttatagcttatatgaaaaccaattgactttattttatcttttgtt |
18630640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 523
Target Start/End: Complemental strand, 10192296 - 10192244
Alignment:
| Q |
472 |
aaaacaacttatagcttat-tgaaaaccattggactttattatatcttttgtt |
523 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
10192296 |
aaaacaacttataacttatatgaaaacaatttgactttattctatcttttgtt |
10192244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 523
Target Start/End: Complemental strand, 11513910 - 11513858
Alignment:
| Q |
472 |
aaaacaacttatagcttat-tgaaaaccattggactttattatatcttttgtt |
523 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
11513910 |
aaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt |
11513858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 42181151 - 42181202
Alignment:
| Q |
473 |
aaacaacttatagcttat-tgaaaaccattggactttattatatcttttgtt |
523 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| || ||||||||||| |
|
|
| T |
42181151 |
aaacaacttatagcttatatgaaaaccatttgactttgttttatcttttgtt |
42181202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 573
Target Start/End: Original strand, 12224989 - 12225058
Alignment:
| Q |
503 |
gactttattatatcttttgtttgataaatatcttacacataagcgctttaactaagttgtttatccaaaca |
573 |
Q |
| |
|
||||||||| |||||||||| | | ||||| |||| |||||||| ||| || ||||||||||||||||||| |
|
|
| T |
12224989 |
gactttattttatcttttgtcttagaaataacttatacataagctctt-aattaagttgtttatccaaaca |
12225058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 532
Target Start/End: Complemental strand, 1417276 - 1417215
Alignment:
| Q |
472 |
aaaacaacttatagcttat-tgaaaaccattggactttattatatcttttgtttgataaata |
532 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
1417276 |
aaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttatataaata |
1417215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 523
Target Start/End: Original strand, 9527148 - 9527200
Alignment:
| Q |
472 |
aaaacaacttatagcttat-tgaaaaccattggactttattatatcttttgtt |
523 |
Q |
| |
|
|||||||||||||| |||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
9527148 |
aaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgtt |
9527200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 523
Target Start/End: Original strand, 27738238 - 27738290
Alignment:
| Q |
472 |
aaaacaacttatagcttat-tgaaaaccattggactttattatatcttttgtt |
523 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
27738238 |
aaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgtt |
27738290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 523
Target Start/End: Complemental strand, 30371160 - 30371108
Alignment:
| Q |
472 |
aaaacaacttatagcttat-tgaaaaccattggactttattatatcttttgtt |
523 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| || |||||| ||||||||||| |
|
|
| T |
30371160 |
aaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgtt |
30371108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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