View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_45 (Length: 632)
Name: NF0154_2D_low_45
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_45 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 15 - 628
Target Start/End: Complemental strand, 719062 - 718455
Alignment:
| Q |
15 |
atcaaaagaagtaggaataataaatcgaccactggaataagaaaatattaactatgttcaactgctcaagactaattcaagtaatttttattaagtaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
719062 |
atcaaaagaagtaggaataataaatcgaccactggaataagaaaatattaactatgttcaactgctcaagactaattcaagtaatttttaataagtaaac |
718963 |
T |
|
| Q |
115 |
ttttttggaacttaatcaaagatatattttatgaaatgactacttattctacctcaaacaaacaaatatatgttatgccgtagga----------gtcgt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
718962 |
ttttttggaacttaatcaaagatatattttatgaaatgactacttattctacctcaaacaaacagatatatgttatgccgtaggaaactaaatctgtcgt |
718863 |
T |
|
| Q |
205 |
atgaataaggaaaatttcaaacctacatgatatatttcactttgtggttcttaccaattttatacttcaaacaaatattaagttggtagagacaatacat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
718862 |
atgaataaggaaaatttcaaacctacatgatatatttcactttgtggttcttaccaattttatacttcaaacaaatattaagttggtagagacaatacat |
718763 |
T |
|
| Q |
305 |
tgtaatatatagtgatgtagagttcgaaatatggacatctcatttattcgtcttaaaagtgaaatctaactactatactacttgataaaaaa-tacttac |
403 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
718762 |
tataatatgtagtgatgtagagttcgaaatatggacatctcatttattcgtcttaaaagtaaaatctaactactatactacttgataaaaaattacttac |
718663 |
T |
|
| Q |
404 |
ttttactaacatatatacaagaccaacatatatacaagaccaatgtccatgaatattcaatttgttcttgaaaagaataatgtccaactactaataaaaa |
503 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
718662 |
ttttactaaca-----------------tatatacatgaccaatgtccatgaatattcaatttgttcttgaaaagaataatgtccaactactaataaaaa |
718580 |
T |
|
| Q |
504 |
atgtatgctttgattaattaaaatttactaggtctttacacgcttgtgcaactaaattaactatggacttgttcaatgtcacttgcttataaatagacat |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
718579 |
atgtatgctttgattaattaaaatttactaggtctttacacgctagtgcaactaaattaactatggacttgttcaatgtcacttgcttataaatagacat |
718480 |
T |
|
| Q |
604 |
tatgtttgcattgtgaaatatatca |
628 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
718479 |
tatgtttgcattgtgaaatatatca |
718455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 36383210 - 36383251
Alignment:
| Q |
356 |
cttaaaagtgaaatctaactactatactacttgataaaaaat |
397 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
36383210 |
cttaaatgtgaattttaactactatactacttgataaaaaat |
36383251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2007 times since January 2019
Visitors: 2203