View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_47 (Length: 624)
Name: NF0154_2D_low_47
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_47 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 19 - 617
Target Start/End: Complemental strand, 17860734 - 17860113
Alignment:
| Q |
19 |
caaacaaggtggaacacagcgtatataatgctagagggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagt |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17860734 |
caaacaaggtggaacacagcgtatttaatgctagatggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagt |
17860635 |
T |
|
| Q |
119 |
tttttggggaagctggtcctcctagtattcatgactaggagaatgttaggtgttttgtcaggtttctaa----------------------ggagttttc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17860634 |
tttttggggaagctggtcctcctagtattcatgactgggagaatgttaggtgttttgtcaggtttctaaaaattttctatgatgctaccaaggagttttc |
17860535 |
T |
|
| Q |
197 |
ctcatatcaggaagtgtctttgcacaaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaacacagttttagcc |
296 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17860534 |
ctcatctcaggaagtgtctttgcacaaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaacacagttttagct |
17860435 |
T |
|
| Q |
297 |
tcaatggggtctgacatgaagcagaaatacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgat |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17860434 |
tcaatggggtctgacatgaagcagaaatacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgat |
17860335 |
T |
|
| Q |
397 |
acaagtttagctatgtggagtggtgcttcaatgacatgtatggtgaccaacctacattttttactgatctgattgttgtgatccatactcagctgttcaa |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17860334 |
acaagtttagctatgtggagtggtgcttcaatgacatgtatggtgaccaacctacattttttactgatctgattgctgtgatccatactcagctgttcaa |
17860235 |
T |
|
| Q |
497 |
actgttcaattggtacaaggatgcctatgaccaacatcataattctggtcatccatctgcaactccatccgagtctagttatgttagcgtgaatgtgatc |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17860234 |
actgttcaattggtacaaggatgcctatgaccagcaacataattctggtcatccatctgcaagtccatccgagtctagttatgttagcgagaatgtgatc |
17860135 |
T |
|
| Q |
597 |
ctagctgatgt-ccatctcatt |
617 |
Q |
| |
|
| |||||| || |||||||||| |
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|
| T |
17860134 |
ccagctgaagtcccatctcatt |
17860113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 617
Target Start/End: Original strand, 34915078 - 34915699
Alignment:
| Q |
19 |
caaacaaggtggaacacagcgtatataatgctagagggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagt |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34915078 |
caaacaaggtggaacacagcgtatttaatgctagatggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagt |
34915177 |
T |
|
| Q |
119 |
tttttggggaagctggtcctcctagtattcatgactaggagaatgttaggtgttttgtcaggtttctaa----------------------ggagttttc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34915178 |
tttttggggaagctggtcctcctagtattcatgactgggagaatgttaggtgttttgtcaggtttctaaaaattttctatgatgctaccaaggagttttc |
34915277 |
T |
|
| Q |
197 |
ctcatatcaggaagtgtctttgcacaaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaacacagttttagcc |
296 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34915278 |
ctcatctcagggagtgtctttgcacaaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaacacagttttagct |
34915377 |
T |
|
| Q |
297 |
tcaatggggtctgacatgaagcagaaatacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgat |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34915378 |
tcaatggggtctgacatgaagcagaaatacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgat |
34915477 |
T |
|
| Q |
397 |
acaagtttagctatgtggagtggtgcttcaatgacatgtatggtgaccaacctacattttttactgatctgattgttgtgatccatactcagctgttcaa |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
34915478 |
acaagtttagctatgtggagtggtgcttcaatgacatgtatggtgaccaacctacattttttactgatctgattgctatgatccatactcagctgttcaa |
34915577 |
T |
|
| Q |
497 |
actgttcaattggtacaaggatgcctatgaccaacatcataattctggtcatccatctgcaactccatccgagtctagttatgttagcgtgaatgtgatc |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
34915578 |
actgttcaattggtacaaggatgcctatgaccagcaacataattctggtcatccatctgcaagtccatccgagtctagttatgttagcgagaatgtgatc |
34915677 |
T |
|
| Q |
597 |
ctagctgatgt-ccatctcatt |
617 |
Q |
| |
|
| |||||| || |||||||||| |
|
|
| T |
34915678 |
ccagctgaagtcccatctcatt |
34915699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 19 - 617
Target Start/End: Complemental strand, 4969265 - 4968644
Alignment:
| Q |
19 |
caaacaaggtggaacacagcgtatataatgctagagggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagt |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4969265 |
caaacaaggtggaacacagcgtatttaatgctagatggtgctgagaaattccaaccagcctttgagaagttggagggtgaagattctgggtatttggagt |
4969166 |
T |
|
| Q |
119 |
tttttggggaagctggtcctcctagtattcatgactaggagaatgttaggtgttttgtcaggtttctaa----------------------ggagttttc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4969165 |
tttttggggaagctggtcctcctagtattcatgactgggagaatgttaggtgttttgtcaggtttctaaaaattttctatgatgctaccaaggagttttc |
4969066 |
T |
|
| Q |
197 |
ctcatatcaggaagtgtctttgcacaaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaacacagttttagcc |
296 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4969065 |
ctcatctcaggaagtgtctttgcacaaggcattccaccaactagcttctgttcattgtgagttgaaaagatcagccatgaacctgaacacagttttagct |
4968966 |
T |
|
| Q |
297 |
tcaatggggtctgacatgaagcagaaatacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgat |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968965 |
tcaatggggtctgacatgaagcagaaatacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgat |
4968866 |
T |
|
| Q |
397 |
acaagtttagctatgtggagtggtgcttcaatgacatgtatggtgaccaacctacattttttactgatctgattgttgtgatccatactcagctgttcaa |
496 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
4968865 |
acaagtttagttatgtggagtggtgcttcaatgacatgtatggtgaccaacctacattttttactgatctgattgctgtgatccatactcagctattcaa |
4968766 |
T |
|
| Q |
497 |
actgttcaattggtacaaggatgcctatgaccaacatcataattctggtcatccatctgcaactccatccgagtctagttatgttagcgtgaatgtgatc |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4968765 |
actgttcaattggtacaaggatgcctatgaccagcaacataattctggtcatccgtctgcaagtccatccgagtctagttatgttagcgagaatgtgatc |
4968666 |
T |
|
| Q |
597 |
ctagctgatgt-ccatctcatt |
617 |
Q |
| |
|
| |||||| || |||||||||| |
|
|
| T |
4968665 |
ccagctgaagtcccatctcatt |
4968644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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