View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_48 (Length: 587)
Name: NF0154_2D_low_48
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_48 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 326 - 587
Target Start/End: Complemental strand, 39814157 - 39813896
Alignment:
| Q |
326 |
gaattaataattagatttgaatatcactgcatacatgtgtaggttccatgagaatggtccaggctgtggttcctcacatggcaactaggaaacagggaaa |
425 |
Q |
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| T |
39814157 |
gaattaataatttgatttgaatatcactgcatacatgtgtaggttccatgagaatggtccaggctgtggttcctcacatggcaactaggaaacagggaaa |
39814058 |
T |
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| Q |
426 |
gatcgttaacgttggaagtgttactgcgttagcctctggaccttggggcggtacttatagtgcttctaaagctgctcttcatgctttgacagatacattg |
525 |
Q |
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| T |
39814057 |
gattgttaacgttggaagtgttactgcgttagcctctggaccttggggcggtacttatagtgcttctaaagctgctcttcatgctttgacagatacattg |
39813958 |
T |
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| Q |
526 |
aggttttcttttcctatcttcaaacgcttgttttgatataaattgttgctttggttttgtac |
587 |
Q |
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| T |
39813957 |
aggttttcttttcctatcttcaaacgcttgttttgatataaattgttgctttggttttgtac |
39813896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 39814462 - 39814224
Alignment:
| Q |
14 |
ggttttagaaacgtactagtgttcagtgttccacaccctcacgacagtgacattatgttgaatgataggatttttatgttagactttgaattttgagtgt |
113 |
Q |
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| T |
39814462 |
ggttttagaaacgtactagtgttcagtgttccacaccctcacgacactgacattatgttgaatgataagatttttatgttagactttgaattttgtgtgt |
39814363 |
T |
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| Q |
114 |
taagtgcatttatgcttgtatggtccaaaacaaaagaaacttcaaggtcattttgtactacttcagaacatgaatatgtcgctgtctgtctaattatagg |
213 |
Q |
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| T |
39814362 |
taagtgcatttatgtttgtatggtccaaaacaaaagaaacttcaaggtcattttgtactacttcagaacatgaatatgtcgctgtctgtctaat--tagg |
39814265 |
T |
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| Q |
214 |
ttagtagtacactagtaccaggtacaattgagtgtacacaa |
254 |
Q |
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| T |
39814264 |
ttagtagtacactagtaccaggtacaattgagtgtacacaa |
39814224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 351 - 539
Target Start/End: Complemental strand, 39817566 - 39817378
Alignment:
| Q |
351 |
actgcatacatgtgtaggttccatgagaatggtccaggctgtggttcctcacatggcaactaggaaacagggaaagatcgttaacgttggaagtgttact |
450 |
Q |
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| T |
39817566 |
actgcatacatgtgcaggttccatgagaatggtccaggctgtagttccccacatggcaactaggaaacggggaaagattgttaacattggaagtgttact |
39817467 |
T |
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| Q |
451 |
gcgttagcctctggaccttggggcggtacttatagtgcttctaaagctgctcttcatgctttgacagatacattgaggttttcttttcc |
539 |
Q |
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| T |
39817466 |
gggttggtatctggaccttggaatggtgcttactgtgcttctaaagctgctcttcatgctttgacagatacattaaggtttttttttcc |
39817378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 39817774 - 39817669
Alignment:
| Q |
92 |
ttagactttgaattttgagtgttaagtgcatttatgcttgtatggtccaaaacaaaagaaacttcaaggtcattttgtactacttcagaacatgaatatg |
191 |
Q |
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| T |
39817774 |
ttagactttgtgttttgtgtgttcagtgcatttgtgttggtatggtccaaaacaaaagaaacttcaatgtcattttgtacta---cagaacatgaatttg |
39817678 |
T |
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| Q |
192 |
tcgctgtct |
200 |
Q |
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| T |
39817677 |
tcgttgtct |
39817669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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