View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_50 (Length: 582)
Name: NF0154_2D_low_50
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 3 - 343
Target Start/End: Complemental strand, 40552716 - 40552376
Alignment:
| Q |
3 |
atgtcgggtttgtctaatgttcatttagcaactgaagatgaacatcagctgaatagtatatgcggtctccctgctaatcattctgagcaatcttctgtgg |
102 |
Q |
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| T |
40552716 |
atgtcgggtttgtctaatgttcatttagcaactgaagatgaacatcagctgaatagtatatgcggtctccccgctaatcattctgagcaatcttctgtgg |
40552617 |
T |
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| Q |
103 |
ttccaaataaagatgttgggcaatcacacttaaattcaaatcttgattcgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttc |
202 |
Q |
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| T |
40552616 |
ttccaaataaagatgttgggcaatcacacttaaattcaaatcttgatttgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttc |
40552517 |
T |
|
| Q |
203 |
aactcctttggcgatgaatagtcatcctatccaatctataaccccttcaccttccagaagacttccacatttgtcccatgatattgaattcaaaagaata |
302 |
Q |
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| T |
40552516 |
aattcctttggcgatgaaaagtcatcctatccaatctaaaaccccttcaccttccagaagacttccacatttgtcccatgatattgaattcaaaagaata |
40552417 |
T |
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| Q |
303 |
caaaaaataatagagaaaacatcgaaaaacaatgaagacat |
343 |
Q |
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| T |
40552416 |
caaaaaataatagagaaaacatcgaaaaacaatgaagacat |
40552376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 343 - 564
Target Start/End: Complemental strand, 40552332 - 40552111
Alignment:
| Q |
343 |
tattctaggtttctatcttttctgattactaaaatattattctggttggagcagaaattgcagttgaaatctgattttgaaaaggaattagcggagcttc |
442 |
Q |
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| T |
40552332 |
tattctaggtttctatcttttctgattactaaaatattattctggttggagcagaaattgcagttgaaatctgattttgaaaaggaattagcggagcttc |
40552233 |
T |
|
| Q |
443 |
ggagaaaatatgatgtcaaacttcaggagattgaagttgattacagaagctaaatttcatttcagctcctttccaactatatttcgtgttggtttattta |
542 |
Q |
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| T |
40552232 |
ggagaaaatatgatgtcaaacttcaggagattgaagttgattacagaagctaaatttcatttcagctcctttccaactagatttcgtgttggtttattta |
40552133 |
T |
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| Q |
543 |
tttttccttgccgttgtgtttt |
564 |
Q |
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| T |
40552132 |
tttttccttgccgttgtgtttt |
40552111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 343 - 482
Target Start/End: Complemental strand, 40570386 - 40570247
Alignment:
| Q |
343 |
tattctaggtttctatcttttctgattactaaaatattattctggttggagcagaaattgcagttgaaatctgattttgaaaaggaattagcggagcttc |
442 |
Q |
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| T |
40570386 |
tattctaggtttctatcttttctgattactaaaatattattcttgttggagcagaaattgcggttgaaatctgattttgaaaaggaattggcagagctcc |
40570287 |
T |
|
| Q |
443 |
ggagaaaatatgatgtcaaacttcaggagattgaagttga |
482 |
Q |
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| T |
40570286 |
gaagaaagtatgatgttaaatttcaggagattgaagttga |
40570247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 142 - 342
Target Start/End: Complemental strand, 40570641 - 40570432
Alignment:
| Q |
142 |
atcttgattcgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttcaactcctttggcgatgaatagtcatcctatccaatctat |
241 |
Q |
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||||||||| |||||||||||| |||||||||||||||| || | || ||||||||| |||| |||||||| |||||||| |||||| || ||||||| |
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| T |
40570641 |
atcttgatttgcttacagccagtagagtaagagcacagtgtggctacagaagaaatttgtcaaatcctttggagatgaataatcatccaattcaatctac |
40570542 |
T |
|
| Q |
242 |
aaccccttcaccttccagaagacttccacatttgtcccatgat---------attgaattcaaaagaatacaaaaaataatagagaaaacatcgaaaaac |
332 |
Q |
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| |||||||| |||||||||| |||| |||||||||| ||||| |||||||| |||||||||||||| |||||||| || | ||||||||| |
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| T |
40570541 |
acccccttcatcttccagaaggcttcaacatttgtcctatgatccgctgaacattgaatttgaaagaatacaaaaagtaatagagcaatcttcgaaaaac |
40570442 |
T |
|
| Q |
333 |
aatgaagaca |
342 |
Q |
| |
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||||||||| |
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| T |
40570441 |
catgaagaca |
40570432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 40570830 - 40570702
Alignment:
| Q |
4 |
tgtcgggtttgtctaatgttcatttagcaactgaagatgaacatcagctgaatagtatatgcggtctccctgctaatcattctgagcaatcttctgtggt |
103 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||| || |||||||||||| | |||||||||| |
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| T |
40570830 |
tgtcgggtttttctactgttcatttagcaactgaagatgaacatcagctgaacagcgtacatagtctccccactcatcattctgagccaacttctgtggt |
40570731 |
T |
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| Q |
104 |
tccaaataaagatgttgggcaatcacact |
132 |
Q |
| |
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|||||| ||||||| |||||| ||||||| |
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| T |
40570730 |
tccaaacaaagatgctgggcagtcacact |
40570702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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