View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_52 (Length: 579)
Name: NF0154_2D_low_52
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 23 - 564
Target Start/End: Complemental strand, 41765923 - 41765382
Alignment:
| Q |
23 |
tcctaacctgtcctactcttctctgcattcttatatactgtcttggagatatactcgttagaattttcttcaaattaggtatatcattgacagagacttc |
122 |
Q |
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| T |
41765923 |
tcctaacctgtcctactcttctctgcattcttatatactgtcttggagatatattcgatagaattttcttcaaattaggtatatcattgacagagacttc |
41765824 |
T |
|
| Q |
123 |
aacagaaaacgatttccaattcaaaacatcactgaatggaggaacataatgatctgaaatcagcactggaacacaacctgtgtatattgcttccaccact |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41765823 |
aacagaaaacgatttccaattcaaaacatcactgaatggaggaacataatgatctgaaatcagcactggaacacaacctgtgtatattgcttccaccact |
41765724 |
T |
|
| Q |
223 |
cttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacacaccctttggaaggtacttgtgaactt |
322 |
Q |
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| T |
41765723 |
cttggacttgcaacctcccacccactaggacaaagacaaaacttgctttttctcaacatagcatagtaagacacaccctttggaaggtacttgtgaactt |
41765624 |
T |
|
| Q |
323 |
gaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaagaaagccaaaattgatctcttagatgg |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41765623 |
gaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaagaaagccaaaattgatctcttagatgg |
41765524 |
T |
|
| Q |
423 |
tgatggtccaccaagaagatcatcaattatgccggttcgaacattgatttctggaatagatacatcttttactggcttgaattcctctgaggtgttggca |
522 |
Q |
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| T |
41765523 |
tgatggtccgccaagaagatcatcaattatgccggttcgaacattgatttctggaatagatacatcttttactggcttgaatccctctgaggtgttggca |
41765424 |
T |
|
| Q |
523 |
ttgcaaaacgcacgaatcgaattcttgtacaagtttggaact |
564 |
Q |
| |
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| T |
41765423 |
ttgcaaaacgcacgaatcgaattcttgtacaagtttggaact |
41765382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 21 - 564
Target Start/End: Complemental strand, 41757842 - 41757299
Alignment:
| Q |
21 |
tctcctaacctgtcctactcttctctgcattcttatatactgtcttggagatatactcgttagaattttcttcaaattaggtatatcattgacagagact |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757842 |
tctcctaacctgtcctactcttctctgcattcttatatactgtcttggagatatactcgttagaattttcttcaaattaggtatatcattgacagagact |
41757743 |
T |
|
| Q |
121 |
tcaacagaaaacgatttccaattcaaaacatcactgaatggaggaacataatgatctgaaatcagcactggaacacaacctgtgtatattgcttccacca |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757742 |
tcaacagaaaacgatttccaattcaaaacatcactgaatggaggaacataatgatctgaaatcagcactggaacacaacctgtgtatattgcttccacca |
41757643 |
T |
|
| Q |
221 |
ctcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacacaccctttggaaggtacttgtgaac |
320 |
Q |
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| T |
41757642 |
ctcttggacttgcaacctcgtacccactaggacaaagacagaacttgctttttcttaacatatcatagtaagacacaccctttggaaggtacttgtgaac |
41757543 |
T |
|
| Q |
321 |
ttgaatatcttcatctttgtgttcccaatgttcaagtagaacattcctaatatccccatgaagcccaccagcgaagaaagccaaaattgatctcttagat |
420 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||| ||||| ||||||| |
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| T |
41757542 |
ttgaagatcttcatctttgtgttcccaatgttcaagtagaacaggcctaacgggcccatgaaccccaccggcgaagaaagccaaaactgatcgcttagat |
41757443 |
T |
|
| Q |
421 |
ggtgatggtccaccaagaagatcatcaattatgccggttcgaacattgatttctggaatagatacatcttttactggcttgaattcctctgaggtgttgg |
520 |
Q |
| |
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|||||||| || |||| || | ||| ||| | |||||| ||| |||| ||||||||||||||||||| ||| | ||||||||| ||||||| ||||| | |
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| T |
41757442 |
ggtgatggcccgccaacaataccatgtattgtaccggtttgaagattggtttctggaatagatacatcctttgcaggcttgaatccctctgatgtgttcg |
41757343 |
T |
|
| Q |
521 |
cattgcaaaacgcacgaatcgaattcttgtacaagtttggaact |
564 |
Q |
| |
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||||||||| ||| || || ||||| |||||||||||||||||| |
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| T |
41757342 |
cattgcaaagcgctcggattgaatttttgtacaagtttggaact |
41757299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 37 - 319
Target Start/End: Original strand, 26972953 - 26973235
Alignment:
| Q |
37 |
actcttctctgcattcttatatactgtcttggagatatactcgttagaattttcttcaaattaggtatatcattgacagagacttcaacagaaaacgatt |
136 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| || ||| | | ||| | |||||| || || ||||| | || || | ||||||||||| || | |
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|
| T |
26972953 |
actcttctctgcatccttatatactgtgttggagaaattctcatcaaaatatccttcaatttgggaatatcttcaaccgaaatctcaacagaaaaagact |
26973052 |
T |
|
| Q |
137 |
tccaattcaaaacatcactgaatggaggaacataatgatctgaaatcagcactggaacacaacctgtgtatattgcttccaccactcttggacttgcaac |
236 |
Q |
| |
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||||||| || |||||||| |||||||||||||||||||||||||| || || |||||||| |||||||| ||||| || || | |||||||| || || |
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| T |
26973053 |
tccaatttaagacatcactaaatggaggaacataatgatctgaaataagtacaggaacacagcctgtgtaaattgcctcaactatccttggactagccac |
26973152 |
T |
|
| Q |
237 |
ctcgtacccactaggacaaagacagaacttgctttttctcaacatatcatagtaagacacaccctttggaaggtacttgtgaa |
319 |
Q |
| |
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||| || ||||||||||| |||||||||||||| ||||||| ||| ||||||||||| |||||||||||||| ||||| |||| |
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|
| T |
26973153 |
ctcataaccactaggacagagacagaacttgctctttctcagcatttcatagtaagaaacaccctttggaagatacttttgaa |
26973235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 47725770 - 47725854
Alignment:
| Q |
186 |
cactggaacacaacctgtgtatattgcttccaccactcttggacttgcaacctcgtacccactaggacaaagacagaacttgctt |
270 |
Q |
| |
|
|||||| ||||| |||| || |||||||||||||||||||||||||| || || | |||||||| || | ||| ||||||||| |
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| T |
47725770 |
cactgggacacatcctgcataaattgcttccaccactcttggacttgccacttcatgtccactagggcacaaacaaaacttgctt |
47725854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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