View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_54 (Length: 545)
Name: NF0154_2D_low_54
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 25708221 - 25707679
Alignment:
| Q |
1 |
gagtccttcatattgaagatagtactagtcaaatagaaaggtctaagtgggttttggattctcctaatccaccacctttatggaagaagctattttcttc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25708221 |
gagtccttcatattgaagatagtactagtcaaatagaaaggtctaagtgggttttggattctcctaatccaccacctttatggaagaagctattttcttc |
25708122 |
T |
|
| Q |
101 |
attgaaagagacccttttgcctcatggaaacaaattatgtttctcatccaagaacaaaagttttcttgcacttgcttactcattcttgcagagtttgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25708121 |
attgaaagagacccttttgcctcatggaaacaaattatgtttctcatccaagaacaaaagttttcttgcacttgcttactcattcttgcagagtttgttt |
25708022 |
T |
|
| Q |
201 |
ccaatccttgtttggttaaaagattacactatctctaaatttaaagatgatcttttagctggtttaactcttgcaagtctttgcatacctcaggtatgta |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25708021 |
ccaatccttgtttggttaaaagattacactatctctaaatttaaagatgatcttttagctggtttaactcttgcaagtctttgcatacctcaggtatgta |
25707922 |
T |
|
| Q |
301 |
ctaagaaacattatttttgtcttgcatgtgaaaaagcaacatttatattcatattattcttcaatttttcatttgaatgttgcagagtataggttatgca |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25707921 |
ctaagaaacattatttttgtcttgcatgtgaaaaagcaacatttatattcatattattcttcaatttttcatttgaatgttgcagagtataggttatgca |
25707822 |
T |
|
| Q |
401 |
agtttggcaaaagttgatcctcaatatggcttgtgtaagtgtctgcatctgcgtctgttattacttactcgctctctctgtaacaaaatataagcnnnnn |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25707821 |
agtttggcaaaagttgatcctcaatatggcttgtgtaagtgtttgcatctgcgtctgttattacttactcgctctctctgtaacaaaatataagcaaaat |
25707722 |
T |
|
| Q |
501 |
nnttctaaaaagtcaaatgtatctggtctgaaattcagaccag |
543 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| |
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| T |
25707721 |
aattctaaaaagtcaaatgtatctggtctgaatttcagaccag |
25707679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 437
Target Start/End: Complemental strand, 33270975 - 33270914
Alignment:
| Q |
376 |
aatgttgcagagtataggttatgcaagtttggcaaaagttgatcctcaatatggcttgtgta |
437 |
Q |
| |
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||||||||||||||| |||||||| | ||| |||||| ||||||||||||||||||| |||| |
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| T |
33270975 |
aatgttgcagagtattggttatgctaatttagcaaaacttgatcctcaatatggcttatgta |
33270914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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