View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_57 (Length: 539)
Name: NF0154_2D_low_57
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_57 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0328 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 338 - 539
Target Start/End: Complemental strand, 11681633 - 11681430
Alignment:
| Q |
338 |
taaaaggtgtatcaaataatatggttattcaaaatatcattgctcaagtttattaacgctcaaaaacccgcacaaggcagtacatggaatggccgaatta |
437 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11681633 |
taaaaagtgtatcaaataatatggttattcaaaataccattgctcaagtttattaacgctcaaaaacccgcacaaggcagtacatagaatggccgaatta |
11681534 |
T |
|
| Q |
438 |
aatagtacaagaaggccaaaacaagttaaaaagactcggcaacaacagcggtaaaactggtgcgaagaaac--ggaccagcacaccaaaacagaacagca |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
11681533 |
aatagtacaagaaggccaaaacaagttaaaaagactcggcaacaacagcggtaaaactggtgcgaagaaacaggggccagcacaccaaaacagaacagca |
11681434 |
T |
|
| Q |
536 |
agcc |
539 |
Q |
| |
|
|||| |
|
|
| T |
11681433 |
agcc |
11681430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 11681811 - 11681650
Alignment:
| Q |
24 |
gctttcaaatatcacaattgtccagctcttagccaccaccaataaggtgttatctgcaaattgtagatgcgaaacattgaccgaacattataagcagtga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
11681811 |
gctttcaaatatcacaattgtccagctcttagcccccaccaataaggtgtcatctgcaaattgtagatgcgaaacattgacctaacattataagcggtga |
11681712 |
T |
|
| Q |
124 |
acaattcagcttctaccataacattcattaatctcattgtttttgaccaattaaaagagaaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11681711 |
acaattcagcttctaccataacattcattaatctcattgtttttgaccaattaaaagagaaa |
11681650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 232 - 336
Target Start/End: Complemental strand, 408668 - 408564
Alignment:
| Q |
232 |
tacccacgttttggcaaaagctataattttaagcttcccaaaaatcatggtagattagtattgggaagtggtatttatgctccgaccactataccaaaca |
331 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
408668 |
tacccacgttttggcaaaagctacaattgtaagcttcccaaaaatcatggtagattagcattgggaagtggtatttatgctcccaccactataccaaaca |
408569 |
T |
|
| Q |
332 |
ggcaa |
336 |
Q |
| |
|
||||| |
|
|
| T |
408568 |
ggcaa |
408564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 221 - 331
Target Start/End: Original strand, 34784992 - 34785102
Alignment:
| Q |
221 |
gatcagatctgtacccacgttttggcaaaagctataattttaagcttcccaaaaatcatggtagattagtattgggaagtggtatttatgctccgaccac |
320 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
34784992 |
gatcagacctgtacccacgttttgacaaaagctacaattttaagcttctcaaaaatcacggtagattagcattgggaagtggtatttatgctcccaccat |
34785091 |
T |
|
| Q |
321 |
tataccaaaca |
331 |
Q |
| |
|
||||||||||| |
|
|
| T |
34785092 |
tataccaaaca |
34785102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 221 - 340
Target Start/End: Complemental strand, 23667666 - 23667547
Alignment:
| Q |
221 |
gatcagatctgtacccacgttttggcaaaagctataattttaagcttcccaaaaatcatggtagattagtattgggaagtggtatttatgctccgaccac |
320 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
23667666 |
gatcagacctgtatccacgttttggcaaaagctacacttttaagcttcccaaaaatcacggtaaattagcattaggaagtggtatttatgctcccaccat |
23667567 |
T |
|
| Q |
321 |
tataccaaacaggcaattaa |
340 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
23667566 |
tataccaaacaggcacttaa |
23667547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 221 - 335
Target Start/End: Complemental strand, 7587 - 7473
Alignment:
| Q |
221 |
gatcagatctgtacccacgttttggcaaaagctataattttaagcttcccaaaaatcatggtagattagtattgggaagtggtatttatgctccgaccac |
320 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||||||||||| ||||||||| |||| ||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
7587 |
gatcagacttgtacccacgttttggtaaaagctacaattttaagcttctcaaaaatcacggtaaattagcattggaaagtggtatttatgctcccgccac |
7488 |
T |
|
| Q |
321 |
tataccaaacaggca |
335 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7487 |
tataccaaacaggca |
7473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 21732909 - 21733023
Alignment:
| Q |
221 |
gatcagatctgtacccacgttttggcaaaagctataattttaagcttcccaaaaatcatggtagattagtattgggaagtggtatttatgctccgaccac |
320 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| ||||||||| ||| ||||||| | ||| ||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
21732909 |
gatcagaccagtacccacgttttggcaaaagctacaattttaagtttctcaaaaattacggtttattagcattgggaagtggtatttatactcccaccac |
21733008 |
T |
|
| Q |
321 |
tataccaaacaggca |
335 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
21733009 |
tataccaaacaggca |
21733023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 51268840 - 51268741
Alignment:
| Q |
236 |
cacgttttggcaaaagctataattttaagcttcccaaaaatcatggtagattagtattgggaagtggtatttatgctccgaccactataccaaacaggca |
335 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||||| ||||| |||| |||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
51268840 |
cacgttttggcaaaagctacaattgtaagcttctcaaaaatcacggtaggttagcattgagaagtggtatttatgctcccaccacaataccaaacaggca |
51268741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 2094438 - 2094520
Alignment:
| Q |
221 |
gatcagatctgtacccacgttttggcaaaagctataattttaagcttcccaaaaatcatggtagattagtattgggaagtggta |
304 |
Q |
| |
|
||||||| |||||||||| ||| | |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2094438 |
gatcagacctgtacccacattt-gctaaaagctacaattttaagcttctcaaaaatcacggtagattagtattgggaagtggta |
2094520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1678 times since January 2019
Visitors: 2195