View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_6 (Length: 1087)
Name: NF0154_2D_low_6
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_6 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 976; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 976; E-Value: 0
Query Start/End: Original strand, 108 - 1087
Target Start/End: Complemental strand, 16843930 - 16842951
Alignment:
| Q |
108 |
agctttatgagacaattatcttcggacagctgcagtaaaatgtagcgagactgcttgaatcagtattatgctcatgtagtgagtgagaaaacacagcatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843930 |
agctttatgagacaattatcttcggacagctgcagtaaaatgtagcgagactgcttgaatcagtattatgctcatgtagtgagtgagaaaacacagcatc |
16843831 |
T |
|
| Q |
208 |
atacttttacagcgtaactaatttcaaatatcttatacagccatttcttcaaaaaaccaaggcctcgagtcctcaactcaaattaagaatttacgatcac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843830 |
atacttttacagcgtaactaatttcaaatatcttatacagccatttcttcaaaaaaccaaggcctcgagtcctcaactcaaattaagaatttacgatcac |
16843731 |
T |
|
| Q |
308 |
caaattataagttctacagtgacaagtaacagatctagaaagcaaataaagaaatgaacttcctctgcaacaacacataatatagtgtttattttcttat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843730 |
caaattataagttctacagtgacaagtaacagatctagaaagcaaataaagaaatgaacttcctctgcaacaacacataatatagtgtttattttcttat |
16843631 |
T |
|
| Q |
408 |
atctaagaatatacagaaatatttcacaaaggaagcaaacggtcagtgactataatcaaggaggactttagggtcaagctatttttcaaaataaacaggg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843630 |
atctaagaatatacagaaatatttcacaaaggaagcaaacggtcagtgactataatcaaggaggactttagggtcaagctatttttcaaaataaacaggg |
16843531 |
T |
|
| Q |
508 |
ttagaaaatctaagaccatttacaaaatgtcataggtttatgatattcataattttatctgctttgtccatagtgaccatttaacagcttctaagaactt |
607 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843530 |
ttagaaaatccaagaccatttacaaaatgtcataggtttatgatattcataattttatctgctttgtccatagtgaccatttaacagcttctaagaactt |
16843431 |
T |
|
| Q |
608 |
atcgtttcgcttcagtgcattgataagattagtgtaggttgtctcgtcaagttctattccattttttctcatttccttgatcaattctacagcctcttca |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843430 |
atcgtttcgcttcagtgcattgataagattagtgtaggttgtctcgtcaagttctattccattttttctcatttccttgatcaattctacagcctcttca |
16843331 |
T |
|
| Q |
708 |
tccactccagcaatcccatatgccttaatcaatgtgttatagctgcaaaaatcaggtcggagtccacattcattcaactccgcgagcacatcagacactt |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843330 |
tccactccagcaatcccatatgccttaatcaatgtgttatagctgcaaaaatcaggtcggagtccacattcattcaactccgcgagcacatcagacactt |
16843231 |
T |
|
| Q |
808 |
cttcgatccaactttgttcactgtagatattgatcacggtgttgtacgtgtagagatcagaagcataatttgattccttcatcattttcagtacagatct |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843230 |
cttcgatccaactttgttcactgtagatattgatcacggtgttgtacgtgtagagatcagaagcataatttgattccttcatcattttcagtacagatct |
16843131 |
T |
|
| Q |
908 |
aaacgcgtccatttggctatcttttccataagcatccagcattgaattgtaggcttcaagggaaactgagaatacatcaaattgcatcttgtgaacagtt |
1007 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843130 |
aaacgcgtccatttggctatcttttccataagcatccagcattgaattgtaggcttcaagggaaactgagaatacatcaaattgcatcttgtgaacagtt |
16843031 |
T |
|
| Q |
1008 |
cttgacatgtcgctgaagtccttccttttcccataagcatctataatagtattgtaggtaatgacatcaaccaagccttg |
1087 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843030 |
cttgacatgtcgctgaagtccttccttttcccataagcatctataatagtattgtaggtaatgacatcaaccaagccttg |
16842951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 31777935 - 31778016
Alignment:
| Q |
21 |
aacctataagtgtatcatatttt-atttctctcatttttatctttactactttaattaatattgatcattttacatggatgt |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31777935 |
aacctataagtgtatcatatttttatttctctcatttttatctttactactttaattaatattgatcattttacatggatgt |
31778016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 681; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 182 - 1087
Target Start/End: Complemental strand, 24211126 - 24210217
Alignment:
| Q |
182 |
tgtagtgagtgagaaaacacagcatcatacttttacagcgtaactaatttcaaatatcttatacagccatttcttcaaaaaaccaaggcctcgagtcctc |
281 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| || ||||| ||||||| || |||||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
24211126 |
tgtagtgaatgagaaaacacaacatcatacttttacagcttatctaatatcaaataactcatacagtcattccttcaaaaaaccaaggtctcgagtcctc |
24211027 |
T |
|
| Q |
282 |
aactcaaattaagaatttacgatcaccaaattataagttctacagtgacaagtaacagatctagaaagcaaataaagaaatgaacttcctctgcaacaac |
381 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
24211026 |
gactcaaattcagaatttacgatcaccaaattataagttctacagtgacaagtaacagatctagagaccaaataaagaaatgaacttcctttgcaacaac |
24210927 |
T |
|
| Q |
382 |
acata----atatagtgtttattttcttatatctaagaatatacagaaatatttcacaaaggaagcaaacggtcagtgactataatcaaggaggacttta |
477 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| || |
|
|
| T |
24210926 |
acatataatatacagtgtttattttcttatttctcagaatatacagaaatatttcacaaaggaagcaaaaggtcagtgactgtaatcaagtaggactcta |
24210827 |
T |
|
| Q |
478 |
gggtcaagctatttttcaaaataaacagggttagaaaatctaagaccatttacaaaatgtcataggtttatgatattcataattttatctgctttgtcca |
577 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24210826 |
gggtcaagctattcttcaaaataaacagggttagaaaatccaagaccgtttacaaaatgccataggtttatgatattcataattttatctgcttcatcca |
24210727 |
T |
|
| Q |
578 |
tagtgaccatttaacagcttctaagaacttatcgtttcgcttcagtgcattgataagattagtgtaggttgtctcgtcaagttctattccattttttctc |
677 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
24210726 |
tagtgaccatttaacagcttctaagaacttatcgtttcgcttcagtgcattgataagattggtgtaggttgtctggtcaggttctattccattttttctc |
24210627 |
T |
|
| Q |
678 |
atttccttgatcaattctacagcctcttcatccactccagcaatcccatatgccttaatcaatgtgttatagctgcaaaaatcaggtcggagtccacatt |
777 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24210626 |
atttccttgatcaattcaacagcctcttcaaccattccagcaattccatatgccttaatcaacgtgttatagctgcacaaatcaggtcggagtccacatt |
24210527 |
T |
|
| Q |
778 |
cattcaactccgcgagcacatcagacacttcttcgatccaactttgttcactgtagatattgatcacggtgttgtacgtgtagagatcagaagcataatt |
877 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
24210526 |
cattcaactccgcgagcacatcggagacttcttcgatccaaccttgttcaccatagatattgatcacaatgttgtacgtgtagagatcagaagcacaatt |
24210427 |
T |
|
| Q |
878 |
tgattccttcatcattttcagtacagatctaaacgcgtccatttggctatcttttccataagcatccagcattgaattgtaggcttcaagggaaactgag |
977 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24210426 |
tgattccttcatcattttcagtacagatctaaacgcgtccatttggctatcttttccgtaagcatccagcattgaattgtaggcttcaagggaaactgag |
24210327 |
T |
|
| Q |
978 |
aatacatcaaattgcatcttgtgaacagttcttgacatgtcgctgaagtccttccttttcccataagcatctataatagtattgtaggtaatgacatcaa |
1077 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
24210326 |
aatccatcaaattgcatcttgcgaacagttcttgacatgtttctgaagtccttctttttcccataagaatctataatagtattgtaggtgatgacatcaa |
24210227 |
T |
|
| Q |
1078 |
ccaagccttg |
1087 |
Q |
| |
|
|||||||||| |
|
|
| T |
24210226 |
ccaagccttg |
24210217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1629 times since January 2019
Visitors: 2194