View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_67 (Length: 497)

Name: NF0154_2D_low_67
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_67
NF0154_2D_low_67
[»] chr7 (2 HSPs)
chr7 (1-479)||(240139-240616)
chr7 (388-427)||(4587679-4587718)
[»] chr6 (3 HSPs)
chr6 (383-426)||(3634199-3634242)
chr6 (381-426)||(17352547-17352592)
chr6 (383-426)||(22259516-22259559)
[»] chr8 (2 HSPs)
chr8 (384-426)||(33053638-33053680)
chr8 (385-414)||(13109637-13109666)
[»] chr2 (4 HSPs)
chr2 (385-426)||(35406132-35406173)
chr2 (388-426)||(20515848-20515886)
chr2 (385-427)||(31000194-31000236)
chr2 (388-426)||(31483239-31483277)
[»] scaffold0211 (1 HSPs)
scaffold0211 (384-426)||(24760-24802)
[»] chr4 (3 HSPs)
chr4 (384-422)||(21823393-21823431)
chr4 (384-426)||(41635687-41635729)
chr4 (384-426)||(42454556-42454598)
[»] scaffold0003 (1 HSPs)
scaffold0003 (388-427)||(89531-89570)
[»] chr3 (2 HSPs)
chr3 (384-427)||(1085483-1085526)
chr3 (385-414)||(17132472-17132501)
[»] chr5 (2 HSPs)
chr5 (388-426)||(24308816-24308854)
chr5 (388-426)||(24364471-24364509)
[»] chr1 (1 HSPs)
chr1 (385-426)||(24115511-24115552)


Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 240139 - 240616
Alignment:
Q  1 tgaggaaaaggataaaagtgaggaacctatcggttgtggagtttaaatgnnnnnnnnnnagttaattatgttgttgtttcgtgagcactactatggccac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  240139 tgaggaaaaggataaaagtgaggaacctatcggttgtggagtttaaatgttttttttt-agttaattatgttgttgtttcgtgagcactactatggccac 240237  T
Q  101 gatatcttctactttaatttcatttagttgtagttacatgcatgcatgtgctagtgattatgtctttaagctttcaccatttatcaatcttgcattgtaa 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  240238 gatatcttctactttaatttcatttagttgtagctacatgcatgcatgtgctagtgattatgtctttaagctttcaccatttatcaatcttgcattgtaa 240337  T
Q  201 atcttgccatccatgaattaatgatgtttcaccctttcttttcaattcataacataaattaatagaatagttagattttcctttttatgttacttaggct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  240338 atcttgccatccatgaattaatgatgtttcaccctttcttttcaattcataacataaattaatagaatagttagattttcctttttatgttacttaggct 240437  T
Q  301 gatnnnnnnnnctaattaatgatacacaccatcttcctcactttcttaatgcctcagagtgatttctcttgaatctaccaaatatttaaaactagtctta 400  Q
    |||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  240438 gataaaaaaaactaattaatgatacacaccatcttcctcactttcttaatgcctcagagtgatttctcttgaatttaccaaatatttaaaactagtctta 240537  T
Q  401 ttgtttaccaaaaataccggtaaacaccaagcttcctttgagatagtttcatcctcaaccttctcaaacatagaattac 479  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  240538 ttgtttaccaaaaataccggtaaacacgaagcttcctttaagatagtttcatcctcaaccttctcaaacatagaattac 240616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Complemental strand, 4587718 - 4587679
Alignment:
Q  388 aaaactagtcttattgtttaccaaaaataccggtaaacac 427  Q
    |||||||||| |||||||||||||||| ||||||||||||    
T  4587718 aaaactagtcatattgtttaccaaaaacaccggtaaacac 4587679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 426
Target Start/End: Complemental strand, 3634242 - 3634199
Alignment:
Q  383 tatttaaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  3634242 tatttaaaactagtcttattgtttaccaaaaacaccggtaaaca 3634199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 17352592 - 17352547
Alignment:
Q  381 aatatttaaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||    
T  17352592 aataattaaaactagtcctattgtttaccaaaaatacaggtaaaca 17352547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 426
Target Start/End: Original strand, 22259516 - 22259559
Alignment:
Q  383 tatttaaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    |||||||||||||||||||||||||| ||||| | |||||||||    
T  22259516 tatttaaaactagtcttattgtttacaaaaaacagcggtaaaca 22259559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 33053680 - 33053638
Alignment:
Q  384 atttaaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  33053680 atttaaaactagtcttattgtttaccaaaaacaccggtaaaca 33053638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Complemental strand, 13109666 - 13109637
Alignment:
Q  385 tttaaaactagtcttattgtttaccaaaaa 414  Q
    ||||||||||||||||||||||||||||||    
T  13109666 tttaaaactagtcttattgtttaccaaaaa 13109637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 426
Target Start/End: Original strand, 35406132 - 35406173
Alignment:
Q  385 tttaaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  35406132 tttaaaactagtcttattgtttaccaaaaaaaccggtaaaca 35406173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 426
Target Start/End: Original strand, 20515848 - 20515886
Alignment:
Q  388 aaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  20515848 aaaactagtcttattgtttaccaaaaacaccggtaaaca 20515886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 31000194 - 31000236
Alignment:
Q  385 tttaaaactagtcttattgtttaccaaaaataccggtaaacac 427  Q
    |||||||||| ||||||||||||||||||| || |||||||||    
T  31000194 tttaaaactaatcttattgtttaccaaaaacacaggtaaacac 31000236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 31483277 - 31483239
Alignment:
Q  388 aaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  31483277 aaaactagtcttcttgtttaccaaaaataccggcaaaca 31483239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 24802 - 24760
Alignment:
Q  384 atttaaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  24802 atttaaaactagtcttattgtttatcaaaaatatcggtaaaca 24760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 21823431 - 21823393
Alignment:
Q  384 atttaaaactagtcttattgtttaccaaaaataccggta 422  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  21823431 atttaaaactagtcttattgtttaccaaaaacaccggta 21823393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 426
Target Start/End: Original strand, 41635687 - 41635729
Alignment:
Q  384 atttaaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    |||||||||||||||||| |||| ||||||| |||||||||||    
T  41635687 atttaaaactagtcttatggttttccaaaaacaccggtaaaca 41635729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 42454598 - 42454556
Alignment:
Q  384 atttaaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||    
T  42454598 atttaaaactaatcttattgtttaccacaaacaccggtaaaca 42454556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Complemental strand, 89570 - 89531
Alignment:
Q  388 aaaactagtcttattgtttaccaaaaataccggtaaacac 427  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  89570 aaaactagtcttattgtttactaaaaacaccggtaaacac 89531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 1085526 - 1085483
Alignment:
Q  384 atttaaaactagtcttattgtttaccaaaaataccggtaaacac 427  Q
    |||||||| |||| ||||||||||||||||| ||||||||||||    
T  1085526 atttaaaattagttttattgtttaccaaaaacaccggtaaacac 1085483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Complemental strand, 17132501 - 17132472
Alignment:
Q  385 tttaaaactagtcttattgtttaccaaaaa 414  Q
    ||||||||||||||||||||||||||||||    
T  17132501 tttaaaactagtcttattgtttaccaaaaa 17132472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 24308854 - 24308816
Alignment:
Q  388 aaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  24308854 aaaactagttttcttgtttaccaaaaataccggtaaaca 24308816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 426
Target Start/End: Original strand, 24364471 - 24364509
Alignment:
Q  388 aaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  24364471 aaaactagttttcttgtttaccaaaaataccggtaaaca 24364509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 426
Target Start/End: Original strand, 24115511 - 24115552
Alignment:
Q  385 tttaaaactagtcttattgtttaccaaaaataccggtaaaca 426  Q
    |||||||||||| ||||||||||||||||| |||| ||||||    
T  24115511 tttaaaactagttttattgtttaccaaaaacaccgataaaca 24115552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1621 times since January 2019
Visitors: 2194