View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_71 (Length: 491)
Name: NF0154_2D_low_71
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 24056464 - 24056785
Alignment:
| Q |
17 |
taatattattcaactcatctagagacacacttagtttgttatcaaatttattctcgtcgagcaagtgcaagttgcaccaaaatactcgcagcgaaataaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24056464 |
taatattattcaactcatctagagacacacttagtttgttatcaaatttattctcgtcgagcaagtgcaagttgcaccaaaatactcgcagcgaaataaa |
24056563 |
T |
|
| Q |
117 |
gacaattaaaaaggcactgaaataaccggaaacctataaacccaagagcctgagcggccaaagaactcctagccgtggaaaccgcaaaagacacaccagt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24056564 |
gacaattaaaaaggcactgaaataaccggaaacctataaacccaagagcctgagcggccaaagaactcctagccgtggaaaccgcaaaagatacaccagt |
24056663 |
T |
|
| Q |
217 |
agcagaggcacaatactgatgctgttatatatctcctgctaaaaccactcacaacagaaaacacttcctaaagaaaagcgcagacagcagcaaatgtaaa |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24056664 |
agcagaggcacaatactgatgctgttatatatctcctgctaaaaccactcacaacagaaaacacttcctaaagaaaagcgcagacagcagcaaatgtaaa |
24056763 |
T |
|
| Q |
317 |
cttggcataccccagcctcagc |
338 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
24056764 |
ctcggcataccccagcctcagc |
24056785 |
T |
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