View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_77 (Length: 475)

Name: NF0154_2D_low_77
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_77
NF0154_2D_low_77
[»] chr7 (9 HSPs)
chr7 (170-258)||(2242838-2242927)
chr7 (396-450)||(669866-669920)
chr7 (343-447)||(2243031-2243136)
chr7 (369-446)||(38786295-38786372)
chr7 (444-475)||(669952-669983)
chr7 (204-258)||(36479283-36479338)
chr7 (13-42)||(47590095-47590124)
chr7 (15-43)||(3224700-3224728)
chr7 (15-43)||(3394253-3394281)
[»] chr3 (3 HSPs)
chr3 (343-451)||(39917694-39917802)
chr3 (13-52)||(50194564-50194603)
chr3 (13-53)||(20988036-20988076)
[»] chr2 (5 HSPs)
chr2 (336-417)||(11841517-11841596)
chr2 (369-446)||(45052717-45052794)
chr2 (206-257)||(37826490-37826541)
chr2 (11-52)||(29574910-29574951)
chr2 (1-44)||(12648192-12648236)
[»] scaffold0075 (1 HSPs)
scaffold0075 (369-446)||(58847-58924)
[»] chr4 (2 HSPs)
chr4 (369-446)||(19148-19225)
chr4 (204-257)||(22212644-22212698)
[»] chr1 (3 HSPs)
chr1 (2-44)||(47132695-47132737)
chr1 (15-44)||(32679382-32679411)
chr1 (11-43)||(14872420-14872452)
[»] scaffold0191 (1 HSPs)
scaffold0191 (369-446)||(13587-13664)
[»] chr5 (1 HSPs)
chr5 (378-445)||(25948715-25948782)
[»] chr6 (1 HSPs)
chr6 (1-53)||(30493303-30493356)
[»] scaffold0007 (1 HSPs)
scaffold0007 (225-258)||(172645-172678)
[»] chr8 (1 HSPs)
chr8 (13-45)||(25191345-25191377)


Alignment Details
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 2242838 - 2242927
Alignment:
Q  170 tgaggttaatcaattgttcaaatgaagttcttaattatgtttatg-ttttaactagaaatcttgttcaatggcaagattgtgttttatcc 258  Q
    ||||||||||| |||||| |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  2242838 tgaggttaatccattgttgaaatgaagttcttaattatgtttatgtttttaattaaaaatcttgttcaatggcaagattgtgttttatcc 2242927  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 396 - 450
Target Start/End: Original strand, 669866 - 669920
Alignment:
Q  396 taaatattttgtaaatgttacttctaaagaaaattattcaacgtcatttatttga 450  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  669866 taaatattttgtaaatgttacttctaaagaaagttattcaaagtcatttatttga 669920  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 447
Target Start/End: Original strand, 2243031 - 2243136
Alignment:
Q  343 tttagggtttaattatccattatcattttttaaatgtgtcatttatgtatatgtaaata-ttttgtaaatgttacttctaaagaaa-attattcaacgtc 440  Q
    |||||||| |||||||||||| | |||||| ||| |||||||||||||||||||||||| |||||| |||||||||| |||| |||  |||||||| |||    
T  2243031 tttagggtctaattatccattgtaattttt-aaaggtgtcatttatgtatatgtaaatatttttgtgaatgttacttttaaacaaagtttattcaaagtc 2243129  T
Q  441 atttatt 447  Q
    |||||||    
T  2243130 atttatt 2243136  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 38786372 - 38786295
Alignment:
Q  369 tttttaaatgtgtcatttatgtatatgtaaatattttgtaaatgttacttctaaagaaaattattcaacgtcatttat 446  Q
    |||||||| ||||| |||||||| ||||||||||||||||||| || ||| |||| ||| |||||||| |||||||||    
T  38786372 tttttaaaggtgtcttttatgtaaatgtaaatattttgtaaatctttcttataaataaagttattcaaagtcatttat 38786295  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 475
Target Start/End: Original strand, 669952 - 669983
Alignment:
Q  444 tatttgagatgaaaaagtttttaaattcttaa 475  Q
    ||||||||||||||||||||||||||||||||    
T  669952 tatttgagatgaaaaagtttttaaattcttaa 669983  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 36479283 - 36479338
Alignment:
Q  204 ttatgtttatgt-tttaactagaaatcttgttcaatggcaagattgtgttttatcc 258  Q
    |||||||||||| ||||  | ||||||||||||||||||||||| |||||||||||    
T  36479283 ttatgtttatgtctttatttggaaatcttgttcaatggcaagatcgtgttttatcc 36479338  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 47590124 - 47590095
Alignment:
Q  13 agaagttggaatttctctcactaaaaaact 42  Q
    ||||||||||||||||||||||||||||||    
T  47590124 agaagttggaatttctctcactaaaaaact 47590095  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 3224700 - 3224728
Alignment:
Q  15 aagttggaatttctctcactaaaaaacta 43  Q
    |||||||||||||||||||||||||||||    
T  3224700 aagttggaatttctctcactaaaaaacta 3224728  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 3394281 - 3394253
Alignment:
Q  15 aagttggaatttctctcactaaaaaacta 43  Q
    |||||||||||||||||||||||||||||    
T  3394281 aagttggaatttctctcactaaaaaacta 3394253  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 451
Target Start/End: Complemental strand, 39917802 - 39917694
Alignment:
Q  343 tttagggtttaattatccattatcattttttaaatgtgtcatttatgtatatgtaaatattttgtaaatgttacttctaaagaaaattattcaacgtcat 442  Q
    |||||||| |||| ||| ||| |  ||||| ||| ||||||||||||||| |||||||||||||||||| || |||||||| ||| |||||||| |||||    
T  39917802 tttagggtctaatcatcaattgtattttttgaaaagtgtcatttatgtatttgtaaatattttgtaaatatttcttctaaataaagttattcaaagtcat 39917703  T
Q  443 ttatttgag 451  Q
    |||||||||    
T  39917702 ttatttgag 39917694  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 50194564 - 50194603
Alignment:
Q  13 agaagttggaatttctctcactaaaaaactagagtcggct 52  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  50194564 agaagttggagtttctctcactaaaaaactagggtcggct 50194603  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 20988036 - 20988076
Alignment:
Q  13 agaagttggaatttctctcactaaaaaactagagtcggcta 53  Q
    |||||||||| ||||||||||||||||||||| | ||||||    
T  20988036 agaagttggagtttctctcactaaaaaactagggccggcta 20988076  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 417
Target Start/End: Original strand, 11841517 - 11841596
Alignment:
Q  336 agtctggtttagggtttaattatccattatcattttttaaatgtgtcatttatgtatatgtaaatattttgtaaatgttact 417  Q
    ||||| ||||| |||||||||||||||| |   |||||||  |||||||||||||||||||||||||||| |||||||||||    
T  11841517 agtctagtttaaggtttaattatccattgta--tttttaatagtgtcatttatgtatatgtaaatattttttaaatgttact 11841596  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 45052794 - 45052717
Alignment:
Q  369 tttttaaatgtgtcatttatgtatatgtaaatattttgtaaatgttacttctaaagaaaattattcaacgtcatttat 446  Q
    |||||||| ||||| |||||||| ||||||||||||||||||| || ||| |||| ||| |||||||| |||||||||    
T  45052794 tttttaaaggtgtcttttatgtaaatgtaaatattttgtaaatctttcttataaataaagttattcaaagtcatttat 45052717  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 37826541 - 37826490
Alignment:
Q  206 atgtttatgttttaactagaaatcttgttcaatggcaagattgtgttttatc 257  Q
    ||||||||||||||| |  |||||||||||||  ||||||||||||||||||    
T  37826541 atgtttatgttttaattgaaaatcttgttcaaatgcaagattgtgttttatc 37826490  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 29574910 - 29574951
Alignment:
Q  11 aaagaagttggaatttctctcactaaaaaactagagtcggct 52  Q
    ||||||||| || ||||||||||||||||||||| |||||||    
T  29574910 aaagaagttagagtttctctcactaaaaaactagggtcggct 29574951  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12648192 - 12648236
Alignment:
Q  1 agaaaacttaaa-agaagttggaatttctctcactaaaaaactag 44  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||    
T  12648192 agaaaacttaaagagaagttggagtttctctcacttaaaaactag 12648236  T

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Target: scaffold0075 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 446
Target Start/End: Original strand, 58847 - 58924
Alignment:
Q  369 tttttaaatgtgtcatttatgtatatgtaaatattttgtaaatgttacttctaaagaaaattattcaacgtcatttat 446  Q
    |||||||| ||||| |||||||| ||||||||||||||||||| || ||| |||| ||| |||||||| |||||||||    
T  58847 tttttaaaggtgtcttttatgtaaatgtaaatattttgtaaatctttcttataaataaagttattcaaagtcatttat 58924  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 446
Target Start/End: Original strand, 19148 - 19225
Alignment:
Q  369 tttttaaatgtgtcatttatgtatatgtaaatattttgtaaatgttacttctaaagaaaattattcaacgtcatttat 446  Q
    |||||||| ||||| |||||||| ||||||||||||||||||| || ||| |||| ||| |||||||| |||||||||    
T  19148 tttttaaaggtgtcttttatgtaaatgtaaatattttgtaaatctttcttataaataaagttattcaaagtcatttat 19225  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 22212698 - 22212644
Alignment:
Q  204 ttatgtttatgt-tttaactagaaatcttgttcaatggcaagattgtgttttatc 257  Q
    |||||||||||| ||||  |||||| |||||||||||||||||| ||||||||||    
T  22212698 ttatgtttatgtctttatttagaaaccttgttcaatggcaagatcgtgttttatc 22212644  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 47132737 - 47132695
Alignment:
Q  2 gaaaacttaaaagaagttggaatttctctcactaaaaaactag 44  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  47132737 gaaaacttaaaagaagttggagtttctctcactaaaaaactag 47132695  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 32679382 - 32679411
Alignment:
Q  15 aagttggaatttctctcactaaaaaactag 44  Q
    ||||||||||||||||||||||||||||||    
T  32679382 aagttggaatttctctcactaaaaaactag 32679411  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 14872452 - 14872420
Alignment:
Q  11 aaagaagttggaatttctctcactaaaaaacta 43  Q
    |||||||||||| ||||||||||||||||||||    
T  14872452 aaagaagttggagtttctctcactaaaaaacta 14872420  T

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Target: scaffold0191 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 446
Target Start/End: Original strand, 13587 - 13664
Alignment:
Q  369 tttttaaatgtgtcatttatgtatatgtaaatattttgtaaatgttacttctaaagaaaattattcaacgtcatttat 446  Q
    |||||||| || || |||||||| ||||||||||||||||||| || ||| |||| ||| |||||||| |||||||||    
T  13587 tttttaaaggtatcttttatgtaaatgtaaatattttgtaaatctttcttataaataaagttattcaaagtcatttat 13664  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 445
Target Start/End: Complemental strand, 25948782 - 25948715
Alignment:
Q  378 gtgtcatttatgtatatgtaaatattttgtaaatgttacttctaaagaaaattattcaacgtcattta 445  Q
    ||||||||||| ||| | ||||||||||||||||||| ||| ||| |||| |||||||| ||||||||    
T  25948782 gtgtcatttatatatttataaatattttgtaaatgtttcttgtaatgaaagttattcaaggtcattta 25948715  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30493356 - 30493303
Alignment:
Q  1 agaaaacttaaa-agaagttggaatttctctcactaaaaaactagagtcggcta 53  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||| ||||||||    
T  30493356 agaaaacttaaagagaggttggagtttctctcactaaaaaactagggtcggcta 30493303  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 172645 - 172678
Alignment:
Q  225 aaatcttgttcaatggcaagattgtgttttatcc 258  Q
    ||||||||||||||||||||||||| ||||||||    
T  172645 aaatcttgttcaatggcaagattgtattttatcc 172678  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 25191345 - 25191377
Alignment:
Q  13 agaagttggaatttctctcactaaaaaactaga 45  Q
    |||||||||| ||||||||||||||||||||||    
T  25191345 agaagttggagtttctctcactaaaaaactaga 25191377  T

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