View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_80 (Length: 472)
Name: NF0154_2D_low_80
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 254 - 449
Target Start/End: Complemental strand, 23029163 - 23028964
Alignment:
| Q |
254 |
tggaggaaaggtttataaatcgatgtatatttgaataatgtgtgtgagaga----aagattttgtgaaggaggggttagagatgatggagtatttaacct |
349 |
Q |
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| T |
23029163 |
tggaggagaggtttataaatcgatgtatatttgaataatgtgtgagagagagagaaagattttgtgaaggaggggttagagatgatggagtatttaacct |
23029064 |
T |
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| Q |
350 |
atggttgctcaatcccaatttccaaatgaatgtcattatcaaagaatgaaattaagaggccccataattcatggacggtgatatcatttttggactttgt |
449 |
Q |
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| T |
23029063 |
atggttgctcaatcccaatttccaaatgaatgtcattatcaaagaatgaaattaagaggccccataattcatggacggtgataacatttttggactttgt |
23028964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 23029394 - 23029232
Alignment:
| Q |
16 |
gaaatgaatgaacaattcttgagaaaaacaaagaattgagaagccaaaatgacaaaaactaacactaaaatcacatgaaatgaatgattacggaacgaaa |
115 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23029394 |
gaaatgaatgaacaattcttgagaaaa-caaagtattgaaaagccaaaatcacaaaaactaaccctaaaatcacatgaaatgaatgattacggaacgaaa |
23029296 |
T |
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| Q |
116 |
attactaattcaaaagaaacggttgcataaataaaactaggagatataacattagaatttaccc |
179 |
Q |
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||||||| |||||||||||||||| ||||||||||||| || |||||||||||||||||||| |
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| T |
23029295 |
attactagatcaaaagaaacggttgtataaataaaactactagctataacattagaatttaccc |
23029232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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