View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_82 (Length: 471)
Name: NF0154_2D_low_82
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_82 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Original strand, 40509937 - 40510373
Alignment:
| Q |
16 |
tggtgttctctcttctacatattaagcttcatattgcaagatttgagtatcaggcattaactggtattctacggtgacattggttcgtggatgaaatttt |
115 |
Q |
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| T |
40509937 |
tggtgttctctcttctacatattaagcttcatattgcaagatttgagtatcaggcattaattggtattctacggtgacattggttcgtggatgaaatttt |
40510036 |
T |
|
| Q |
116 |
cttttgagcatgtatagttgatgcgtcttagtttctgtaatctcgatttttcaatattataaatgcattannnnnnngtagtgctttctgactggcgtaa |
215 |
Q |
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| T |
40510037 |
cttttgagcatgtatagttgatgcgtcttagtttctgtaatctcgatttttcaatattataaatgcattatttttttgtagtgctttctgactggcgtaa |
40510136 |
T |
|
| Q |
216 |
aaggattccagtataagaaaaggacaacctacgagcttcaagcctatgtagatgacggtagccttatttctgaaatcctcattgatcatgatgtgagttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40510137 |
aaggattccagtataagaaaaggacaacctacgagcttcaagcctatgtagatgacggtagccttatttctgaaatcctcattgatcatgatgtgagttt |
40510236 |
T |
|
| Q |
316 |
gttctaaaaaataatcttttaaagcgtgaactttatctttttgcagtactaagatgatcaatgatataatattttaggttgtacagaaaggaattggtta |
415 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40510237 |
gttctaaaaaataatcttttaaagcgtgagctttatctttttgccgtactaagatgatcaatgatataatatattaggttgtacagaaaggaattggtta |
40510336 |
T |
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| Q |
416 |
ttctcccatggaggtcactgcggctctttcttcttct |
452 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
40510337 |
ttctcccatggaggtcactgcggctctttcttcttct |
40510373 |
T |
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