View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_2D_low_91 (Length: 433)
Name: NF0154_2D_low_91
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_91 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 2571591 - 2571176
Alignment:
| Q |
1 |
ttggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatgcagacattattgcggtcgttcaaaatggtctggtcatggaaatgggatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2571591 |
ttggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatgcagacattattgcggtcgttcaaaatggtctggtcatggaaatgggatc |
2571492 |
T |
|
| Q |
101 |
tcacgatagcctcatgcaaaatgacaattctctttacacatcccttgttcgtctccaacaaactagaaatgaccaaagtgatgacactccatctatcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2571491 |
tcacgatagcctcatgcaaaatgacaattctctttacacatcccttgttcgtctccaacaaactagaaatgaccaaagtgatgacactccatctatcatg |
2571392 |
T |
|
| Q |
201 |
aatagagatcacatggaaaacacgagtagtcgtaaacttgtgaggcattctagctctttcaactcaatgacacacggtggtgatgatatcgttaattatc |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2571391 |
aatagagatcacatggaaatcacgagtagtcgtagacttgtgagtcattctagctctttcaactcaatgacacacggtggtgatgatatcgttaattata |
2571292 |
T |
|
| Q |
301 |
acaatgatgttgaagatactgttaataatgatgttgcagttgttgatcacaataataatgatcataagtataataagaaaagggagaatgtcgaggttcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2571291 |
acaatgatgttgaagatactgttaataatgatgttgcagttgttgatcacaataataatgatcataagtataataagaaaagggagaatgtcgaggttcc |
2571192 |
T |
|
| Q |
401 |
atcgtttcgaaggttg |
416 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2571191 |
atcgtttcgaaggttg |
2571176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 2675082 - 2674664
Alignment:
| Q |
1 |
ttggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatgcagacattattgcggtcgttcaaaatggtctggtcatggaaatgggatc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || || ||||||||| | ||||||||| |||||| |
|
|
| T |
2675082 |
ttggacgcaccaccatcatcatcgctcaccgcttatcaaccatccaaaatgcagacatcattgcagttgtccaaaatggtaagatcatggaaacgggatc |
2674983 |
T |
|
| Q |
101 |
tcacgatagcctcatgcaaaatgacaattctctttacacatcccttgttcgtctccaacaaactagaaatgaccaaagtgatgacactccatctatcatg |
200 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
2674982 |
tcacgaaagcctcatgcaaaatgaaaattctctttacacctccctcgttcgtctccaacaaactagaaatgatcaaactgatgacactccatctatcatg |
2674883 |
T |
|
| Q |
201 |
aatagagatcacatggaaaacacgagtagtcgtaaacttgtgaggcattct---agctctttcaactcaatgacacacggtggtgatgatatcgttaatt |
297 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| ||| || || | |||| ||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
2674882 |
aatagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtggtgatgatatccttaatt |
2674783 |
T |
|
| Q |
298 |
atcacaatgatgttgaagatactgttaataatgatgttgcagttgttgatcacaataataatgatcataagtataataagaaaagggagaatgtcgaggt |
397 |
Q |
| |
|
|| |||||| ||||||||||| ||||||||||| ||||| ||||| ||||| ||||||| || || || |||||| ||||| |||||| ||| |||| |
|
|
| T |
2674782 |
ataacaatgttgttgaagatattgttaataatgttgttgtagttgatgatcgcaataatcataatagtataaataatacgaaaaaggagaaggtcaaggt |
2674683 |
T |
|
| Q |
398 |
tccatcgtttcgaaggttg |
416 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
2674682 |
tccttcgtttcgaaggttg |
2674664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 2643233 - 2642827
Alignment:
| Q |
1 |
ttggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatgcagacattattgcggtcgttcaaaatggtctggtcatggaaatgggatc |
100 |
Q |
| |
|
||||||| || ||||||||||||||||| ||| |||| |||||||||||||| ||||| ||||| || |||||||||| | | ||||||| ||| | |
|
|
| T |
2643233 |
ttggacgcacaaccatcatcatcgctcatcgcctatccaccatccaaaatgctgacatcattgcagtgtttcaaaatggcaagataatggaaacaggaac |
2643134 |
T |
|
| Q |
101 |
tcacgatagcctcatgcaaaatgacaattctctttacacatcccttgttcgtctccaacaaactagaaatgaccaaagtgatgacactccatctatcatg |
200 |
Q |
| |
|
||| || |||||| |||| |||| |||||||||||||| || || ||||||||||||||||||||||||||||||| ||| ||| || ||||||||||| |
|
|
| T |
2643133 |
tcatgaaagcctcgcgcaagatgaaaattctctttacacctctctcgttcgtctccaacaaactagaaatgaccaaaatgaggaccctgcatctatcatg |
2643034 |
T |
|
| Q |
201 |
aatagagatcacatggaaaacacgagtagtcgtaaacttgtgaggcattctagctctttcaactcaatgacacacggtggtgatgatatcgttaattatc |
300 |
Q |
| |
|
|| |||| ||||||| |||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
2643033 |
aacagaggtcacatgcaaaacacgagtagtcgtagactcgtgagtcgttctagctctttcaactcaatgacacatggtggtgatgatatcaataatt--- |
2642937 |
T |
|
| Q |
301 |
acaatgatgttgaagatactgttaataatgatgttgcagttgttgatcacaataataatgatcataagtataataagaaaagggagaatgtcgaggttcc |
400 |
Q |
| |
|
|||||| |||| ||||||||||| ||| || || |||||| |||||||||||| |||| |||||||||||| ||||| ||| ||||| | |
|
|
| T |
2642936 |
------ttgttgacgatattgttaataatgtagttatagctgatgatcataataataatgatgataaaaataataagaaaaaagagaaggtcaaggtttc |
2642843 |
T |
|
| Q |
401 |
atcgtttcgaaggttg |
416 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
2642842 |
ttcgtttcaaaggttg |
2642827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 2621427 - 2621693
Alignment:
| Q |
1 |
ttggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatgcagacattattgcggtcgttcaaaatggtctggtcatggaaatgggatc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||| || || ||||| ||||| |
|
|
| T |
2621427 |
ttggacgcaccaccatcatcatcgctcaccgcttatccaccattcaaaatgcagacatcattgcggttgttcaaaatggtatgatcgcggaaacaggatc |
2621526 |
T |
|
| Q |
101 |
tcacgatagcctcatgcaaaatgacaattctctttacacatcccttgttcgtctccaacaaactagaaatgaccaaagtgatgacactccatctatcatg |
200 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| | ||| ||||||| |||||||| |||||||||||| |
|
|
| T |
2621527 |
tcatgaaagcctcatgcaaaatgacaattctctttacgcctcccttgttcgtctccagcaaacaaaaaaggaccaaaccgatgacaccccatctatcatg |
2621626 |
T |
|
| Q |
201 |
aatagagatcacatggaaaacacgagtagtcgtaaacttgtgaggcattctagctctttcaactcaa |
267 |
Q |
| |
|
||||||||||||||| |||||| |||| || ||| ||| ||||| | |||| |||||||||||||| |
|
|
| T |
2621627 |
aatagagatcacatgcaaaacatgagtggttgtagactcgtgagtccatctaactctttcaactcaa |
2621693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 2449217 - 2449520
Alignment:
| Q |
9 |
accaccatcatcatcgctcaccgcttatctaccatccaaaatgcagacattattgcggtcgttcaaaatggtctggtcatggaaatgggatctcacgata |
108 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| || |||||| || ||||| |||||||||||||| | || |||||| ||||||||||| | |
|
|
| T |
2449217 |
accaccattatcatcgctcaccgcttatccaccatcagaactgcagatatcattgcaatcgttcaaaatggtaagatcgtggaaacaggatctcacgaaa |
2449316 |
T |
|
| Q |
109 |
gcctcatgcaaaatgacaattctctttacacatcccttgttcgtctccaacaaactagaaatgaccaaagtgatgacactccatctatcatgaatagaga |
208 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
2449317 |
gccttatgcaaaatgacagctctctttacacctccctcgttcgtcttcaacaaactagaaatgaccaaagtgaccacactccacctatcatgaatagaga |
2449416 |
T |
|
| Q |
209 |
tcacatggaaaacacgagtagtcgtaaacttgtgaggcattctagctctttcaactcaatgacacacggtggtgatgatatcgttaattatcacaatgat |
308 |
Q |
| |
|
|||||| |||||||| ||||| || ||| ||||| | ||||||||||||||||| ||||||||| ||| ||| |||| ||||||| | | |||||| | |
|
|
| T |
2449417 |
tcacatccaaaacacgtgtagtgatacactcgtgagtcgttctagctctttcaacttaatgacacatggtagtggtgatgtcgttaactgtaacaatgtt |
2449516 |
T |
|
| Q |
309 |
gttg |
312 |
Q |
| |
|
|||| |
|
|
| T |
2449517 |
gttg |
2449520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 2436030 - 2436334
Alignment:
| Q |
1 |
ttggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatgcagacattattgcggtcgttcaaaatggtctggtcatggaaatgggatc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||| | ||||||||| ||||| |
|
|
| T |
2436030 |
ttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatc |
2436129 |
T |
|
| Q |
101 |
tcacgatagcctcatgcaaaatgacaattctctttacacatcccttgttcgtctccaacaaactagaaatgaccaaagtgatgacactccatctatcatg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| ||||||||||||| |||| ||||||||| || | |||||||||| | ||| || | |||||||||| |
|
|
| T |
2436130 |
tcacgaaagcctcatgcaaaatgacagttccatttacacatccctagttcatctccaacacaccaaaaatgaccaagacggtgataccctatctatcatg |
2436229 |
T |
|
| Q |
201 |
aatagagatcacatggaaaacacgagtagtcgtaaacttgtgaggcattctagctctttcaactcaatgacacacggtggtgatgatatcgttaattatc |
300 |
Q |
| |
|
|||| | ||||||| |||| ||| | || |||| | ||||||||||||||||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
2436230 |
aataaacatcacat------------tagttgtagatttttgagtcgttctagctctttcaactcaatgacacatggtggtggtgatgtcgttaattata |
2436317 |
T |
|
| Q |
301 |
acaatgatgttgaagat |
317 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
2436318 |
acaatgttgttgaagat |
2436334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 2589860 - 2590125
Alignment:
| Q |
1 |
ttggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatgcagacattattgcggtcgttcaaaatggtctggtcatggaaatgggatc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||| | | |||||||| ||||| |
|
|
| T |
2589860 |
ttggacgcaccaccatcatcatcgctcaccgcctatctaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagattatggaaataggatc |
2589959 |
T |
|
| Q |
101 |
tcacgatagcctcatgcaaaatgacaattctctttacacatcccttgttcgtctccaacaaactagaaatgaccaaagtgatgacactccatctatcatg |
200 |
Q |
| |
|
|||||| |||||| ||||| |||||||||| |||| | |||||||||||||| |||||||| | || ||| ||| ||| ||||| |||||||||||| |
|
|
| T |
2589960 |
tcacgaaagcctcgtgcaagatgacaattcaatttatgcctcccttgttcgtcttcaacaaacaaaaagggacgaaactgacgacaccccatctatcatg |
2590059 |
T |
|
| Q |
201 |
aatagagatcacatggaaaacacgagtagtcgtaaacttgtgaggcattctagctctttcaactca |
266 |
Q |
| |
|
|||| |||||||||| |||||||||||| | ||| ||| || || | ||||||||| || |||||| |
|
|
| T |
2590060 |
aataaagatcacatgcaaaacacgagtacttgtagactcgttagtccttctagctccttgaactca |
2590125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2598344 - 2598288
Alignment:
| Q |
1 |
ttggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatgcagaca |
57 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2598344 |
ttggacgcaccaccatcatcatcgctcaccgattatctaccatccaaaatgcagaca |
2598288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1773 times since January 2019
Visitors: 2197