View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0154_2D_low_93 (Length: 424)

Name: NF0154_2D_low_93
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0154_2D_low_93
NF0154_2D_low_93
[»] chr2 (2 HSPs)
chr2 (215-408)||(36572405-36572589)
chr2 (35-140)||(36572225-36572330)
[»] chr6 (3 HSPs)
chr6 (36-139)||(1673663-1673766)
chr6 (36-115)||(31989384-31989463)
chr6 (68-115)||(32005886-32005933)
[»] chr5 (2 HSPs)
chr5 (39-139)||(31072187-31072285)
chr5 (64-119)||(39994975-39995030)
[»] scaffold0060 (1 HSPs)
scaffold0060 (36-107)||(54032-54103)
[»] chr1 (2 HSPs)
chr1 (36-108)||(28461129-28461201)
chr1 (39-98)||(3609312-3609371)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 215 - 408
Target Start/End: Original strand, 36572405 - 36572589
Alignment:
Q  215 atgttgtgtctagctggaatgactctacaatcatctataataaaatcatattctaatctattgaatttcacattgtgaagaaaatcatcaacaacttaat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  36572405 atgttgtgtctagctggaatgactctacaatcatctataataaaatcatatt---------tgaatttcacattgtgaagaaaatcatcaacaacttaat 36572495  T
Q  315 tgtttgtaatcaaatttaaaaatgatatttcttagaccataagctattagtaatccaatgaagtgcttgaaacaaactccaagctactactaag 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36572496 tgtttgtaatcaaatttaaaaatgatatttcttagaccataagctattagtaatccaatgaagtgcttgaaacaaactccaagctactactaag 36572589  T

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Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 36572225 - 36572330
Alignment:
Q  35 cgataaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgatttgtgtacatagtactcatatttatagag 134  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36572225 cgataaaagagttttataactcaagtgaaagtaaaatttattgaaaattatattgatcaaaagatagtgatttgtgtacatagtactcatatttatagag 36572324  T
Q  135 ttcaat 140  Q
    ||||||    
T  36572325 ttcaat 36572330  T

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Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 1673766 - 1673663
Alignment:
Q  36 gataaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgatttgtgtacatagtactcatatttatagagt 135  Q
    |||||||||  |||||| ||||| |||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||| ||||  ||||||||| ||    
T  1673766 gataaaagaactttatagctcaaatgaaagtaaaatttattggaaattatattgatgaaaagatggtgatttgtgtacataatacttctatttatagcgt 1673667  T
Q  136 tcaa 139  Q
    ||||    
T  1673666 tcaa 1673663  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 31989463 - 31989384
Alignment:
Q  36 gataaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgatttgtgtacat 115  Q
    |||||||||| || ||| ||||| ||||||||| |||||||||||||||||  ||||||||||| |||||||| ||||||    
T  31989463 gataaaagagcttaatagctcaaatgaaagtaatatttatagaaaattataccgatcaaaagatggtgatttgagtacat 31989384  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 32005933 - 32005886
Alignment:
Q  68 aaatttatagaaaattatattgatcaaaagatagtgatttgtgtacat 115  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  32005933 aaatttatagaaaattatattggtcaaaagatggtgatttgagtacat 32005886  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 31072187 - 31072285
Alignment:
Q  39 aaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgatttgtgtacatagtactcatatttatagagttca 138  Q
    ||||||| |||||| ||||| ||||||| ||||| ||||||| |||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||||    
T  31072187 aaaagagctttatagctcaaatgaaagttaaattcatagaaacttatattgatcaaaagatggtgatttgtctacataatactc--atttatagagttca 31072284  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 39995030 - 39994975
Alignment:
Q  64 agtaaaatttatagaaaattatattgatcaaaagatagtgatttgtgtacatagta 119  Q
    ||||||||| |||||||||||||||||||||||||| || ||||| ||||| ||||    
T  39995030 agtaaaattcatagaaaattatattgatcaaaagatggtaatttgagtacacagta 39994975  T

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Target: scaffold0060 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 54032 - 54103
Alignment:
Q  36 gataaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgattt 107  Q
    ||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||| |||||| || |||||||    
T  54032 gataaaagagtttaatagctcaaatgaaagtaatatttatagaaaattatattggtcaaaatatggtgattt 54103  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 28461201 - 28461129
Alignment:
Q  36 gataaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaagatagtgatttg 108  Q
    |||||||||  || ||||| |||||| |||||||||| ||||||||||||||||||||||| ||||| |||||    
T  28461201 gataaaagaacttaataacacaagtggaagtaaaattcatagaaaattatattgatcaaaacatagtaatttg 28461129  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 3609312 - 3609371
Alignment:
Q  39 aaaagagttttataactcaagtgaaagtaaaatttatagaaaattatattgatcaaaaga 98  Q
    ||||||| ||||||| |||||||||||||| ||  ||| |||||||||||||||||||||    
T  3609312 aaaagagctttataaatcaagtgaaagtaagatacataaaaaattatattgatcaaaaga 3609371  T

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