View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_2D_low_98 (Length: 416)
Name: NF0154_2D_low_98
Description: NF0154_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_2D_low_98 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 43017790 - 43017394
Alignment:
| Q |
1 |
atattctgtttggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaatcaagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017790 |
atattctgtttggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaatcaagg |
43017691 |
T |
|
| Q |
101 |
ctatccaaaaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017690 |
ctatccaaaaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactc |
43017591 |
T |
|
| Q |
201 |
tttcaaaagctgaatttttcataaaatattagaataagtcttgccctatatgtgactcattcaaaagctgaattgtgcatgcaaaacacaaaaatgatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017590 |
tttcaaaagctgaatttttcataaaatattagaataagtcttgccctatatgtgactcattcaaaagctgaattgtgcatgcaaaacacaaaaatgatat |
43017491 |
T |
|
| Q |
301 |
ataagcaacaaacaagaaaaccatttcctcttccaattttcttctattcttggttacatctcctgtgacctctgagataaattcgacttgttatgta |
397 |
Q |
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| T |
43017490 |
ataagcaacaaacaagaaaaccatttcctcttccaattttcttctattcttggttacatctcctgtgacctctgagataaattcgacttgttatgta |
43017394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 35057657 - 35057433
Alignment:
| Q |
11 |
tggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaa-tcaaggctatccaaa |
109 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| | || || ||||||| |
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| T |
35057657 |
tggaattatagcacaaagttctgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaacgccatccaaa |
35057558 |
T |
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| Q |
110 |
aataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaag |
209 |
Q |
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||| | || ||||||||||||| | ||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| |
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| T |
35057557 |
aatgaagtt-----------------tcccaaaatttactgaccttgccttatttttttcacctcataaacggtttttatgcaagtgactctttcaaaag |
35057475 |
T |
|
| Q |
210 |
ctgaatttttcataaaatattagaataagtcttgccctatat |
251 |
Q |
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| T |
35057474 |
ctgaatttttcataaaatattagaatatgtcttgccctatat |
35057433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 35057230 - 35057145
Alignment:
| Q |
309 |
caaacaagaaaaccatttcctcttccaattttcttctattcttggttacatctcctgtgacctctgagataaattcgacttgttatgta |
397 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| ||||||||| || ||||| |||| |
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| T |
35057230 |
caaacaagaaaaccatttcctcttccaatt---ttctattcttggttacatctccagtgatctctaagataaatttgatttgttctgta |
35057145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 38569809 - 38569757
Alignment:
| Q |
61 |
tttagagttattttatttcaaaagttaat-aaaaatcaaggctatccaaaaat |
112 |
Q |
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|
||||||||||||||||||||||||||| | ||||| |||||||||||||||| |
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|
| T |
38569809 |
tttagagttattttatttcaaaagttagtaaaaaaataaggctatccaaaaat |
38569757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 14328897 - 14328987
Alignment:
| Q |
131 |
atttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttca |
221 |
Q |
| |
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|||||| ||||| ||||| |||||||| |||||||| |||| | |||| | |||||||||||||||| ||||||| | |||||||||| |
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| T |
14328897 |
attttttccaaagtttactaaccttgcctcatttttctgacctaaaaaacagtttttatgcaagtgacttattcaaaatcagaatttttca |
14328987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 14421907 - 14421997
Alignment:
| Q |
131 |
atttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttca |
221 |
Q |
| |
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|||||| ||||| ||||| |||||||| |||||||| |||| | |||| | |||||||||||||||| ||||||| | |||||||||| |
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| T |
14421907 |
attttttccaaagtttactaaccttgcctcatttttctgacctaaaaaacagtttttatgcaagtgacttattcaaaatcagaatttttca |
14421997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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