View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_high_5 (Length: 255)
Name: NF0154_high_5
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 36472305 - 36472527
Alignment:
| Q |
1 |
ccaatttattccttgatctccattggaagctataactctttttcctttgtataaaagtatagcctcatatccactcactcctacagctataggtacctga |
100 |
Q |
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| T |
36472305 |
ccaatttattccttgatctccattggaagctataactctttttcctttgtataaaagtatagcctcatatccactcactcctatagctataggtacctga |
36472404 |
T |
|
| Q |
101 |
aaaaacaagggaaaaagaagaaagtcatacccatcctattattatatacatttcattgattctcaagacacaatgcaactttgaggccatatatatatgc |
200 |
Q |
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| T |
36472405 |
aaaaacaagggaaaaagaagaaagtcatacccatcctattattatatacatttcattgattctcaagaca-----caactttgaggcc--atatatatgc |
36472497 |
T |
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| Q |
201 |
ttcgttgattaacctagatatataaagcac |
230 |
Q |
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||||||||||||||| |||||||||||||| |
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| T |
36472498 |
ttcgttgattaacctggatatataaagcac |
36472527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 36463155 - 36463263
Alignment:
| Q |
1 |
ccaatttattccttgatctccattggaagctataactctttttcctttgtataaaagtatagcctcatatccactcactcctacagctataggtacctga |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| | |||||||||| ||| |||||||||||||||||||||| | |
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| T |
36463155 |
ccaatttattccttgatctcccttggaagctataacttttttccctttgtataaaagcacagcctcatatgaacttactcctacagctataggtacctaa |
36463254 |
T |
|
| Q |
101 |
aaaaacaag |
109 |
Q |
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||||||||| |
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| T |
36463255 |
aaaaacaag |
36463263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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