View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_low_12 (Length: 251)
Name: NF0154_low_12
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42325872 - 42325633
Alignment:
| Q |
1 |
aacaaaacactagtcgtgctcctcctaatgtaacgtaattgcagcgtggagtggaacgaaagacatttggcttaaaagtggtttagccaatagtatgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325872 |
aacaaaacactagtcgtgctcctcctaatgtaacgtaattgcagcgtggagtggaacgaaagacatttggcttaaaagtggtttagccaatagtatgatt |
42325773 |
T |
|
| Q |
101 |
taagtgatcttatatagataaaagccctatagctttagtagaaaagccggcaaatttccnnnnnnngtgttgagttaaaatgttaccaaccaaataannn |
200 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
42325772 |
taagtgatctcatctagataaaagccctatagctttagtagaaaagccggcaaatttccaaaaaaagtgttgagttaaaatgttaccaaccaaataattt |
42325673 |
T |
|
| Q |
201 |
nnnncaagcaatctatttttagtcaagaccctaccttcat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
42325672 |
ttttcaagcaatctatttttagtcaagaccctaccttcat |
42325633 |
T |
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