View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0154_low_3 (Length: 369)
Name: NF0154_low_3
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 2 - 359
Target Start/End: Complemental strand, 38015160 - 38014803
Alignment:
| Q |
2 |
catcacaccccatgttagcaaatgcatcaactcaatgagaagcctcgcaataagaaccacatatgttgatctcccaatccatcgcaagtagattctgaat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38015160 |
catcacaccccatgttagcaaatgcatcaactcaatgagaagcctcgcaataagaatcacatatgttgatctcccaaaccatcgcaagtagattctgaat |
38015061 |
T |
|
| Q |
102 |
cttatggatcaatctccaacctcacaacgtcaccacgactcaaacttctcacaaccacttctgaatctacacaaatcactatgaccataaaacatctatt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38015060 |
cttatggatcaatctccaacctcacaacgtcaccacgactcaaacttctcacaaccacttctgaatctacacaaatcactatgaccataaaacttctatt |
38014961 |
T |
|
| Q |
202 |
ttgcactactcgcaaacctttaaagatggccacaaatgcattacaataactaagatagttagagaaacgaaccacatatccaattaccatttagaccaca |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38014960 |
ttgcactactcgcaaacctttaaagatggccacaaatgcattacaataactaagatagttagagaaatgaaccacatatccaattaccatttagaccaca |
38014861 |
T |
|
| Q |
302 |
aatcaatccccccatgaccagaaaccaacccacctctcctctactcgcaccatctgtg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38014860 |
aatcaatccccccatgaccagaaaccaacccacctctcctctactcgcaccatctgtg |
38014803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6906 times since January 2019
Visitors: 9351