View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0154_low_4 (Length: 334)
Name: NF0154_low_4
Description: NF0154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0154_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 30 - 324
Target Start/End: Original strand, 52262600 - 52262894
Alignment:
| Q |
30 |
ataaggaaccaaaatttcatccattaaagggtacccagaatttccagcaacccaagcatctttcaaatctcccttcacaattctcttaaacaaatccgat |
129 |
Q |
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| T |
52262600 |
ataaggaaccaaaatttcatccattaaagggtacccagaatttccagcaacccaagcatctttcaaatctcccttcacaattctcttaaacaaatccgat |
52262699 |
T |
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| Q |
130 |
ttctcgaaaacctgttcatcagaataagaaccaggccaaccaatacacacgttagtgaaaatccctttagactcaaccacaccctgaacagtaaaagagt |
229 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52262700 |
ttctcgaaaacctattcatcagaataagaaccaggccaaccaatacacacgttagtgaaaatccctttagactcaaccacaccctgaacagtaaaagagt |
52262799 |
T |
|
| Q |
230 |
aagaatttttcttgttcctctgagtgtgtcttttattgaaataataagaattcgcattggagtttggtgcaattatgggaatatgagtagaataa |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |
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| T |
52262800 |
aagaatttttcttgttcctctgagtgtgtcttttattgaaataataagaattcacattggagttaggtgcaattatgggaatatgagtagtataa |
52262894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 314
Target Start/End: Original strand, 52250958 - 52251239
Alignment:
| Q |
30 |
ataaggaaccaaaatttcatccattaaagggtacccagaatttccagcaacccaagcatctttcaaatctccct-tcacaattctcttaaacaaatccga |
128 |
Q |
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|||||||||||||||| ||||||| |||||| |||||||||||||| ||||||||| ||||||||||| ||||| ||| | ||||| | ||| | || |
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| T |
52250958 |
ataaggaaccaaaattccatccatcaaagggaacccagaatttccaacaacccaagaatctttcaaat-tccctgtcatagctctctgatacattacaga |
52251056 |
T |
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| Q |
129 |
tttctcgaaaacctgttcatcagaataagaaccaggccaaccaatacacacgttagtgaaaatccctttagactcaaccacaccctgaacagtaaaagag |
228 |
Q |
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|||||| ||||| || |||||| |||||||||||| |||||| | | || | |||||||| |||||||| ||||||||||| |||||||||| |||| |
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| T |
52251057 |
tttctccaaaacttgatcatcattataagaaccagggtaaccaagaaaaacatcagtgaaaacccctttagcatcaaccacaccttgaacagtaacagag |
52251156 |
T |
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| Q |
229 |
taagaatttttcttgttcctctgagtgtgtcttttattgaaataataagaattcgcattggagtttggtgcaattatgggaatatg |
314 |
Q |
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|| | | |||||| |||||||||||| || || ||||||| ||||||||||| ||||| || ||||||||||| |||||||| |
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| T |
52251157 |
tatgcagttttctggttcctctgagtctgcctcttattga---aataagaattcacattgttcttaggtgcaattattggaatatg |
52251239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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