View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0155-INSERTION-2 (Length: 655)

Name: NF0155-INSERTION-2
Description: NF0155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0155-INSERTION-2
NF0155-INSERTION-2
[»] chr4 (13 HSPs)
chr4 (1-543)||(14173758-14174303)
chr4 (1-543)||(14178512-14179057)
chr4 (1-542)||(44161408-44161949)
chr4 (136-543)||(28611567-28611977)
chr4 (136-544)||(28606804-28607215)
chr4 (135-542)||(11104427-11104829)
chr4 (240-544)||(48826700-48827000)
chr4 (541-655)||(14173648-14173762)
chr4 (541-655)||(14178402-14178516)
chr4 (541-655)||(44161298-44161412)
chr4 (267-428)||(24726288-24726446)
chr4 (343-444)||(48708155-48708256)
chr4 (99-198)||(24726535-24726634)
[»] chr8 (4 HSPs)
chr8 (135-543)||(12930631-12931041)
chr8 (135-542)||(12935377-12935786)
chr8 (335-447)||(26504945-26505055)
chr8 (337-449)||(15588948-15589060)
[»] chr5 (6 HSPs)
chr5 (1-542)||(29106878-29107418)
chr5 (22-543)||(42910992-42911513)
chr5 (539-655)||(42911805-42911927)
chr5 (564-655)||(29107414-29107505)
chr5 (358-448)||(38997230-38997320)
chr5 (462-543)||(38994698-38994779)
[»] chr1 (1 HSPs)
chr1 (135-542)||(34907094-34907503)
[»] chr7 (10 HSPs)
chr7 (135-542)||(37040426-37040836)
chr7 (1-543)||(15290058-15290595)
chr7 (135-542)||(12098960-12099361)
chr7 (1-194)||(15302765-15302960)
chr7 (541-655)||(15289948-15290062)
chr7 (135-392)||(12081973-12082227)
chr7 (541-655)||(15302655-15302769)
chr7 (305-383)||(2757370-2757448)
chr7 (459-542)||(12084668-12084751)
chr7 (487-543)||(2757212-2757268)
[»] chr2 (1 HSPs)
chr2 (136-544)||(8539139-8539550)
[»] chr3 (3 HSPs)
chr3 (137-323)||(51302118-51302306)
chr3 (460-543)||(51302937-51303020)
chr3 (409-449)||(51302304-51302344)
[»] chr6 (2 HSPs)
chr6 (358-542)||(2100199-2100379)
chr6 (317-365)||(2100723-2100771)


Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 14173758 - 14174303
Alignment:
1 ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
14173758 ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagggcatagcatttaactcttcatcagccgatttcccct 14173857  T
101 ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
14173858 ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgt 14173957  T
199 tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14173958 tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct 14174057  T
299 cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14174058 cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg 14174157  T
399 tggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggatt 497  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||          | |||||||||||||||||||||||||||||||||||||    
14174158 tggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctcttttggatt 14174257  T
498 ttggaattttaatttacacttgcgttaagctcgttgagcccaacaa 543  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
14174258 ttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa 14174303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 14178512 - 14179057
Alignment:
1 ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
14178512 ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagccgatttcccct 14178611  T
101 ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgt 198  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||    
14178612 ataaataaaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgt 14178711  T
199 tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14178712 tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct 14178811  T
299 cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14178812 cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg 14178911  T
399 tggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggatt 497  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||    
14178912 tggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctcttttggatt 14179011  T
498 ttggaattttaatttacacttgcgttaagctcgttgagcccaacaa 543  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
14179012 ttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa 14179057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 44161408 - 44161949
Alignment:
1 ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44161408 ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct 44161507  T
101 ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaat-acaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgtt 199  Q
    |||||||||||||||||||||||||||||  ||  ||||||||||||||||  |||||| ||||||||||||| |||||||||||||| |||||||||||    
44161508 ataaatagaggggtacttgaaggaatgaaggcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtagaggtgtgtgagaggaataatagagtgtt 44161607  T
200 gagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
44161608 gagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctt 44161707  T
300 acgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgt 399  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
44161708 acgggaaacactatattgtatctcttgtgtgtgtaagagagtggagaga--attgtaatattctttaatatagtggaatatttttcggagtttgtcccgt 44161805  T
400 ggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattt 498  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||| ||||||||||||||    
44161806 ggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatctcttttggattt 44161905  T
499 tggaattttaatttacacttgcgttaagctcgttgagcccaaca 542  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
44161906 tggaattttaatttacacttgcgttaagctcgtcgagcccaaca 44161949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 136 - 543
Target Start/End: Complemental strand, 28611977 - 28611567
Alignment:
136 gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg 233  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28611977 gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg 28611878  T
234 ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28611877 ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt 28611778  T
334 gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
28611777 gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgt 28611678  T
434 taaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt 532  Q
    ||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
28611677 taaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc 28611578  T
533 gagcccaacaa 543  Q
    |||||||||||    
28611577 gagcccaacaa 28611567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 136 - 544
Target Start/End: Complemental strand, 28607215 - 28606804
Alignment:
136 gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg 233  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28607215 gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg 28607116  T
234 ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28607115 ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt 28607016  T
334 gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
28607015 gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgt 28606916  T
434 taaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt 532  Q
    |||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
28606915 taaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc 28606816  T
533 gagcccaacaat 544  Q
    ||||||||||||    
28606815 gagcccaacaat 28606804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 11104427 - 11104829
Alignment:
135 tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg 234  Q
    |||||||||||| ||| ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
11104427 tgaagcagaagtcaaa-tacaaagcttctatgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaatacaccgg 11104525  T
235 gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtg 334  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| |||||||     
11104526 gtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgtatctctt-tgtgtgta 11104624  T
335 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgtt 434  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||| |||  ||||| ||||||||| ||||| | |||    
11104625 agagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtgg-tttaccctcgatattagaggattttctatgtt 11104723  T
435 aaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttga 534  Q
    |||||||||||||||         |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
11104724 aaatattggtgttcatttttat--cgctacagctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcga 11104821  T
535 gcccaaca 542  Q
    ||||||||    
11104822 gcccaaca 11104829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 240 - 544
Target Start/End: Complemental strand, 48827000 - 48826700
Alignment:
240 tatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||| |||   |||||||||||||||||||||||||||||||||||||| |||||    
48827000 tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgtaagaga 48826901  T
340 gtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaata 439  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||||    
48826900 gcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaata 48826802  T
440 ttggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagccca 539  Q
    |||||||||          ||||||||||||||||||||||||| ||||  ||| |||||| |||||||||||||| ||||||||||||||| || ||||    
48826801 ttggtgttc-tttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatccca 48826705  T
540 acaat 544  Q
    |||||    
48826704 acaat 48826700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 14173648 - 14173762
Alignment:
541 caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14173648 caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg 14173747  T
641 gtggagcagtttgaa 655  Q
    |||||||||||||||    
14173748 gtggagcagtttgaa 14173762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 14178402 - 14178516
Alignment:
541 caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14178402 caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg 14178501  T
641 gtggagcagtttgaa 655  Q
    |||||||||||||||    
14178502 gtggagcagtttgaa 14178516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 44161298 - 44161412
Alignment:
541 caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44161298 caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg 44161397  T
641 gtggagcagtttgaa 655  Q
    |||||||||||||||    
44161398 gtggagcagtttgaa 44161412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 267 - 428
Target Start/End: Complemental strand, 24726446 - 24726288
Alignment:
267 taaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattcttta 366  Q
    |||||||||| |||| |||||| ||| |||||||||| ||||| |||| ||||||||  ||||  || ||||| ||||||||||||| | || |||||||    
24726446 taaaataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctc--gtgtcggtaagagaatggagagaatattattatgttcttta 24726350  T
367 atatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttc 428  Q
    ||||| ||||||||||||| ||||||||| ||||| |||| ||| | ||||||| |||||||    
24726349 atataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc 24726288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 343 - 444
Target Start/End: Complemental strand, 48708256 - 48708155
Alignment:
343 gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaatattg 442  Q
    ||||||||||||||||||| ||||||||| || ||||||||| |||||||||| ||||||||||  ||  |||||| || ||||| || |||||||||||    
48708256 gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg 48708157  T
443 gt 444  Q
    ||    
48708156 gt 48708155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 24726634 - 24726535
Alignment:
99 ctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgt 198  Q
    |||||||| |||||||| ||||||||| |||| ||   ||| ||||||  |||||||||| |||||| ||||||||||| |||  | ||| |||||||||    
24726634 ctataaattgaggggtatttgaaggaaggaaagcatctaagaagaagttgaaatacaaagcttctgtctgtagaagtgtatgaatgaaaagatagagtgt 24726535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 135 - 543
Target Start/End: Original strand, 12930631 - 12931041
Alignment:
135 tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 232  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12930631 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 12930730  T
233 gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
12930731 gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg 12930830  T
333 tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
12930831 tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg 12930930  T
433 ttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt 532  Q
    |||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
12930931 ttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc 12931030  T
533 gagcccaacaa 543  Q
    |||||||||||    
12931031 gagcccaacaa 12931041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 12935377 - 12935786
Alignment:
135 tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 232  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12935377 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 12935476  T
233 gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
12935477 gggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg 12935576  T
333 tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
12935577 tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg 12935676  T
433 ttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt 532  Q
    |||||||||||||||||         ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||     
12935677 ttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttcttttgaattttggaattttaatttacacttgcgttaagctcgtc 12935776  T
533 gagcccaaca 542  Q
    ||||||||||    
12935777 gagcccaaca 12935786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 335 - 447
Target Start/End: Complemental strand, 26505055 - 26504945
Alignment:
335 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgtt 434  Q
    ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | |||| |||| ||| | ||||||| ||| || ||||||    
26505055 agagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtgg-ttttgccttgttattagacggtatt-cacgtt 26504958  T
435 aaatattggtgtt 447  Q
    |||||||| ||||    
26504957 aaatattgatgtt 26504945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 449
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
337 agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaa 436  Q
    |||||||||| ||| |||||||||| ||| ||| |||| |||||||||  ||||||||| | || |||||  |||  || ||||||||||| ||   |||    
15588948 agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa 15589047  T
437 atattggtgttca 449  Q
    |||||| ||||||    
15589048 atattgatgttca 15589060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 29107418 - 29106878
Alignment:
1 ttgaaagcatgacataaaatatagtttt-cacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccc 99  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||| ||||||| || |||||||||||||||||||||||| |||||| ||||||||| |    
29107418 ttgaaaacatgacataaaatatagtttttcacacattgaggacataactttggcgtaaaaggagtgcatagcatttaactcatcatcaactgatttcctc 29107319  T
100 tataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgt--gtagaagtgtgtgagaggaaaaatagagtg 197  Q
    |||||||| |||||||||||||||||||||| ||  |||||||||||| |||||||||| |||| |||  ||||||||||||||||| ||||||||  ||    
29107318 tataaataaaggggtacttgaaggaatgaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtagaagtgtgtgagagaaaaaatag--tg 29107221  T
198 ttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggt 296  Q
    |||||||||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
29107220 ttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggt 29107121  T
297 ctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcc 396  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29107120 ctcacgggaaacactat-ttgtatctcttgtgtgtgtaagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcc 29107022  T
397 cgtggttttttcctcggtattagagggttttccacgttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggat 496  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||| ||| ||||||||    
29107021 cgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttaa--cgctaccgctgcgctgcaagatccaatcttttttggat 29106924  T
497 tttggaattttaatttacacttgcgttaagctcgttgagcccaaca 542  Q
    |||||||||||||||||||||||| |||||||| | || |||||||    
29106923 tttggaattttaatttacacttgcattaagctcctcgatcccaaca 29106878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 22 - 543
Target Start/End: Complemental strand, 42911513 - 42910992
Alignment:
22 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagag-gggtacttga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||    
42911513 tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactctt-ataagctgatttcctctataaatagagagggtacttga 42911415  T
121 aggaatgaaatcaatgaagcagaagtgaaaat-acaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtg 217  Q
    |||||||||| ||  ||||||||||||||||  |||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||    
42911414 aggaatgaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtg 42911315  T
218 tgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattg 317  Q
    ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
42911314 tggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattg 42911215  T
318 tatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtatt 417  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||    
42911214 tatcttttgtgtgtgtgagagagtggagagaatattgtaatattcttaaatatagtggaata-ttttcggagtttgtcccgtggtttttccctcggtatt 42911116  T
418 agagggttttccacgttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacact 517  Q
    ||||||||||||| ||||||||||||||||||         || | |||||||||||||||||| | |||||||||||||||  ||||||||||| ||||    
42911115 agagggttttccatgttaaatattggtgttcatttttat--cgttgccgctgcgctgcaagatctaatctcttttggattttaaaattttaatttccact 42911018  T
518 tgcgttaagctcgttgagcccaacaa 543  Q
    |||||||||||||| |||||||||||    
42911017 tgcgttaagctcgtcgagcccaacaa 42910992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 539 - 655
Target Start/End: Complemental strand, 42911927 - 42911805
Alignment:
539 aacaattgtcaaattcttctacacattaa------atgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacat 632  Q
    ||||||||||||| |||||||||||||||      ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
42911927 aacaattgtcaaagtcttctacacattaaccgtaaatgcatggcttagtttttcttttcaaatagtttggctatgtataggatgtgcagagaacacacat 42911828  T
633 agcttgcggtggagcagtttgaa 655  Q
    |||||||| ||||||||||||||    
42911827 agcttgcgatggagcagtttgaa 42911805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 564 - 655
Target Start/End: Complemental strand, 29107505 - 29107414
Alignment:
564 ttaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcggtggagcagtttgaa 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||    
29107505 ttaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgttcagagaacacacatagcttgtggtgaagcagtttgaa 29107414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 448
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
358 tattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaatattggtgttc 448  Q
    |||||||||||||| |||| ||||||| |||||||||||||| ||||||   ||| ||||||||||||||| |||| |||||||| |||||    
38997320 tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc 38997230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 543
Target Start/End: Complemental strand, 38994779 - 38994698
Alignment:
462 taccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaacaa 543  Q
    ||||||||| |||||||||||| | |  ||||| |||||||||||||||||||||| || ||||| ||||  ||||||||||    
38994779 taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaacaa 38994698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 34907094 - 34907503
Alignment:
135 tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 232  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34907094 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 34907193  T
233 gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
34907194 gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg 34907293  T
333 tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
34907294 tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg 34907393  T
433 ttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt 532  Q
    |||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
34907394 ttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc 34907493  T
533 gagcccaaca 542  Q
    ||||||||||    
34907494 gagcccaaca 34907503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 135 - 542
Target Start/End: Complemental strand, 37040836 - 37040426
Alignment:
135 tgaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc 232  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
37040836 tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatc 37040737  T
233 gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
37040736 gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgtatctcttgtgtgtg 37040637  T
333 tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg 432  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
37040636 tgagagagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg 37040537  T
433 ttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgt 531  Q
    |||||||||||||||||          ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
37040536 ttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttttttggattttggaattttaatttacacttgcgttaagctcgt 37040437  T
532 tgagcccaaca 542  Q
     ||||||||||    
37040436 cgagcccaaca 37040426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 15290058 - 15290595
Alignment:
1 ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct 100  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| ||    
15290058 ttgaaagcatgacataaaatatagttttcacacattgaagacatgactttggtgtgaaagaaatgcatagcatttaactcttcatcaactgatttcctct 15290157  T
101 ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaa---gtttctgtgtgtagaagtgtgtgagaggaaaaatagagtg 197  Q
    |||||||||||||||||||||||||||||| ||  | ||||||||||||||||||||   | ||||||||||||||||||||||||      ||||||||    
15290158 ataaatagaggggtacttgaaggaatgaaagcatcgtagcagaagtgaaaatacaaaaaagcttctgtgtgtagaagtgtgtgaga------atagagtg 15290251  T
198 ttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtc 297  Q
    |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||| ||| ||||    
15290252 ttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggtgctg--aaataatagcattcgaataggagtgggtc 15290348  T
298 tcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtccc 397  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||    
15290349 tcacgg-aaacactatattgtatctcttgtgtgtgtaagagagtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtccc 15290447  T
398 gtggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctc-ttttgga 495  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||          |||||  |||||||||||||||||| |||| |||||||    
15290448 gtggtttatacctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatctctttttgga 15290547  T
496 ttttggaattttaatttacacttgcgttaagctcgttgagcccaacaa 543  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||    
15290548 ttttgaaattttaatttacaattgcgttaagctcgtcgagcccaacaa 15290595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 12098960 - 12099361
Alignment:
135 tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg 234  Q
    ||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||  | | |  |||||| |  |     
12098960 tgaagtagaagtgaaactacaaagtttttgtgtgtagaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag--tctcg--aaaatagattga 12099055  T
235 gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtg 334  Q
    ||| |||||||||||||||||| |||||| |||||||||||| |||| |||||| |||  |||||||  ||||||| ||||||| ||||||||| ||||     
12099056 gtgagtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgta 12099155  T
335 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgtt 434  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||||||| | |||  ||||||||||||| |||||     
12099156 agagagtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgta 12099255  T
435 aaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttga 534  Q
    |||||||| | ||||         ||||| || || |||||||||||   ||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
12099256 aaatattgcttttcatttttat--cgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgtcga 12099353  T
535 gcccaaca 542  Q
    ||||||||    
12099354 gcccaaca 12099361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15302765 - 15302960
Alignment:
1 ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct 100  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||    
15302765 ttgaaagcatgacataaaatatagttttcacacattgaagacatgactttcgtgtgaaaggagtccatagcatttaactcttcatcaactgatttcctct 15302864  T
101 ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaagtgtgtgagaggaaaaataga 194  Q
    |||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||||| |||  |||||||||||||||||||||| |||||||||    
15302865 ataaatagaggggtacttgaaggaatgaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga 15302960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 15289948 - 15290062
Alignment:
541 caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg 640  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15289948 caattgtcaaagtcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg 15290047  T
641 gtggagcagtttgaa 655  Q
    |||||||||||||||    
15290048 gtggagcagtttgaa 15290062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 135 - 392
Target Start/End: Original strand, 12081973 - 12082227
Alignment:
135 tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg 234  Q
    ||||||| ||||||| ||||||||||| | |||||||||||||||||   ||||| |||||||||| ||||||||||| |  | |||||||||| | |||    
12081973 tgaagcataagtgaagatacaaagttttt-tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgg 12082070  T
235 gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtg 334  Q
    || ||||| |||||||||||||||||| |||||||||||||| |||| |||||| ||   ||||||   |||||||||||||||||||||| |  ||||     
12082071 gtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctcttttccgtgta 12082170  T
335 agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagttt 392  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||    
12082171 agagagtggagaaaatattgtaatattc-ttaatatagtggaatattttttggagttt 12082227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 15302655 - 15302769
Alignment:
541 caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg 640  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
15302655 caattgtcaaagtcttctacacattaaatgcatggcttagattttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgca 15302754  T
641 gtggagcagtttgaa 655  Q
    |||||||||||||||    
15302755 gtggagcagtttgaa 15302769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 2757448 - 2757370
Alignment:
305 aaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttt 383  Q
    |||||||||||||||||||||| |||||  ||||||||||||||||| || |||||| || ||||||||||||||||||    
2757448 aaacactatattgtatctcttgagtgtgaaagagagtggagagaatagtgcaatatttttaaatatagtggaatatttt 2757370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 12084668 - 12084751
Alignment:
459 cgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaaca 542  Q
    |||||||| |||||| ||||||||| | ||| |||||||||| ||||||||||||| || | ||||||||||||||||||||||    
12084668 cgctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca 12084751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 543
Target Start/End: Complemental strand, 2757268 - 2757212
Alignment:
487 tcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaacaa 543  Q
    ||||||| |||||||||||||||||||||||||   |||||||||||| | ||||||    
2757268 tcttttgaattttggaattttaatttacacttgtaataagctcgttgaacacaacaa 2757212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 136 - 544
Target Start/End: Original strand, 8539139 - 8539550
Alignment:
136 gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg 233  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||    
8539139 gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaaatacatcg 8539238  T
234 ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactata---ttgtatctcttgtgtg 330  Q
    | ||||||||||||||||||||| |||||||| ||||||||||||| | |||||| ||| |||||||||| ||||||||||   ||||||||||||||||    
8539239 gatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcacgg-aaacactataatattgtatctcttgtgtg 8539337  T
331 tgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttcca 430  Q
    ||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||    
8539338 tgtaagagagtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccctcggtattagagggttttcca 8539437  T
431 cgttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcg 530  Q
    |||||||||||| ||||||          | |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||    
8539438 cgttaaatattgatgttcattttttat-tgttaccgctgcgctgcaagatccaatctcttttagaatttggaattttaatttacacttgcgttaagctcg 8539536  T
531 ttgagcccaacaat 544  Q
    | ||||||||||||    
8539537 tcgagcccaacaat 8539550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 5e-67; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 137 - 323
Target Start/End: Original strand, 51302118 - 51302306
Alignment:
137 aagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg 234  Q
    ||||| |||||||||||||||| |||||||  |||||||||||||| ||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
51302118 aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgg 51302217  T
235 gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc 323  Q
    ||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||| ||| ||||||||||||||||||||||||||||||    
51302218 gtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc 51302306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 460 - 543
Target Start/End: Original strand, 51302937 - 51303020
Alignment:
460 gctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaacaa 543  Q
    |||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |||||||||| || ||||||||    
51302937 gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaacaa 51303020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 51302304 - 51302344
Alignment:
409 ctcggtattagagggttttccacgttaaatattggtgttca 449  Q
    |||||||||||||||||||||||||||||||||||||||||    
51302304 ctcggtattagagggttttccacgttaaatattggtgttca 51302344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 358 - 542
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
358 tattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaatattggtgttcannnnnnnn 457  Q
    |||||||||||||||||||||||||||||||||||| |||||   ||||  |||  ||||| |||||||||||| |||||||||| ||||||            
2100379 tattctttaatatagtggaatatttttcggagtttgccccgt---ttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttat- 2100284  T
458 ccgctaccgctgcgctgcaaga-tccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaaca 542  Q
     |  || || || ||||||| | || | |||||| || ||||||||||||||||||||||||| ||||||||||| ||||||||||    
2100283 -cattatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca 2100199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
317 gtatctcttgtgtgtgtgagagagtggagagaatattgtaatattcttt 365  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
2100771 gtatctcttgtgtatgtaagagagtggagagaatattgtaatattcttt 2100723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

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