View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0155-INSERTION-2 (Length: 655)
Name: NF0155-INSERTION-2
Description: NF0155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0155-INSERTION-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 14173758 - 14174303
Alignment:
| Q |
1 |
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14173758 |
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagggcatagcatttaactcttcatcagccgatttcccct |
14173857 |
T |
|
| Q |
101 |
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14173858 |
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgt |
14173957 |
T |
|
| Q |
199 |
tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173958 |
tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct |
14174057 |
T |
|
| Q |
299 |
cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174058 |
cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg |
14174157 |
T |
|
| Q |
399 |
tggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggatt |
497 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174158 |
tggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctcttttggatt |
14174257 |
T |
|
| Q |
498 |
ttggaattttaatttacacttgcgttaagctcgttgagcccaacaa |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14174258 |
ttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
14174303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 14178512 - 14179057
Alignment:
| Q |
1 |
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14178512 |
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagccgatttcccct |
14178611 |
T |
|
| Q |
101 |
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgt |
198 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14178612 |
ataaataaaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgt |
14178711 |
T |
|
| Q |
199 |
tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178712 |
tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct |
14178811 |
T |
|
| Q |
299 |
cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178812 |
cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg |
14178911 |
T |
|
| Q |
399 |
tggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggatt |
497 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178912 |
tggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctcttttggatt |
14179011 |
T |
|
| Q |
498 |
ttggaattttaatttacacttgcgttaagctcgttgagcccaacaa |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14179012 |
ttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
14179057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 44161408 - 44161949
Alignment:
| Q |
1 |
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161408 |
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct |
44161507 |
T |
|
| Q |
101 |
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaat-acaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgtt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
44161508 |
ataaatagaggggtacttgaaggaatgaaggcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtagaggtgtgtgagaggaataatagagtgtt |
44161607 |
T |
|
| Q |
200 |
gagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161608 |
gagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctt |
44161707 |
T |
|
| Q |
300 |
acgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161708 |
acgggaaacactatattgtatctcttgtgtgtgtaagagagtggagaga--attgtaatattctttaatatagtggaatatttttcggagtttgtcccgt |
44161805 |
T |
|
| Q |
400 |
ggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattt |
498 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44161806 |
ggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatctcttttggattt |
44161905 |
T |
|
| Q |
499 |
tggaattttaatttacacttgcgttaagctcgttgagcccaaca |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44161906 |
tggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
44161949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 136 - 543
Target Start/End: Complemental strand, 28611977 - 28611567
Alignment:
| Q |
136 |
gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg |
233 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611977 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg |
28611878 |
T |
|
| Q |
234 |
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611877 |
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt |
28611778 |
T |
|
| Q |
334 |
gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgt |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
28611777 |
gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgt |
28611678 |
T |
|
| Q |
434 |
taaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt |
532 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611677 |
taaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc |
28611578 |
T |
|
| Q |
533 |
gagcccaacaa |
543 |
Q |
| |
|
||||||||||| |
|
|
| T |
28611577 |
gagcccaacaa |
28611567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 136 - 544
Target Start/End: Complemental strand, 28607215 - 28606804
Alignment:
| Q |
136 |
gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg |
233 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607215 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg |
28607116 |
T |
|
| Q |
234 |
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607115 |
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt |
28607016 |
T |
|
| Q |
334 |
gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgt |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
28607015 |
gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgt |
28606916 |
T |
|
| Q |
434 |
taaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt |
532 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606915 |
taaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc |
28606816 |
T |
|
| Q |
533 |
gagcccaacaat |
544 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28606815 |
gagcccaacaat |
28606804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 11104427 - 11104829
Alignment:
| Q |
135 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg |
234 |
Q |
| |
|
|||||||||||| ||| ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11104427 |
tgaagcagaagtcaaa-tacaaagcttctatgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaatacaccgg |
11104525 |
T |
|
| Q |
235 |
gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtg |
334 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11104526 |
gtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgtatctctt-tgtgtgta |
11104624 |
T |
|
| Q |
335 |
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgtt |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||| | ||| |
|
|
| T |
11104625 |
agagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtgg-tttaccctcgatattagaggattttctatgtt |
11104723 |
T |
|
| Q |
435 |
aaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttga |
534 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11104724 |
aaatattggtgttcatttttat--cgctacagctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcga |
11104821 |
T |
|
| Q |
535 |
gcccaaca |
542 |
Q |
| |
|
|||||||| |
|
|
| T |
11104822 |
gcccaaca |
11104829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 240 - 544
Target Start/End: Complemental strand, 48827000 - 48826700
Alignment:
| Q |
240 |
tatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagaga |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48827000 |
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgtaagaga |
48826901 |
T |
|
| Q |
340 |
gtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaata |
439 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
48826900 |
gcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaata |
48826802 |
T |
|
| Q |
440 |
ttggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagccca |
539 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||| ||| |||||| |||||||||||||| ||||||||||||||| || |||| |
|
|
| T |
48826801 |
ttggtgttc-tttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatccca |
48826705 |
T |
|
| Q |
540 |
acaat |
544 |
Q |
| |
|
||||| |
|
|
| T |
48826704 |
acaat |
48826700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 14173648 - 14173762
Alignment:
| Q |
541 |
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173648 |
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg |
14173747 |
T |
|
| Q |
641 |
gtggagcagtttgaa |
655 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14173748 |
gtggagcagtttgaa |
14173762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 14178402 - 14178516
Alignment:
| Q |
541 |
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178402 |
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg |
14178501 |
T |
|
| Q |
641 |
gtggagcagtttgaa |
655 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14178502 |
gtggagcagtttgaa |
14178516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 44161298 - 44161412
Alignment:
| Q |
541 |
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161298 |
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg |
44161397 |
T |
|
| Q |
641 |
gtggagcagtttgaa |
655 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44161398 |
gtggagcagtttgaa |
44161412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 267 - 428
Target Start/End: Complemental strand, 24726446 - 24726288
Alignment:
| Q |
267 |
taaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattcttta |
366 |
Q |
| |
|
|||||||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||| |||| || ||||| ||||||||||||| | || ||||||| |
|
|
| T |
24726446 |
taaaataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctc--gtgtcggtaagagaatggagagaatattattatgttcttta |
24726350 |
T |
|
| Q |
367 |
atatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttc |
428 |
Q |
| |
|
||||| ||||||||||||| ||||||||| ||||| |||| ||| | ||||||| ||||||| |
|
|
| T |
24726349 |
atataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc |
24726288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 343 - 444
Target Start/End: Complemental strand, 48708256 - 48708155
Alignment:
| Q |
343 |
gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaatattg |
442 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| |||||||||| |||||||||| || |||||| || ||||| || ||||||||||| |
|
|
| T |
48708256 |
gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg |
48708157 |
T |
|
| Q |
443 |
gt |
444 |
Q |
| |
|
|| |
|
|
| T |
48708156 |
gt |
48708155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 24726634 - 24726535
Alignment:
| Q |
99 |
ctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgt |
198 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||| || ||| |||||| |||||||||| |||||| ||||||||||| ||| | ||| ||||||||| |
|
|
| T |
24726634 |
ctataaattgaggggtatttgaaggaaggaaagcatctaagaagaagttgaaatacaaagcttctgtctgtagaagtgtatgaatgaaaagatagagtgt |
24726535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 135 - 543
Target Start/End: Original strand, 12930631 - 12931041
Alignment:
| Q |
135 |
tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
232 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930631 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
12930730 |
T |
|
| Q |
233 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930731 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
12930830 |
T |
|
| Q |
333 |
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12930831 |
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg |
12930930 |
T |
|
| Q |
433 |
ttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt |
532 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930931 |
ttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc |
12931030 |
T |
|
| Q |
533 |
gagcccaacaa |
543 |
Q |
| |
|
||||||||||| |
|
|
| T |
12931031 |
gagcccaacaa |
12931041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 12935377 - 12935786
Alignment:
| Q |
135 |
tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
232 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935377 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
12935476 |
T |
|
| Q |
233 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935477 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
12935576 |
T |
|
| Q |
333 |
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12935577 |
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg |
12935676 |
T |
|
| Q |
433 |
ttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt |
532 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935677 |
ttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttcttttgaattttggaattttaatttacacttgcgttaagctcgtc |
12935776 |
T |
|
| Q |
533 |
gagcccaaca |
542 |
Q |
| |
|
|||||||||| |
|
|
| T |
12935777 |
gagcccaaca |
12935786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 335 - 447
Target Start/End: Complemental strand, 26505055 - 26504945
Alignment:
| Q |
335 |
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgtt |
434 |
Q |
| |
|
||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | |||| |||| ||| | ||||||| ||| || |||||| |
|
|
| T |
26505055 |
agagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtgg-ttttgccttgttattagacggtatt-cacgtt |
26504958 |
T |
|
| Q |
435 |
aaatattggtgtt |
447 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
26504957 |
aaatattgatgtt |
26504945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 449
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
| Q |
337 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaa |
436 |
Q |
| |
|
|||||||||| ||| |||||||||| ||| ||| |||| ||||||||| ||||||||| | || ||||| ||| || ||||||||||| || ||| |
|
|
| T |
15588948 |
agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa |
15589047 |
T |
|
| Q |
437 |
atattggtgttca |
449 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
15589048 |
atattgatgttca |
15589060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 29107418 - 29106878
Alignment:
| Q |
1 |
ttgaaagcatgacataaaatatagtttt-cacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccc |
99 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| ||||||| ||||||| || |||||||||||||||||||||||| |||||| ||||||||| | |
|
|
| T |
29107418 |
ttgaaaacatgacataaaatatagtttttcacacattgaggacataactttggcgtaaaaggagtgcatagcatttaactcatcatcaactgatttcctc |
29107319 |
T |
|
| Q |
100 |
tataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgt--gtagaagtgtgtgagaggaaaaatagagtg |
197 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||||||||||| |||||||||| |||| ||| ||||||||||||||||| |||||||| || |
|
|
| T |
29107318 |
tataaataaaggggtacttgaaggaatgaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtagaagtgtgtgagagaaaaaatag--tg |
29107221 |
T |
|
| Q |
198 |
ttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29107220 |
ttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggt |
29107121 |
T |
|
| Q |
297 |
ctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcc |
396 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29107120 |
ctcacgggaaacactat-ttgtatctcttgtgtgtgtaagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcc |
29107022 |
T |
|
| Q |
397 |
cgtggttttttcctcggtattagagggttttccacgttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggat |
496 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
29107021 |
cgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttaa--cgctaccgctgcgctgcaagatccaatcttttttggat |
29106924 |
T |
|
| Q |
497 |
tttggaattttaatttacacttgcgttaagctcgttgagcccaaca |
542 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | || ||||||| |
|
|
| T |
29106923 |
tttggaattttaatttacacttgcattaagctcctcgatcccaaca |
29106878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 22 - 543
Target Start/End: Complemental strand, 42911513 - 42910992
Alignment:
| Q |
22 |
tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagag-gggtacttga |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
42911513 |
tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactctt-ataagctgatttcctctataaatagagagggtacttga |
42911415 |
T |
|
| Q |
121 |
aggaatgaaatcaatgaagcagaagtgaaaat-acaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtg |
217 |
Q |
| |
|
|||||||||| || |||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42911414 |
aggaatgaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtg |
42911315 |
T |
|
| Q |
218 |
tgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattg |
317 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42911314 |
tggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattg |
42911215 |
T |
|
| Q |
318 |
tatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtatt |
417 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42911214 |
tatcttttgtgtgtgtgagagagtggagagaatattgtaatattcttaaatatagtggaata-ttttcggagtttgtcccgtggtttttccctcggtatt |
42911116 |
T |
|
| Q |
418 |
agagggttttccacgttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacact |
517 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || | |||||||||||||||||| | ||||||||||||||| ||||||||||| |||| |
|
|
| T |
42911115 |
agagggttttccatgttaaatattggtgttcatttttat--cgttgccgctgcgctgcaagatctaatctcttttggattttaaaattttaatttccact |
42911018 |
T |
|
| Q |
518 |
tgcgttaagctcgttgagcccaacaa |
543 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
42911017 |
tgcgttaagctcgtcgagcccaacaa |
42910992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 539 - 655
Target Start/End: Complemental strand, 42911927 - 42911805
Alignment:
| Q |
539 |
aacaattgtcaaattcttctacacattaa------atgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacat |
632 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42911927 |
aacaattgtcaaagtcttctacacattaaccgtaaatgcatggcttagtttttcttttcaaatagtttggctatgtataggatgtgcagagaacacacat |
42911828 |
T |
|
| Q |
633 |
agcttgcggtggagcagtttgaa |
655 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
42911827 |
agcttgcgatggagcagtttgaa |
42911805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 564 - 655
Target Start/End: Complemental strand, 29107505 - 29107414
Alignment:
| Q |
564 |
ttaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcggtggagcagtttgaa |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
29107505 |
ttaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgttcagagaacacacatagcttgtggtgaagcagtttgaa |
29107414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 448
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
| Q |
358 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaatattggtgttc |
448 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| |||||| ||| ||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
38997320 |
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc |
38997230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 543
Target Start/End: Complemental strand, 38994779 - 38994698
Alignment:
| Q |
462 |
taccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaacaa |
543 |
Q |
| |
|
||||||||| |||||||||||| | | ||||| |||||||||||||||||||||| || ||||| |||| |||||||||| |
|
|
| T |
38994779 |
taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaacaa |
38994698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 34907094 - 34907503
Alignment:
| Q |
135 |
tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
232 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907094 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
34907193 |
T |
|
| Q |
233 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907194 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
34907293 |
T |
|
| Q |
333 |
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34907294 |
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg |
34907393 |
T |
|
| Q |
433 |
ttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt |
532 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907394 |
ttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc |
34907493 |
T |
|
| Q |
533 |
gagcccaaca |
542 |
Q |
| |
|
|||||||||| |
|
|
| T |
34907494 |
gagcccaaca |
34907503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 135 - 542
Target Start/End: Complemental strand, 37040836 - 37040426
Alignment:
| Q |
135 |
tgaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
232 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37040836 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatc |
37040737 |
T |
|
| Q |
233 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37040736 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgtatctcttgtgtgtg |
37040637 |
T |
|
| Q |
333 |
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg |
432 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37040636 |
tgagagagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg |
37040537 |
T |
|
| Q |
433 |
ttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgt |
531 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040536 |
ttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttttttggattttggaattttaatttacacttgcgttaagctcgt |
37040437 |
T |
|
| Q |
532 |
tgagcccaaca |
542 |
Q |
| |
|
|||||||||| |
|
|
| T |
37040436 |
cgagcccaaca |
37040426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 15290058 - 15290595
Alignment:
| Q |
1 |
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| || |
|
|
| T |
15290058 |
ttgaaagcatgacataaaatatagttttcacacattgaagacatgactttggtgtgaaagaaatgcatagcatttaactcttcatcaactgatttcctct |
15290157 |
T |
|
| Q |
101 |
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaa---gtttctgtgtgtagaagtgtgtgagaggaaaaatagagtg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | |||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
15290158 |
ataaatagaggggtacttgaaggaatgaaagcatcgtagcagaagtgaaaatacaaaaaagcttctgtgtgtagaagtgtgtgaga------atagagtg |
15290251 |
T |
|
| Q |
198 |
ttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtc |
297 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||| |
|
|
| T |
15290252 |
ttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggtgctg--aaataatagcattcgaataggagtgggtc |
15290348 |
T |
|
| Q |
298 |
tcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtccc |
397 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| || ||| |||||||||||| |
|
|
| T |
15290349 |
tcacgg-aaacactatattgtatctcttgtgtgtgtaagagagtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtccc |
15290447 |
T |
|
| Q |
398 |
gtggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctc-ttttgga |
495 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
15290448 |
gtggtttatacctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatctctttttgga |
15290547 |
T |
|
| Q |
496 |
ttttggaattttaatttacacttgcgttaagctcgttgagcccaacaa |
543 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
15290548 |
ttttgaaattttaatttacaattgcgttaagctcgtcgagcccaacaa |
15290595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 12098960 - 12099361
Alignment:
| Q |
135 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg |
234 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||||| | | | |||||| | | |
|
|
| T |
12098960 |
tgaagtagaagtgaaactacaaagtttttgtgtgtagaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag--tctcg--aaaatagattga |
12099055 |
T |
|
| Q |
235 |
gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtg |
334 |
Q |
| |
|
||| |||||||||||||||||| |||||| |||||||||||| |||| |||||| ||| ||||||| ||||||| ||||||| ||||||||| |||| |
|
|
| T |
12099056 |
gtgagtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgta |
12099155 |
T |
|
| Q |
335 |
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgtt |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| | ||| ||||||||||||| ||||| |
|
|
| T |
12099156 |
agagagtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgta |
12099255 |
T |
|
| Q |
435 |
aaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttga |
534 |
Q |
| |
|
|||||||| | |||| ||||| || || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| || |
|
|
| T |
12099256 |
aaatattgcttttcatttttat--cgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgtcga |
12099353 |
T |
|
| Q |
535 |
gcccaaca |
542 |
Q |
| |
|
|||||||| |
|
|
| T |
12099354 |
gcccaaca |
12099361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15302765 - 15302960
Alignment:
| Q |
1 |
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| || |
|
|
| T |
15302765 |
ttgaaagcatgacataaaatatagttttcacacattgaagacatgactttcgtgtgaaaggagtccatagcatttaactcttcatcaactgatttcctct |
15302864 |
T |
|
| Q |
101 |
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaagtgtgtgagaggaaaaataga |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
15302865 |
ataaatagaggggtacttgaaggaatgaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga |
15302960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 15289948 - 15290062
Alignment:
| Q |
541 |
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg |
640 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15289948 |
caattgtcaaagtcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg |
15290047 |
T |
|
| Q |
641 |
gtggagcagtttgaa |
655 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15290048 |
gtggagcagtttgaa |
15290062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 135 - 392
Target Start/End: Original strand, 12081973 - 12082227
Alignment:
| Q |
135 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg |
234 |
Q |
| |
|
||||||| ||||||| ||||||||||| | ||||||||||||||||| ||||| |||||||||| ||||||||||| | | |||||||||| | ||| |
|
|
| T |
12081973 |
tgaagcataagtgaagatacaaagttttt-tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgg |
12082070 |
T |
|
| Q |
235 |
gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtg |
334 |
Q |
| |
|
|| ||||| |||||||||||||||||| |||||||||||||| |||| |||||| || |||||| |||||||||||||||||||||| | |||| |
|
|
| T |
12082071 |
gtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctcttttccgtgta |
12082170 |
T |
|
| Q |
335 |
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagttt |
392 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
12082171 |
agagagtggagaaaatattgtaatattc-ttaatatagtggaatattttttggagttt |
12082227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 15302655 - 15302769
Alignment:
| Q |
541 |
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg |
640 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15302655 |
caattgtcaaagtcttctacacattaaatgcatggcttagattttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgca |
15302754 |
T |
|
| Q |
641 |
gtggagcagtttgaa |
655 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15302755 |
gtggagcagtttgaa |
15302769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 2757448 - 2757370
Alignment:
| Q |
305 |
aaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttt |
383 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| || |||||||||||||||||| |
|
|
| T |
2757448 |
aaacactatattgtatctcttgagtgtgaaagagagtggagagaatagtgcaatatttttaaatatagtggaatatttt |
2757370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 12084668 - 12084751
Alignment:
| Q |
459 |
cgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaaca |
542 |
Q |
| |
|
|||||||| |||||| ||||||||| | ||| |||||||||| ||||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
12084668 |
cgctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca |
12084751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 543
Target Start/End: Complemental strand, 2757268 - 2757212
Alignment:
| Q |
487 |
tcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaacaa |
543 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
2757268 |
tcttttgaattttggaattttaatttacacttgtaataagctcgttgaacacaacaa |
2757212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 136 - 544
Target Start/End: Original strand, 8539139 - 8539550
Alignment:
| Q |
136 |
gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg |
233 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| || |
|
|
| T |
8539139 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaaatacatcg |
8539238 |
T |
|
| Q |
234 |
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactata---ttgtatctcttgtgtg |
330 |
Q |
| |
|
| ||||||||||||||||||||| |||||||| ||||||||||||| | |||||| ||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
8539239 |
gatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcacgg-aaacactataatattgtatctcttgtgtg |
8539337 |
T |
|
| Q |
331 |
tgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttcca |
430 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
8539338 |
tgtaagagagtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccctcggtattagagggttttcca |
8539437 |
T |
|
| Q |
431 |
cgttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcg |
530 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
8539438 |
cgttaaatattgatgttcattttttat-tgttaccgctgcgctgcaagatccaatctcttttagaatttggaattttaatttacacttgcgttaagctcg |
8539536 |
T |
|
| Q |
531 |
ttgagcccaacaat |
544 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
8539537 |
tcgagcccaacaat |
8539550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 5e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 137 - 323
Target Start/End: Original strand, 51302118 - 51302306
Alignment:
| Q |
137 |
aagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg |
234 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51302118 |
aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgg |
51302217 |
T |
|
| Q |
235 |
gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
323 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
51302218 |
gtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc |
51302306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 460 - 543
Target Start/End: Original strand, 51302937 - 51303020
Alignment:
| Q |
460 |
gctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaacaa |
543 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |||||||||| || |||||||| |
|
|
| T |
51302937 |
gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaacaa |
51303020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 51302304 - 51302344
Alignment:
| Q |
409 |
ctcggtattagagggttttccacgttaaatattggtgttca |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302304 |
ctcggtattagagggttttccacgttaaatattggtgttca |
51302344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 358 - 542
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
| Q |
358 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaatattggtgttcannnnnnnn |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
2100379 |
tattctttaatatagtggaatatttttcggagtttgccccgt---ttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttat- |
2100284 |
T |
|
| Q |
458 |
ccgctaccgctgcgctgcaaga-tccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaaca |
542 |
Q |
| |
|
| || || || ||||||| | || | |||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
2100283 |
-cattatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca |
2100199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
| Q |
317 |
gtatctcttgtgtgtgtgagagagtggagagaatattgtaatattcttt |
365 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2100771 |
gtatctcttgtgtatgtaagagagtggagagaatattgtaatattcttt |
2100723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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