View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Query
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Query hiting target's complemental strand
Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0155-INSERTION-2 (Length: 655)
Name: NF0155-INSERTION-2
Description: NF0155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0155-INSERTION-2
Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 14173758 - 14174303
Alignment:
Q
1
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
T
14173758
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagggcatagcatttaactcttcatcagccgatttcccct
14173857
T
Q
101
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgt
198
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
T
14173858
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgt
14173957
T
Q
199
tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct
298
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
14173958
tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct
14174057
T
Q
299
cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg
398
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
14174058
cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg
14174157
T
Q
399
tggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggatt
497
Q
|||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
T
14174158
tggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctcttttggatt
14174257
T
Q
498
ttggaattttaatttacacttgcgttaagctcgttgagcccaacaa
543
Q
|||||||||||||||||||||||||||||||||| |||||||||||
T
14174258
ttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa
14174303
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 14178512 - 14179057
Alignment:
Q
1
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
T
14178512
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagccgatttcccct
14178611
T
Q
101
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgt
198
Q
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
T
14178612
ataaataaaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgt
14178711
T
Q
199
tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct
298
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
14178712
tgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtct
14178811
T
Q
299
cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg
398
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
14178812
cacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccg
14178911
T
Q
399
tggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggatt
497
Q
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
T
14178912
tggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctcttttggatt
14179011
T
Q
498
ttggaattttaatttacacttgcgttaagctcgttgagcccaacaa
543
Q
|||||||||||||||||||||||||||||||||| |||||||||||
T
14179012
ttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa
14179057
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 44161408 - 44161949
Alignment:
Q
1
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44161408
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct
44161507
T
Q
101
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaat-acaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgtt
199
Q
||||||||||||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||||
T
44161508
ataaatagaggggtacttgaaggaatgaaggcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtagaggtgtgtgagaggaataatagagtgtt
44161607
T
Q
200
gagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctc
299
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44161608
gagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctt
44161707
T
Q
300
acgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgt
399
Q
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
T
44161708
acgggaaacactatattgtatctcttgtgtgtgtaagagagtggagaga--attgtaatattctttaatatagtggaatatttttcggagtttgtcccgt
44161805
T
Q
400
ggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattt
498
Q
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
T
44161806
ggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccaatctcttttggattt
44161905
T
Q
499
tggaattttaatttacacttgcgttaagctcgttgagcccaaca
542
Q
||||||||||||||||||||||||||||||||| ||||||||||
T
44161906
tggaattttaatttacacttgcgttaagctcgtcgagcccaaca
44161949
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 136 - 543
Target Start/End: Complemental strand, 28611977 - 28611567
Alignment:
Q
136
gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg
233
Q
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28611977
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg
28611878
T
Q
234
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt
333
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28611877
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt
28611778
T
Q
334
gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgt
433
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
T
28611777
gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgt
28611678
T
Q
434
taaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt
532
Q
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28611677
taaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc
28611578
T
Q
533
gagcccaacaa
543
Q
|||||||||||
T
28611577
gagcccaacaa
28611567
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 136 - 544
Target Start/End: Complemental strand, 28607215 - 28606804
Alignment:
Q
136
gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg
233
Q
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28607215
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg
28607116
T
Q
234
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt
333
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28607115
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt
28607016
T
Q
334
gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgt
433
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
T
28607015
gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgt
28606916
T
Q
434
taaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt
532
Q
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28606915
taaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc
28606816
T
Q
533
gagcccaacaat
544
Q
||||||||||||
T
28606815
gagcccaacaat
28606804
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 11104427 - 11104829
Alignment:
Q
135
tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg
234
Q
|||||||||||| ||| ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
T
11104427
tgaagcagaagtcaaa-tacaaagcttctatgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtaggaaaaatacaccgg
11104525
T
Q
235
gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtg
334
Q
|||| |||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| |||||||
T
11104526
gtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgtatctctt-tgtgtgta
11104624
T
Q
335
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgtt
434
Q
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||| | |||
T
11104625
agagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtgg-tttaccctcgatattagaggattttctatgtt
11104723
T
Q
435
aaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttga
534
Q
||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
T
11104724
aaatattggtgttcatttttat--cgctacagctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcga
11104821
T
Q
535
gcccaaca
542
Q
||||||||
T
11104822
gcccaaca
11104829
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 240 - 544
Target Start/End: Complemental strand, 48827000 - 48826700
Alignment:
Q
240
tatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagaga
339
Q
|||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||
T
48827000
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgtaagaga
48826901
T
Q
340
gtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaata
439
Q
| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||||
T
48826900
gcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaata
48826802
T
Q
440
ttggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagccca
539
Q
||||||||| ||||||||||||||||||||||||| |||| ||| |||||| |||||||||||||| ||||||||||||||| || ||||
T
48826801
ttggtgttc-tttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatccca
48826705
T
Q
540
acaat
544
Q
|||||
T
48826704
acaat
48826700
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 14173648 - 14173762
Alignment:
Q
541
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg
640
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
14173648
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg
14173747
T
Q
641
gtggagcagtttgaa
655
Q
|||||||||||||||
T
14173748
gtggagcagtttgaa
14173762
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 14178402 - 14178516
Alignment:
Q
541
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg
640
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
14178402
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg
14178501
T
Q
641
gtggagcagtttgaa
655
Q
|||||||||||||||
T
14178502
gtggagcagtttgaa
14178516
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 44161298 - 44161412
Alignment:
Q
541
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg
640
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44161298
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg
44161397
T
Q
641
gtggagcagtttgaa
655
Q
|||||||||||||||
T
44161398
gtggagcagtttgaa
44161412
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 267 - 428
Target Start/End: Complemental strand, 24726446 - 24726288
Alignment:
Q
267
taaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattcttta
366
Q
|||||||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||| |||| || ||||| ||||||||||||| | || |||||||
T
24726446
taaaataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctc--gtgtcggtaagagaatggagagaatattattatgttcttta
24726350
T
Q
367
atatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttc
428
Q
||||| ||||||||||||| ||||||||| ||||| |||| ||| | ||||||| |||||||
T
24726349
atataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc
24726288
T
Back To:
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 343 - 444
Target Start/End: Complemental strand, 48708256 - 48708155
Alignment:
Q
343
gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaatattg
442
Q
||||||||||||||||||| ||||||||| || ||||||||| |||||||||| |||||||||| || |||||| || ||||| || |||||||||||
T
48708256
gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg
48708157
T
Q
443
gt
444
Q
||
T
48708156
gt
48708155
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 24726634 - 24726535
Alignment:
Q
99
ctataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgt
198
Q
|||||||| |||||||| ||||||||| |||| || ||| |||||| |||||||||| |||||| ||||||||||| ||| | ||| |||||||||
T
24726634
ctataaattgaggggtatttgaaggaaggaaagcatctaagaagaagttgaaatacaaagcttctgtctgtagaagtgtatgaatgaaaagatagagtgt
24726535
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 135 - 543
Target Start/End: Original strand, 12930631 - 12931041
Alignment:
Q
135
tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc
232
Q
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
12930631
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc
12930730
T
Q
233
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg
332
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
T
12930731
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg
12930830
T
Q
333
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg
432
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
T
12930831
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg
12930930
T
Q
433
ttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt
532
Q
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
12930931
ttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc
12931030
T
Q
533
gagcccaacaa
543
Q
|||||||||||
T
12931031
gagcccaacaa
12931041
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 12935377 - 12935786
Alignment:
Q
135
tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc
232
Q
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
12935377
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc
12935476
T
Q
233
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg
332
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
T
12935477
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg
12935576
T
Q
333
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg
432
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
T
12935577
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg
12935676
T
Q
433
ttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt
532
Q
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
T
12935677
ttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttcttttgaattttggaattttaatttacacttgcgttaagctcgtc
12935776
T
Q
533
gagcccaaca
542
Q
||||||||||
T
12935777
gagcccaaca
12935786
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 335 - 447
Target Start/End: Complemental strand, 26505055 - 26504945
Alignment:
Q
335
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgtt
434
Q
||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | |||| |||| ||| | ||||||| ||| || ||||||
T
26505055
agagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtgg-ttttgccttgttattagacggtatt-cacgtt
26504958
T
Q
435
aaatattggtgtt
447
Q
|||||||| ||||
T
26504957
aaatattgatgtt
26504945
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 449
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
Q
337
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaa
436
Q
|||||||||| ||| |||||||||| ||| ||| |||| ||||||||| ||||||||| | || ||||| ||| || ||||||||||| || |||
T
15588948
agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa
15589047
T
Q
437
atattggtgttca
449
Q
|||||| ||||||
T
15589048
atattgatgttca
15589060
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 29107418 - 29106878
Alignment:
Q
1
ttgaaagcatgacataaaatatagtttt-cacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccc
99
Q
|||||| ||||||||||||||||||||| |||||||| ||||||| ||||||| || |||||||||||||||||||||||| |||||| ||||||||| |
T
29107418
ttgaaaacatgacataaaatatagtttttcacacattgaggacataactttggcgtaaaaggagtgcatagcatttaactcatcatcaactgatttcctc
29107319
T
Q
100
tataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttctgtgt--gtagaagtgtgtgagaggaaaaatagagtg
197
Q
|||||||| |||||||||||||||||||||| || |||||||||||| |||||||||| |||| ||| ||||||||||||||||| |||||||| ||
T
29107318
tataaataaaggggtacttgaaggaatgaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtagaagtgtgtgagagaaaaaatag--tg
29107221
T
Q
198
ttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggt
296
Q
||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
T
29107220
ttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggt
29107121
T
Q
297
ctcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcc
396
Q
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
29107120
ctcacgggaaacactat-ttgtatctcttgtgtgtgtaagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcc
29107022
T
Q
397
cgtggttttttcctcggtattagagggttttccacgttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggat
496
Q
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||
T
29107021
cgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttaa--cgctaccgctgcgctgcaagatccaatcttttttggat
29106924
T
Q
497
tttggaattttaatttacacttgcgttaagctcgttgagcccaaca
542
Q
|||||||||||||||||||||||| |||||||| | || |||||||
T
29106923
tttggaattttaatttacacttgcattaagctcctcgatcccaaca
29106878
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 22 - 543
Target Start/End: Complemental strand, 42911513 - 42910992
Alignment:
Q
22
tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccctataaatagag-gggtacttga
120
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||
T
42911513
tagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactctt-ataagctgatttcctctataaatagagagggtacttga
42911415
T
Q
121
aggaatgaaatcaatgaagcagaagtgaaaat-acaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtg
217
Q
|||||||||| || |||||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
T
42911414
aggaatgaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtg
42911315
T
Q
218
tgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattg
317
Q
||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
T
42911314
tggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattg
42911215
T
Q
318
tatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtatt
417
Q
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||
T
42911214
tatcttttgtgtgtgtgagagagtggagagaatattgtaatattcttaaatatagtggaata-ttttcggagtttgtcccgtggtttttccctcggtatt
42911116
T
Q
418
agagggttttccacgttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacact
517
Q
||||||||||||| |||||||||||||||||| || | |||||||||||||||||| | ||||||||||||||| ||||||||||| ||||
T
42911115
agagggttttccatgttaaatattggtgttcatttttat--cgttgccgctgcgctgcaagatctaatctcttttggattttaaaattttaatttccact
42911018
T
Q
518
tgcgttaagctcgttgagcccaacaa
543
Q
|||||||||||||| |||||||||||
T
42911017
tgcgttaagctcgtcgagcccaacaa
42910992
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 539 - 655
Target Start/End: Complemental strand, 42911927 - 42911805
Alignment:
Q
539
aacaattgtcaaattcttctacacattaa------atgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacat
632
Q
||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
T
42911927
aacaattgtcaaagtcttctacacattaaccgtaaatgcatggcttagtttttcttttcaaatagtttggctatgtataggatgtgcagagaacacacat
42911828
T
Q
633
agcttgcggtggagcagtttgaa
655
Q
|||||||| ||||||||||||||
T
42911827
agcttgcgatggagcagtttgaa
42911805
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 564 - 655
Target Start/End: Complemental strand, 29107505 - 29107414
Alignment:
Q
564
ttaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcggtggagcagtttgaa
655
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||
T
29107505
ttaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgttcagagaacacacatagcttgtggtgaagcagtttgaa
29107414
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 448
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
Q
358
tattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaatattggtgttc
448
Q
|||||||||||||| |||| ||||||| |||||||||||||| |||||| ||| ||||||||||||||| |||| |||||||| |||||
T
38997320
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc
38997230
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 543
Target Start/End: Complemental strand, 38994779 - 38994698
Alignment:
Q
462
taccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaacaa
543
Q
||||||||| |||||||||||| | | ||||| |||||||||||||||||||||| || ||||| |||| ||||||||||
T
38994779
taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaacaa
38994698
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 34907094 - 34907503
Alignment:
Q
135
tgaagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc
232
Q
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
34907094
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc
34907193
T
Q
233
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg
332
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
T
34907194
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg
34907293
T
Q
333
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg
432
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
T
34907294
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg
34907393
T
Q
433
ttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtt
532
Q
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
34907394
ttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtc
34907493
T
Q
533
gagcccaaca
542
Q
||||||||||
T
34907494
gagcccaaca
34907503
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 135 - 542
Target Start/End: Complemental strand, 37040836 - 37040426
Alignment:
Q
135
tgaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc
232
Q
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
T
37040836
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatc
37040737
T
Q
233
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg
332
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
T
37040736
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgtatctcttgtgtgtg
37040637
T
Q
333
tgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacg
432
Q
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
T
37040636
tgagagagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacg
37040537
T
Q
433
ttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgt
531
Q
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
T
37040536
ttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttttttggattttggaattttaatttacacttgcgttaagctcgt
37040437
T
Q
532
tgagcccaaca
542
Q
||||||||||
T
37040436
cgagcccaaca
37040426
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 15290058 - 15290595
Alignment:
Q
1
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct
100
Q
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| ||
T
15290058
ttgaaagcatgacataaaatatagttttcacacattgaagacatgactttggtgtgaaagaaatgcatagcatttaactcttcatcaactgatttcctct
15290157
T
Q
101
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaa---gtttctgtgtgtagaagtgtgtgagaggaaaaatagagtg
197
Q
|||||||||||||||||||||||||||||| || | |||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
T
15290158
ataaatagaggggtacttgaaggaatgaaagcatcgtagcagaagtgaaaatacaaaaaagcttctgtgtgtagaagtgtgtgaga------atagagtg
15290251
T
Q
198
ttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtc
297
Q
|||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||
T
15290252
ttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggtgctg--aaataatagcattcgaataggagtgggtc
15290348
T
Q
298
tcacgggaaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtccc
397
Q
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||
T
15290349
tcacgg-aaacactatattgtatctcttgtgtgtgtaagagagtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtccc
15290447
T
Q
398
gtggttttttcctcggtattagagggttttccacgttaaatattggtgttca-nnnnnnnnccgctaccgctgcgctgcaagatccagtctc-ttttgga
495
Q
||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |||||||
T
15290448
gtggtttatacctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatctctttttgga
15290547
T
Q
496
ttttggaattttaatttacacttgcgttaagctcgttgagcccaacaa
543
Q
||||| |||||||||||||| ||||||||||||||| |||||||||||
T
15290548
ttttgaaattttaatttacaattgcgttaagctcgtcgagcccaacaa
15290595
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 135 - 542
Target Start/End: Original strand, 12098960 - 12099361
Alignment:
Q
135
tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg
234
Q
||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||||| | | | |||||| | |
T
12098960
tgaagtagaagtgaaactacaaagtttttgtgtgtagaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag--tctcg--aaaatagattga
12099055
T
Q
235
gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtg
334
Q
||| |||||||||||||||||| |||||| |||||||||||| |||| |||||| ||| ||||||| ||||||| ||||||| ||||||||| ||||
T
12099056
gtgagtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgta
12099155
T
Q
335
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgtt
434
Q
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| | ||| ||||||||||||| |||||
T
12099156
agagagtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgta
12099255
T
Q
435
aaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttga
534
Q
|||||||| | |||| ||||| || || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||
T
12099256
aaatattgcttttcatttttat--cgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgtcga
12099353
T
Q
535
gcccaaca
542
Q
||||||||
T
12099354
gcccaaca
12099361
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15302765 - 15302960
Alignment:
Q
1
ttgaaagcatgacataaaatatagttttcacacattaaggacatgactttggtgtgaaaggagtgcatagcatttaactcttcatcagctgatttcccct
100
Q
|||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||
T
15302765
ttgaaagcatgacataaaatatagttttcacacattgaagacatgactttcgtgtgaaaggagtccatagcatttaactcttcatcaactgatttcctct
15302864
T
Q
101
ataaatagaggggtacttgaaggaatgaaatcaatgaagcagaagtgaaaatacaaagtttc--tgtgtgtagaagtgtgtgagaggaaaaataga
194
Q
|||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||
T
15302865
ataaatagaggggtacttgaaggaatgaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga
15302960
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 15289948 - 15290062
Alignment:
Q
541
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg
640
Q
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
15289948
caattgtcaaagtcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg
15290047
T
Q
641
gtggagcagtttgaa
655
Q
|||||||||||||||
T
15290048
gtggagcagtttgaa
15290062
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 135 - 392
Target Start/End: Original strand, 12081973 - 12082227
Alignment:
Q
135
tgaagcagaagtgaaaatacaaagtttctgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg
234
Q
||||||| ||||||| ||||||||||| | ||||||||||||||||| ||||| |||||||||| ||||||||||| | | |||||||||| | |||
T
12081973
tgaagcataagtgaagatacaaagttttt-tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgg
12082070
T
Q
235
gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtg
334
Q
|| ||||| |||||||||||||||||| |||||||||||||| |||| |||||| || |||||| |||||||||||||||||||||| | ||||
T
12082071
gtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctcttttccgtgta
12082170
T
Q
335
agagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagttt
392
Q
|||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||
T
12082171
agagagtggagaaaatattgtaatattc-ttaatatagtggaatattttttggagttt
12082227
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 541 - 655
Target Start/End: Original strand, 15302655 - 15302769
Alignment:
Q
541
caattgtcaaattcttctacacattaaatgcatggcttagtttttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgcg
640
Q
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
15302655
caattgtcaaagtcttctacacattaaatgcatggcttagattttcctttcaaatagtttggctatgtataggttgtgcagagaacacacatagcttgca
15302754
T
Q
641
gtggagcagtttgaa
655
Q
|||||||||||||||
T
15302755
gtggagcagtttgaa
15302769
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 2757448 - 2757370
Alignment:
Q
305
aaacactatattgtatctcttgtgtgtgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttt
383
Q
|||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| || ||||||||||||||||||
T
2757448
aaacactatattgtatctcttgagtgtgaaagagagtggagagaatagtgcaatatttttaaatatagtggaatatttt
2757370
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 12084668 - 12084751
Alignment:
Q
459
cgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaaca
542
Q
|||||||| |||||| ||||||||| | ||| |||||||||| ||||||||||||| || | ||||||||||||||||||||||
T
12084668
cgctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca
12084751
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 543
Target Start/End: Complemental strand, 2757268 - 2757212
Alignment:
Q
487
tcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaacaa
543
Q
||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||
T
2757268
tcttttgaattttggaattttaatttacacttgtaataagctcgttgaacacaacaa
2757212
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 136 - 544
Target Start/End: Original strand, 8539139 - 8539550
Alignment:
Q
136
gaagcagaagtgaaaatacaaagtttctgtgtgt--agaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg
233
Q
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||
T
8539139
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaaatacatcg
8539238
T
Q
234
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactata---ttgtatctcttgtgtg
330
Q
| ||||||||||||||||||||| |||||||| ||||||||||||| | |||||| ||| |||||||||| |||||||||| ||||||||||||||||
T
8539239
gatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcacgg-aaacactataatattgtatctcttgtgtg
8539337
T
Q
331
tgtgagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttcca
430
Q
||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||
T
8539338
tgtaagagagtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccctcggtattagagggttttcca
8539437
T
Q
431
cgttaaatattggtgttcannnnnnnnccgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcg
530
Q
|||||||||||| |||||| | |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
T
8539438
cgttaaatattgatgttcattttttat-tgttaccgctgcgctgcaagatccaatctcttttagaatttggaattttaatttacacttgcgttaagctcg
8539536
T
Q
531
ttgagcccaacaat
544
Q
| ||||||||||||
T
8539537
tcgagcccaacaat
8539550
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 5e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 137 - 323
Target Start/End: Original strand, 51302118 - 51302306
Alignment:
Q
137
aagcagaagtgaaaatacaaagtttctgtg--tgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg
234
Q
||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||
T
51302118
aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgg
51302217
T
Q
235
gtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc
323
Q
||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||| ||| ||||||||||||||||||||||||||||||
T
51302218
gtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc
51302306
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 460 - 543
Target Start/End: Original strand, 51302937 - 51303020
Alignment:
Q
460
gctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaacaa
543
Q
|||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |||||||||| || ||||||||
T
51302937
gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaacaa
51303020
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 51302304 - 51302344
Alignment:
Q
409
ctcggtattagagggttttccacgttaaatattggtgttca
449
Q
|||||||||||||||||||||||||||||||||||||||||
T
51302304
ctcggtattagagggttttccacgttaaatattggtgttca
51302344
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 358 - 542
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
Q
358
tattctttaatatagtggaatatttttcggagtttgtcccgtggttttttcctcggtattagagggttttccacgttaaatattggtgttcannnnnnnn
457
Q
|||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||| |||||||||||| |||||||||| ||||||
T
2100379
tattctttaatatagtggaatatttttcggagtttgccccgt---ttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttat-
2100284
T
Q
458
ccgctaccgctgcgctgcaaga-tccagtctcttttggattttggaattttaatttacacttgcgttaagctcgttgagcccaaca
542
Q
| || || || ||||||| | || | |||||| || ||||||||||||||||||||||||| ||||||||||| ||||||||||
T
2100283
-cattatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca
2100199
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
Q
317
gtatctcttgtgtgtgtgagagagtggagagaatattgtaatattcttt
365
Q
||||||||||||| ||| |||||||||||||||||||||||||||||||
T
2100771
gtatctcttgtgtatgtaagagagtggagagaatattgtaatattcttt
2100723
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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