View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0155-INSERTION-3 (Length: 535)
Name: NF0155-INSERTION-3
Description: NF0155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0155-INSERTION-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 148 - 535
Target Start/End: Complemental strand, 28014542 - 28014157
Alignment:
| Q |
148 |
attcataaaatccctggccaagtgagagcatacgccacggcccaataactttccatactttatgtaacttcgcaaatacatccttggatgaataaggctt |
247 |
Q |
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| T |
28014542 |
attcataaaatccccggccaagtgagagcatacgccactgcccaataactttccatactttctgtaacttcgcaaatacatccttggatgaataaggctt |
28014443 |
T |
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| Q |
248 |
gttccccttgtttaaaactagtctaccacgaaggttgattttgcaaacctctaaaccactaaaatatgcgtcattcgtaattttgacagacaaagtttcc |
347 |
Q |
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| T |
28014442 |
gttccctttgtttaaaactagtctaccatgaaggttgattttgcaaacctctaaacctctaaaatatgcgtcattcgtaattttgacagacaaagtttcc |
28014343 |
T |
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| Q |
348 |
ccacgaatagatggaacaagaagaggttcagaaatttttacctgcgaaccccgaagggcctgaacaaacgaaggtttatgaatgacagctggtgcagggt |
447 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
28014342 |
ccacgaatagatggaacaggaagaggttcagaaatttttacctgcgaaccccgaagggcctgaacaaacgaagatttatgaatgacagctggtgctgggt |
28014243 |
T |
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| Q |
448 |
tgggaccgcaacagttgcactcgacaccggtgaaacggctgcaacaatagaagcagacgtttgttgtcacggtttactgaaggcggga |
535 |
Q |
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| T |
28014242 |
tgggaccgcaacagttgcactcggcaccggtgaaacggctgcaacaacagaagcagacg-ttgttgtcgcgg-ttactgaaggcggga |
28014157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 28014109 - 28013984
Alignment:
| Q |
1 |
aagttgatgtgaattgaaccaaaagaattacaagcaaggaaacccttcaatagaccaatggaaaaatccaccaaacctatgaatctaattggccaaaagc |
100 |
Q |
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| T |
28014109 |
aagttgatgtgaatcgaaccaaaagaattgcaagcaaggaaacccttcaatagaccaatggaaaaatccaccaaacctgtgaatctaattggccaaaagc |
28014010 |
T |
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| Q |
101 |
ttgatcagtgcaaagtggaaactttg |
126 |
Q |
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| T |
28014009 |
ttgatcagtgcaaagtggaaactttg |
28013984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 167 - 505
Target Start/End: Original strand, 15236227 - 15236565
Alignment:
| Q |
167 |
aagtgagagcatacgccacggcccaataactttccatactttatgtaacttcgcaaatacatccttggatgaataaggcttgttccccttgtttaaaact |
266 |
Q |
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| T |
15236227 |
aagtgagagcatatgccacttcccattaacattccatactttttgtaacttcgcagatatatccttggatgaataaggcttgtcccctttgtttaaaact |
15236326 |
T |
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| Q |
267 |
agtctaccacgaaggttgattttgcaaacctctaaaccactaaaatatgcgtcattcgtaattttgacagacaaagtttccccacgaatagatggaacaa |
366 |
Q |
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| T |
15236327 |
agtctacaacgaagattgattttgcaagcctctaaacctctaaaatatacttcattcgtaattttgatagacaaag-ttccccacaaacagatggaacag |
15236425 |
T |
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| Q |
367 |
gaagaggttcagaaatttttacctgcgaaccccgaagggcctgaacaaacgaaggtttatgaatgacagctggtgc-agggttgggaccgcaacagttgc |
465 |
Q |
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| T |
15236426 |
gaagaggttcataaatttgtacttgtaaacctcggagggcctgaacaaacgaaggtttctgaatggcagatggtgcaagagttgggaccgcagcagttgc |
15236525 |
T |
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| Q |
466 |
actcgacaccggtgaaacggctgcaacaatagaagcagac |
505 |
Q |
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| T |
15236526 |
actcggcaccggagaaacggccgcaacaacagaggcagac |
15236565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 304
Target Start/End: Complemental strand, 21805289 - 21805148
Alignment:
| Q |
164 |
gccaagtgagagcatacgccacggcccaataactttccatactttatgtaacttcgcaaatacatccttggatgaataaggcttgttccccttgtttaaa |
263 |
Q |
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|||||||||||||| ||||||| ||||| |||||||||| ||||||| ||| ||| ||| || | ||| | || |||||||||||||| ||||||| | |
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| T |
21805289 |
gccaagtgagagcagacgccactgcccactaactttccaaactttatctaatttctcaattatgtgcttagtagagtaaggcttgttccctttgtttata |
21805190 |
T |
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| Q |
264 |
actagtctaccac-gaaggttgattttgcaaacctctaaacc |
304 |
Q |
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| T |
21805189 |
attagtctacccctgaaggttgcttatacaagcctctaaacc |
21805148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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