View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0155-INSERTION-4 (Length: 423)

Name: NF0155-INSERTION-4
Description: NF0155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0155-INSERTION-4
NF0155-INSERTION-4
[»] chr1 (2 HSPs)
chr1 (146-423)||(45122936-45123213)
chr1 (1-152)||(45122789-45122940)
[»] chr5 (2 HSPs)
chr5 (260-309)||(34980546-34980595)
chr5 (236-308)||(15549684-15549756)
[»] chr7 (1 HSPs)
chr7 (154-215)||(35397425-35397486)
[»] chr2 (1 HSPs)
chr2 (224-280)||(12467149-12467205)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 146 - 423
Target Start/End: Complemental strand, 45123213 - 45122936
Alignment:
Q  146 aaattcatatatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatataagtatcactttgtttgttttgcacttcaag 245  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  45123213 aaattcagatatatacttaaaatatttctgattgatgtatcttgaaatacagaaatcgagcttatatataggtatcactttgtttgtcttgcacttcaag 45123114  T
Q  246 aaacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttgttcttcttgcaaagatcacgaaacaaccttgcttat 345  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||    
T  45123113 aaacaatattgtcacctacaagacttgtcaagcaataaagtaaacaagtggaggaatcatcttgttcttcttacaaagatcacgaaacaaccttgtttat 45123014  T
Q  346 cttgttctacctcttcttttataatttaagtagttaatgtaggacttctccaacatgtattttttcagccaacaacaa 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45123013 cttgttctacctcttcttttataatttaagtagttaatgtaggacttctccaacatgtattttttcagtcaacaacaa 45122936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 45122940 - 45122789
Alignment:
Q  1 aacaacagattgaaattttcatattcctagagataaaattttgagcttactaccaaatcggagatcattttcgttgccaaaacattatactagtaacaaa 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45122940 aacaacaaattgaaattttcatattcctagagataaaattttgagcttactaccaaatcggagatcattttcgttgccaaaacattatactagtaccaaa 45122841  T
Q  101 cactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattca 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45122840 cactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattca 45122789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 34980595 - 34980546
Alignment:
Q  260 cctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttg 309  Q
    ||||||||||||| ||||||| |||||||| ||||| |||||||||||||    
T  34980595 cctacaagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttg 34980546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 15549684 - 15549756
Alignment:
Q  236 gcacttcaagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggaggaatcacctt 308  Q
    |||||||||||||||| |||||  ||||||| |||||||| |||| |||| ||| ||||| | ||| ||||||    
T  15549684 gcacttcaagaaacaacattgtggcctacaatacttgtcatgcaagaaaggaaacaagtgaatgaaccacctt 15549756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 35397425 - 35397486
Alignment:
Q  154 atatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatata 215  Q
    ||||| ||||||||| |||||||||||||||||||  |||| |||||  ||| |||||||||    
T  35397425 atataaacttaaaatgtttctgactgatgcatcttataataaagaaagagagtttatatata 35397486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 12467149 - 12467205
Alignment:
Q  224 tttgtttgttttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaa 280  Q
    ||||||||| ||||||||||||||||||  ||||  ||||||| |||| ||||||||    
T  12467149 tttgtttgtcttgcacttcaagaaacaagcttgtggcctacaaaacttatcaagcaa 12467205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 984 times since January 2019
Visitors: 3619