View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0155-INSERTION-8 (Length: 304)
Name: NF0155-INSERTION-8
Description: NF0155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0155-INSERTION-8 |
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| [»] chr8 (6 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 170 - 304
Target Start/End: Complemental strand, 8962381 - 8962247
Alignment:
| Q |
170 |
caattgcagctattgtgtcagatgaaagtgcttttccatttgttcccggccacaatgccttgtacactgctactctagataacggagctattcctcttgt |
269 |
Q |
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| T |
8962381 |
caattgcagctattgtgtcagatgaaagtgcttttccatttgttcccggccacaatgccttgtacactgctactctagataacggggctattcctcttgc |
8962282 |
T |
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| Q |
270 |
tgttccatttgcataaccgaagaatgatgcaccat |
304 |
Q |
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| T |
8962281 |
tgttccatttgcataaccgaagaatgatgcaccat |
8962247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 8962235 - 8962153
Alignment:
| Q |
5 |
cccgctgccgttgttgaagtgtgggttccatgaccatctgtgtcacgtgtagagttcactgttgttgtatcaatggtggaatt |
87 |
Q |
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| T |
8962235 |
cccgctaccgttgttgaagtgtgggttccatgaccatctgtgtcacgtgtagagttcactgttgttgtatcaatggtggaatt |
8962153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8946854 - 8946932
Alignment:
| Q |
1 |
atttcccgctgccgttgttgaagtgtgggttccatgaccatctgtgtcacgtgtagagttcactgttgttgtatcaatg |
79 |
Q |
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| T |
8946854 |
atttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtattaatg |
8946932 |
T |
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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 8973725 - 8973649
Alignment:
| Q |
228 |
cttgtacactgctactctagataacggagctattcctcttgttgttccatttgcataaccgaagaatgatgcaccat |
304 |
Q |
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| T |
8973725 |
cttgtacatagctactctagacaatgtagctattcctcttgctgttccgtttgcataaccaaagaatgatgcaccat |
8973649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 8973634 - 8973580
Alignment:
| Q |
8 |
gctgccgttgttgaagtgtgggttccatgaccatctgtgtcacgtgtagagttca |
62 |
Q |
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| T |
8973634 |
gctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttca |
8973580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 8946783 - 8946846
Alignment:
| Q |
241 |
actctagataacggagctattcctcttgttgttccatttgcataaccgaagaatgatgcaccat |
304 |
Q |
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| T |
8946783 |
actctagacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccat |
8946846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 41103372 - 41103281
Alignment:
| Q |
84 |
aattgcaagaagcactggaaacttttcgagattttcgaaacctttatggttaccctgaggttaatttattgaatcagcttattgtgcaattg |
175 |
Q |
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| T |
41103372 |
aattgcaagaagcattggaaacttttcgtgattttcgaaacctttatggttaccctgagattaatttattgaatcagcttattgtgcaattg |
41103281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 34963606 - 34963663
Alignment:
| Q |
3 |
ttcccgctgccgttgttgaagtgtgggttccatgaccatctgtgtcacgtgtagagtt |
60 |
Q |
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| T |
34963606 |
ttccagctgctgttgttgaagtatgagttccatgaccttctgtgtcacgtgtggagtt |
34963663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 304
Target Start/End: Original strand, 21687854 - 21687985
Alignment:
| Q |
170 |
caattgcagctattgtgtcagatgaaagtgcttttccatttgttcccggccacaatgccttgtacactgctactctagataacggagctattcctcttgt |
269 |
Q |
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| T |
21687854 |
caattgcagctattatatcagatgaaagtgcgtctccatcttttccc---cacgcagtcttgtatatagctactctagacgatgaagctatacctcttgc |
21687950 |
T |
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| Q |
270 |
tgttccatttgcataaccgaagaatgatgcaccat |
304 |
Q |
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| T |
21687951 |
tgttccatttgcatagccaaagaaagatgcaccat |
21687985 |
T |
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