View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0155-INSERTION-9 (Length: 233)

Name: NF0155-INSERTION-9
Description: NF0155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0155-INSERTION-9
NF0155-INSERTION-9
[»] chr7 (13 HSPs)
chr7 (56-233)||(45585012-45585189)
chr7 (1-59)||(45585187-45585245)
chr7 (7-59)||(33860169-33860221)
chr7 (7-59)||(34146099-34146151)
chr7 (7-59)||(34181284-34181336)
chr7 (11-59)||(35083654-35083702)
chr7 (14-60)||(42796519-42796565)
chr7 (11-60)||(43027215-43027264)
chr7 (11-59)||(35073575-35073623)
chr7 (11-59)||(35084626-35084674)
chr7 (11-59)||(35099927-35099975)
chr7 (7-59)||(36745134-36745186)
chr7 (198-231)||(43027275-43027308)
[»] chr6 (4 HSPs)
chr6 (11-59)||(25568745-25568793)
chr6 (11-59)||(26002613-26002661)
chr6 (11-59)||(25563130-25563178)
chr6 (11-59)||(26102642-26102690)
[»] chr5 (1 HSPs)
chr5 (11-59)||(9663548-9663596)
[»] scaffold0176 (2 HSPs)
scaffold0176 (15-59)||(23837-23881)
scaffold0176 (198-233)||(23789-23824)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 45585012 - 45585189
Alignment:
Q  56 aattgcattatttgttgtctatgattctccccgagtctgttttcaatccgaggtagggagcataatttttctttatagacacgttggtaaatccgtgcac 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45585012 aattgcattatttgttgtctatgattctccccgagtctgttttcaatccgaggtagggagcataatttttctttatagacacgttggtaaatccgtgcac 45585111  T
Q  156 acgtctttgcacaacttagcaattcctttggagatcaatcaatatgttcattacctaatggaaattttactcggatgg 233  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45585112 acgtctttgcacaacttagcaatttctttggagatcaatcaatatgttcattacctaatggaaattttactcggatgg 45585189  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 45585187 - 45585245
Alignment:
Q  1 tggaacgatcatggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45585187 tggaacgatcatggcacctttacagtggagcataaattgatccaatcttgtggcaaatt 45585245  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 33860221 - 33860169
Alignment:
Q  7 gatcatggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33860221 gatcatggcacctttataatggagcataaattgatccaatcttgtggcaaatt 33860169  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 34146151 - 34146099
Alignment:
Q  7 gatcatggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34146151 gatcatggcacctttataatggagcataaattgatccaatcttgtggcaaatt 34146099  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 34181284 - 34181336
Alignment:
Q  7 gatcatggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34181284 gatcatggcacctttataatggagcataaattgatccaatcttgtggcaaatt 34181336  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 35083654 - 35083702
Alignment:
Q  11 atggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35083654 atggcacctttataatggagcataaattgatccaatcttgtggcaaatt 35083702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 42796565 - 42796519
Alignment:
Q  14 gcacctttacaatggagcataaattgatccaatcttgtggcaaattg 60  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  42796565 gcacctttataatggagcataaattgatccaatcttgtggcaaattg 42796519  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 43027264 - 43027215
Alignment:
Q  11 atggcacctttacaatggagcataaattgatccaatcttgtggcaaattg 60  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  43027264 atggcacctttataatggagcataaattgatcgaatcctgtggcaaattg 43027215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 35073575 - 35073623
Alignment:
Q  11 atggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  35073575 atgggacctttataatggagcataaattgatccaatcttgtggtaaatt 35073623  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 35084626 - 35084674
Alignment:
Q  11 atggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  35084626 atgggacctttataatggagcataaattgatccaatcttgtggtaaatt 35084674  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 35099927 - 35099975
Alignment:
Q  11 atggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  35099927 atgggacctttataatggagcataaattgatccaatcttgtggtaaatt 35099975  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 36745134 - 36745186
Alignment:
Q  7 gatcatggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    ||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||    
T  36745134 gatcatgtcacctttataatggagcacaaattgatccaatctggtggcaaatt 36745186  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 43027308 - 43027275
Alignment:
Q  198 tatgttcattacctaatggaaattttactcggat 231  Q
    ||||||||||||||||||||||||||||||||||    
T  43027308 tatgttcattacctaatggaaattttactcggat 43027275  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 25568793 - 25568745
Alignment:
Q  11 atggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25568793 atggcacctttataatggagcataaattgatccaatcttgtggcaaatt 25568745  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 26002661 - 26002613
Alignment:
Q  11 atggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26002661 atggcacctttataatggagcataaattgatccaatcttgtggcaaatt 26002613  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 25563178 - 25563130
Alignment:
Q  11 atggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  25563178 atggcacctttataatgcagcataaattgatccaatcttgtggaaaatt 25563130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 26102690 - 26102642
Alignment:
Q  11 atggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  26102690 atggcacctttataatgcagcataaattgatccaatcttgtggaaaatt 26102642  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 9663596 - 9663548
Alignment:
Q  11 atggcacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  9663596 atggcacctttataatggagcataaattgatccaatcttgtgacaaatt 9663548  T

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Target: scaffold0176 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 23837 - 23881
Alignment:
Q  15 cacctttacaatggagcataaattgatccaatcttgtggcaaatt 59  Q
    |||||||| |||||||||||||||||||||| |||||||||||||    
T  23837 cacctttataatggagcataaattgatccaaacttgtggcaaatt 23881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 23789 - 23824
Alignment:
Q  198 tatgttcattacctaatggaaattttactcggatgg 233  Q
    ||||||||||||||||||||||||||||||| ||||    
T  23789 tatgttcattacctaatggaaattttactcgaatgg 23824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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