View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0155_low_1 (Length: 447)

Name: NF0155_low_1
Description: NF0155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0155_low_1
NF0155_low_1
[»] chr3 (4 HSPs)
chr3 (58-393)||(31503697-31504032)
chr3 (58-393)||(34498700-34499035)
chr3 (58-393)||(27610232-27610560)
chr3 (193-260)||(45418315-45418382)
[»] chr1 (2 HSPs)
chr1 (90-274)||(10289991-10290175)
chr1 (90-134)||(37123929-37123973)
[»] chr4 (3 HSPs)
chr4 (188-274)||(40554324-40554410)
chr4 (171-261)||(21039972-21040062)
chr4 (94-146)||(38596036-38596088)
[»] chr7 (2 HSPs)
chr7 (197-256)||(12509402-12509461)
chr7 (197-258)||(12541599-12541660)
[»] chr5 (1 HSPs)
chr5 (118-152)||(36612250-36612284)
[»] chr6 (1 HSPs)
chr6 (89-141)||(24936823-24936875)


Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 58 - 393
Target Start/End: Original strand, 31503697 - 31504032
Alignment:
Q  58 ctttacatctttggacatataatgatataatccagtgttgtcaaatatcggcgatggcggcgccatggcagatatcggtggcggtttttgggctcactgt 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31503697 ctttacatctttggacatataatgatataatccagtgttgtcaaatatcggcgatggcggcgccatggcggatatcggtggcggtttttgggctcactgt 31503796  T
Q  158 agtggtgaatagtggccgatattgctggtgtttccgccataatccgctatgacagcgccacaaggcggccggtatggatggatttcggctctccaccatg 257  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||     
T  31503797 agtggtgaatattggccgatattgctggtgtttccgccataatccgctatgacggcgccacaaagcggccggtatggatggatttcggctctccaccatc 31503896  T
Q  258 gaccgccattgacaacaatgatgtaatcgtcatgtaatggatagatatcatgaaatgactacaacagagatgaaatttttactgagcactgatacggaat 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31503897 gaccgccattgacaacaatgatgtaatcgtcatgtaatggatagatatcatgaaatgactacaacagagatgaaatttttactgagcactgatatggaat 31503996  T
Q  358 ccattggatattaagtcaacatttttgtgtctcaaa 393  Q
    ||||||||||||||||||||||||||||||||||||    
T  31503997 ccattggatattaagtcaacatttttgtgtctcaaa 31504032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 58 - 393
Target Start/End: Complemental strand, 34499035 - 34498700
Alignment:
Q  58 ctttacatctttggacatataatgatataatccagtgttgtcaaatatcggcgatggcggcgccatggcagatatcggtggcggtttttgggctcactgt 157  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||| || |||||||||||||||||||||||| | |     
T  34499035 ctttacatctttggacatataatgatataatccagtgttatcgaatatcggcgatggtggctccatgacaaatatcggtggcggtttttgggctcgccgc 34498936  T
Q  158 agtggtgaatagtggccgatattgctggtgtttccgccataatccgctatgacagcgccacaaggcggccggtatggatggatttcggctctccaccatg 257  Q
    | |||| ||||  || ||||||||| ||| |||||  |||||||| ||||||  |||||| || |||| ||||||||| |||||||||||||||||||||    
T  34498935 aatggtaaatatcggtcgatattgcaggtctttccagcataatcctctatgatggcgccaaaaagcggacggtatggagggatttcggctctccaccatg 34498836  T
Q  258 gaccgccattgacaacaatgatgtaatcgtcatgtaatggatagatatcatgaaatgactacaacagagatgaaatttttactgagcactgatacggaat 357  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  34498835 gaccgccatcgacaacaatgatgaaatcgtcatgtaatagatagatatcatgaaatgactactgcagagatgaaatttttactgagcaccgatacggaat 34498736  T
Q  358 ccattggatattaagtcaacatttttgtgtctcaaa 393  Q
    ||||||||||||||||||||||||||||||||||||    
T  34498735 ccattggatattaagtcaacatttttgtgtctcaaa 34498700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 58 - 393
Target Start/End: Complemental strand, 27610560 - 27610232
Alignment:
Q  58 ctttacatctttggacatataatgatataatccagtgttgtcaaatatcggcgatggcggcgccatggcagatatcggtggcggtttttgggctcactgt 157  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||| || |||||||||||||||||||||||| | |     
T  27610560 ctttacatctttggacatataatgatataatccagtgttatcgaatatcggcgatggtggctccatgacaaatatcggtggcggtttttgggctcgccgc 27610461  T
Q  158 agtggtgaatagtggccgatattgctggtgtttccgccataatccgctatgacagcgccacaaggcggccggtatggatggatttcggctctccaccatg 257  Q
    | |||| ||||  || | ||||||| ||| |||||  |||||||| ||||||  |||||| || |||||||||||||| ||||       ||||||||||    
T  27610460 aatggtaaatatcggtcaatattgcaggtctttccagcataatcctctatgatggcgccaaaaagcggccggtatggagggat-------ctccaccatg 27610368  T
Q  258 gaccgccattgacaacaatgatgtaatcgtcatgtaatggatagatatcatgaaatgactacaacagagatgaaatttttactgagcactgatacggaat 357  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  27610367 gaccgccatcgacaacaatgatgaaatcgtcatgtaatagatagatatcatgaaatgactactgcagagatgaaatttttactgagcaccgatacggaat 27610268  T
Q  358 ccattggatattaagtcaacatttttgtgtctcaaa 393  Q
    ||||||||||||||||||||||||||||||||||||    
T  27610267 ccattggatattaagtcaacatttttgtgtctcaaa 27610232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 45418382 - 45418315
Alignment:
Q  193 gccataatccgctatgacagcgccacaaggcggccggtatggatggatttcggctctccaccatggac 260  Q
    ||||||||||| |  ||||||||||||| || ||||||||||  ||||||||||||||| ||||||||    
T  45418382 gccataatccgattcgacagcgccacaaagcagccggtatggcaggatttcggctctccgccatggac 45418315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 274
Target Start/End: Original strand, 10289991 - 10290175
Alignment:
Q  90 cagtgttgtcaaatatcggcgatggcggcgccatggcagatatcggtggcggtttttgggctcactgtagtggtgaatagtggccgatattgctggtgtt 189  Q
    ||||||||| |||| ||| | || | |||||||||||||||||||||||||| |||||| ||| ||  |  ||| | |   ||||||||| |  ||  ||    
T  10289991 cagtgttgttaaatctcgaccatagtggcgccatggcagatatcggtggcgggttttggcctctctacaacggtcagtttcggccgatatggtgggattt 10290090  T
Q  190 tccgccataatccgctatgacagcgccacaaggcggccggtatggatggatttcggctctccaccatggaccgccattgacaaca 274  Q
    |||||||||||||| |||||| ||||||||  |||||| ||||||  |||||| |||||||| |||||| | |||||||||||||    
T  10290091 tccgccataatccgatatgacggcgccacatagcggccagtatggtgggattttggctctccgccatggtctgccattgacaaca 10290175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 37123929 - 37123973
Alignment:
Q  90 cagtgttgtcaaatatcggcgatggcggcgccatggcagatatcg 134  Q
    |||||||||||||||||||| |||| ||| ||||||| |||||||    
T  37123929 cagtgttgtcaaatatcggccatggtggcaccatggcggatatcg 37123973  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 40554410 - 40554324
Alignment:
Q  188 tttccgccataatccgctatgacagcgccacaaggcggccggtatggatggatttcggctctccaccatggaccgccattgacaaca 274  Q
    |||||||||| ||||| |||||| ||||||||| |||||||||||||  |||||| |||||||| | |||||||||||| |||||||    
T  40554410 tttccgccatgatccgatatgacggcgccacaaagcggccggtatggccggattttggctctccgcaatggaccgccatagacaaca 40554324  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 21040062 - 21039972
Alignment:
Q  171 ggccgatattgctggtgtttccgccataatccgctatgacagcgccacaaggcggccggtatggatggatttcggctctccaccatggacc 261  Q
    |||||||||||| | | |||  |||| |||||| |||||| || |||||| |||||||||||||  |||||| |||||||| |||||||||    
T  21040062 ggccgatattgcggttttttttgccacaatccgttatgacggcaccacaaagcggccggtatggcgggattttggctctccgccatggacc 21039972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 38596036 - 38596088
Alignment:
Q  94 gttgtcaaatatcggcgatggcggcgccatggcagatatcggtggcggttttt 146  Q
    |||||||||||||||| ||||||| |||||||  |||| |||||||| |||||    
T  38596036 gttgtcaaatatcggccatggcggtgccatggtggataccggtggcgattttt 38596088  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 12509402 - 12509461
Alignment:
Q  197 taatccgctatgacagcgccacaaggcggccggtatggatggatttcggctctccaccat 256  Q
    |||||| |||||||||| |||||| |||||||||||||  |||||| |||||||||||||    
T  12509402 taatcctctatgacagcaccacaaagcggccggtatggtgggattttggctctccaccat 12509461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 12541599 - 12541660
Alignment:
Q  197 taatccgctatgacagcgccacaaggcggccggtatggatggatttcggctctccaccatgg 258  Q
    |||||| |||||||||| |||||| |||||||||||||  |||||| |||||||| ||||||    
T  12541599 taatcctctatgacagcaccacaaagcggccggtatggtgggattttggctctccgccatgg 12541660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 36612250 - 36612284
Alignment:
Q  118 cgccatggcagatatcggtggcggtttttgggctc 152  Q
    |||||||||||||||| ||||||||||||||||||    
T  36612250 cgccatggcagatatctgtggcggtttttgggctc 36612284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 24936823 - 24936875
Alignment:
Q  89 ccagtgttgtcaaatatcggcgatggcggcgccatggcagatatcggtggcgg 141  Q
    ||||||||||  ||||||||| |||| ||||||||||| |||||| |||||||    
T  24936823 ccagtgttgttgaatatcggccatggaggcgccatggcggatatcagtggcgg 24936875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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