View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0155_low_3 (Length: 236)
Name: NF0155_low_3
Description: NF0155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0155_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 29100966 - 29100772
Alignment:
| Q |
18 |
ataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaac |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29100966 |
ataacacagctgtataatgaaggtgcagggcacggaaccagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaac |
29100867 |
T |
|
| Q |
118 |
aaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgatatattaatatctgtcctccttccatattaagaaagaatcta |
212 |
Q |
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| T |
29100866 |
aaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgatatattaatatctggcctcctaccatactaagaaaggatcta |
29100772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 29063030 - 29062836
Alignment:
| Q |
18 |
ataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaac |
117 |
Q |
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|||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29063030 |
ataacacagctgtataatgaaggtgcagggcacgaaaccagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaac |
29062931 |
T |
|
| Q |
118 |
aaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgatatattaatatctgtcctccttccatattaagaaagaatcta |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||| |||||||| ||||| |
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| T |
29062930 |
aaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgatatattaatatatggcctcctaccatactaagaaaggatcta |
29062836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 29117884 - 29117690
Alignment:
| Q |
18 |
ataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaac |
117 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29117884 |
ataacacagctgtataatgaaggtgcagggcacgaaaccagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaac |
29117785 |
T |
|
| Q |
118 |
aaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgatatattaatatctgtcctccttccatattaagaaagaatcta |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||| |||||||| ||||| |
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| T |
29117784 |
aaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgatatattaatatgtggcctcctaccatactaagaaaggatcta |
29117690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 4259860 - 4259802
Alignment:
| Q |
81 |
aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat |
139 |
Q |
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||||| ||||||||||||||||||| |||||||||| |||| || ||||||||||||| |
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| T |
4259860 |
aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat |
4259802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 4263482 - 4263424
Alignment:
| Q |
81 |
aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat |
139 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||| |||| || ||||||||||||| |
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| T |
4263482 |
aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat |
4263424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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