View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0156-INSERTION1 (Length: 591)
Name: NF0156-INSERTION1
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156-INSERTION1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-135; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 15169016 - 15169363
Alignment:
| Q |
7 |
atcagcagcataaagattacgttcaatggaaggcactagttcatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgattaaca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15169016 |
atcagcagcataaagattacgttcaatggaaggcactagtttatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgatttaca |
15169115 |
T |
|
| Q |
107 |
atggtaaatgtaagtgctctcaaccaagttgtacctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagaga |
206 |
Q |
| |
|
|| |||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||| |
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|
| T |
15169116 |
attgtaaatgtaagtgctctcaaccaagtggtgcctgattttggtaagcttgcaacaacaatatcactatctttggcttgaaaatgattttgaaaagaga |
15169215 |
T |
|
| Q |
207 |
ttataggttggatcatatttgatggacaccaaaaacattgaaacaaatataaattttgggacaatccccacccattttctttaggaagtgagaggatcac |
306 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
15169216 |
ttataggttggatcaaatttgatggacaccaaaaacattga---aaatataaattttgggacaatatccatgcattttctttaggaagtgagaggatcac |
15169312 |
T |
|
| Q |
307 |
ctgcttacagtcttgttggcttgtttcttgtccatcccttgattggtcttc |
357 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||| ||||||| ||||| |
|
|
| T |
15169313 |
ctgcttattgtcttgttggttttcttcttgtccatcctttgattgctcttc |
15169363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 15076659 - 15076372
Alignment:
| Q |
7 |
atcagcagcataaagattacgttcaatggaaggcactagttcatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgattaaca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15076659 |
atcagcagcataaagattacgttcaatggaaggcactagttcatgtataatggatttaagtaatggatgattctcaaaagagtattgattgcgattaaca |
15076560 |
T |
|
| Q |
107 |
atggtaaatgtaagtgctctcaaccaagttgtacctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagaga |
206 |
Q |
| |
|
|| |||||||||| ||||||||||||||| || |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15076559 |
attgtaaatgtaaatgctctcaaccaagtggtgcctgattttggtaagctagcaacaacaatatcattgtgtttggcttggaaattgttttgaaaagaga |
15076460 |
T |
|
| Q |
207 |
ttataggttggatcatatttgatggacaccaaaaacattgaaacaaatataaattttgggacaatccccacccattttctttaggaagtga |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076459 |
ttataggttggatcatatttgatggacaccaaaaacattga---aaatatacattttgggacaatccccacccattttctttaggaagtga |
15076372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 7 - 351
Target Start/End: Original strand, 15171854 - 15172178
Alignment:
| Q |
7 |
atcagcagcataaagattacgttcaatggaaggcactagttcatgtataatggatttaagtaatggatgattctcaaaggagtattgattgcgattaaca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| |
|
|
| T |
15171854 |
atcagcagcataaagattacgttcaatggaaggcactagtttatgtataatggatttaagtaatgaatgattctcaaaagagtattgattgcgatttaca |
15171953 |
T |
|
| Q |
107 |
atggtaaatgtaagtgctctcaaccaagttgtacctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagaga |
206 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15171954 |
attgtaaatgtaagtgctctcaaccaagttgtgcctgattttggta-----------------tcattgtgtttggcttggaaattgttttgaaaagaga |
15172036 |
T |
|
| Q |
207 |
ttataggttggatcatatttgatggacaccaaaaacattgaaacaaatataaattttgggacaatccccacccattttctttaggaagtgagaggatcac |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
15172037 |
ttataggttggatcatatttgatggacaccaaaaacattga---aaatatacattttgggacaatatccatgcattttctttaggaagtgagaggatcac |
15172133 |
T |
|
| Q |
307 |
ctgcttacagtcttgttggcttgtttcttgtccatcccttgattg |
351 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
15172134 |
ctgcttgttgtcttgttggcttgcttcttgtccatcctttgattg |
15172178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 372 - 568
Target Start/End: Complemental strand, 15052104 - 15051906
Alignment:
| Q |
372 |
gaaggagaacacaacactagttgcaattttcgttagcttgaaaattatgttcataaccagctattatttatagcacgataccagtattcattcaataatt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15052104 |
gaaggagaacacaacactagttgcaattttcgttatcttgaaaattgtgttaataaccagctattatttatagcacgataccagtattcattcaataatt |
15052005 |
T |
|
| Q |
472 |
ttaactagattaggattttatttaatactttatgaaatggaaccttgtgatctagtggtattaa--aaaatgttataccagctgggatagatatataat |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
15052004 |
ttaactagattaggattttatttaatactttatgaaatggaaccttgtgatctaatggtattaaaaaaaatgttataccagctgggagagatatataat |
15051906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 327 - 569
Target Start/End: Complemental strand, 15066371 - 15066120
Alignment:
| Q |
327 |
ttgtttcttgtccatcccttgattggtcttctttcatatgtgtgaga-----------------aggagaacacaacactagttgcaattttcgttagct |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15066371 |
ttgtttcttgtccatcccttgattggtcttctttcatatttgtgagatctgttgaagccattgaaggagaacacaacactagttgcaattttcgttagct |
15066272 |
T |
|
| Q |
410 |
tgaaaattatgttcataaccagctattatttatagcacgataccagtattcattcaataattttaactagattaggattttatttaatactttatgaaat |
509 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||||||||||| ||||| |
|
|
| T |
15066271 |
tgaaaattgtgttaataaccagctattatttatagcacgatgccagtactcattcaataattttaattagtttaggattttatttaa--------gaaat |
15066180 |
T |
|
| Q |
510 |
ggaaccttgtgatctagtggtattaaaaaatgttataccagctgggatagatatataatc |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15066179 |
ggaaccttgtgatctagtggtattaaaaaatgttataccagctgggatagatatataatc |
15066120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 36 - 313
Target Start/End: Original strand, 4506773 - 4507053
Alignment:
| Q |
36 |
aaggcactagttcatgtataatggatttaagtaatggatgattctcaaagga---gtattgattgcgattaacaatggtaaatgtaagtgctctcaacca |
132 |
Q |
| |
|
||||||||||||||||| | || |||||||||||||||||| || ||||| | | |||| ||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
4506773 |
aaggcactagttcatgtgaattgaatttaagtaatggatgatcttctaaggaagagaaatgatgacgattaacaatggcaaatgtgagtgctttcaacca |
4506872 |
T |
|
| Q |
133 |
agttgtacctgatttaggtaagcttgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatgga |
232 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| | |||||||||| |
|
|
| T |
4506873 |
agttgtgccggattttggtaagctagcaacaacaatatcattgtctttggcttgaaaatgattttgaaaagagtttataggttggattaaatttgatgga |
4506972 |
T |
|
| Q |
233 |
caccaaaaacattgaaacaaatataaattttgggacaatccccacccattttctttaggaagtgagaggatcacctgctta |
313 |
Q |
| |
|
|||||||||| |||||| ||||| ||| ||||||| |||||||| ||| || |||||||||||||||| | ||||||| |
|
|
| T |
4506973 |
caccaaaaaccttgaaaaaaataaaaaatttgggatgccccccacccttttactctaggaagtgagaggattaactgctta |
4507053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 327 - 479
Target Start/End: Complemental strand, 15076324 - 15076155
Alignment:
| Q |
327 |
ttgtttcttgtccatcccttgattggtcttctttcatatgtgtgaga-----------------aggagaacacaacactagttgcaattttcgttagct |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076324 |
ttgtttcttgtccatcccttgattggtcttctttcatatttgtgagatctgttgaagccattgaaggagaacacaacactagttgcaattttcgttagct |
15076225 |
T |
|
| Q |
410 |
tgaaaattatgttcataaccagctattatttatagcacgataccagtattcattcaataattttaactag |
479 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15076224 |
tgaaaattgtgttaataaccagctattatttatagcatgataccagtattcattcaataattttaactag |
15076155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 158 - 284
Target Start/End: Complemental strand, 15164456 - 15164330
Alignment:
| Q |
158 |
gcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaaacattgaaacaaatata |
257 |
Q |
| |
|
|||||||||| | |||||||||| ||||| |||| ||||||| |||| ||||||||||||| | ||||||| ||||||||||| |||||| | ||||| |
|
|
| T |
15164456 |
gcaacaacaacagcattgtctttagcttgaaaatcattttgaacagagtttataggttggattaaatttgatcaacaccaaaaaccttgaaaaagatata |
15164357 |
T |
|
| Q |
258 |
aattttgggacaatccccacccatttt |
284 |
Q |
| |
|
||| ||| |||| || ||||||||||| |
|
|
| T |
15164356 |
aatattgagacattcaccacccatttt |
15164330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 15076064 - 15076022
Alignment:
| Q |
527 |
tggtattaaaaaatgttataccagctgggatagatatataatc |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076064 |
tggtattaaaaaatgttataccagctgggatagatatataatc |
15076022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 327 - 373
Target Start/End: Original strand, 15215072 - 15215118
Alignment:
| Q |
327 |
ttgtttcttgtccatcccttgattggtcttctttcatatgtgtgaga |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15215072 |
ttgtttcttgtccatcccttgattggtcttctttcatatttgtgaga |
15215118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 482
Target Start/End: Complemental strand, 13033001 - 13032958
Alignment:
| Q |
439 |
ttatagcacgataccagtattcattcaataattttaactagatt |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13033001 |
ttatagcacgataccagtattcattcaataattttaattagatt |
13032958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 15052163 - 15052120
Alignment:
| Q |
330 |
tttcttgtccatcccttgattggtcttctttcatatgtgtgaga |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15052163 |
tttcttgtccatcccttgattggtcttctttcatatgtttgaga |
15052120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 514
Target Start/End: Original strand, 15215212 - 15215249
Alignment:
| Q |
477 |
tagattaggattttatttaatactttatgaaatggaac |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15215212 |
tagattaggattttatttaatactttatgaaatggaac |
15215249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 13033225 - 13033142
Alignment:
| Q |
157 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaa |
240 |
Q |
| |
|
||||||||||||||||||||||||||| || || || |||||||||| | | | || |||||| | || ||||||||||||||| |
|
|
| T |
13033225 |
tgcaacaacaatatcattgtctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaa |
13033142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 4507071 - 4507110
Alignment:
| Q |
316 |
gtcttgttggcttgtttcttgtccatcccttgattggtct |
355 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
4507071 |
gtcttgttggcatgcttcttgtccatcccttgattggtct |
4507110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 15066556 - 15066473
Alignment:
| Q |
157 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaa |
240 |
Q |
| |
|
|||||| ||||||||| | |||||||| || ||||| |||||||||||| | | || |||||| | | |||||||||||||||| |
|
|
| T |
15066556 |
tgcaactacaatatcactatctttggcatgaaaattattttgaaaagagttcacagattggataagagttgatggacaccaaaa |
15066473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 15214887 - 15214970
Alignment:
| Q |
157 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaa |
240 |
Q |
| |
|
|||||||||||||||| ||||||| || || ||||| |||||||||||| | | || ||| || | | |||||||||||||||| |
|
|
| T |
15214887 |
tgcaacaacaatatcactgtctttagcatgaaaattattttgaaaagagttcacagattgaataagagttgatggacaccaaaa |
15214970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 14999981 - 14999896
Alignment:
| Q |
157 |
tgcaacaacaatatcattgtctttggcttggaaattgttttgaaaagagattataggttggatcatatttgatggacaccaaaaac |
242 |
Q |
| |
|
|||||||| || |||| | ||||||| ||| ||||| ||| |||||||| ||||||||||||| | ||| |||||||||||||| |
|
|
| T |
14999981 |
tgcaacaataacatcactatctttggtttgaaaattatttcgaaaagagtttataggttggattaatattggtggacaccaaaaac |
14999896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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