View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156-INSERTION10 (Length: 198)
Name: NF0156-INSERTION10
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156-INSERTION10 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 3951306 - 3951116
Alignment:
| Q |
8 |
tgcaggacattgtatatatggaag---gtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaactgaaaactataatta |
104 |
Q |
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| T |
3951306 |
tgcaggacattatatatatggaagaaggtcacaaaaaagtttttgtcttactttaaagctctaacaatatctacaaatatagaactgaaaactataatta |
3951207 |
T |
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| Q |
105 |
catactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaattttgaaattgataagcagagtatttacagcatatatt |
195 |
Q |
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| T |
3951206 |
catactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatatt |
3951116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 4027567 - 4027646
Alignment:
| Q |
8 |
tgcaggacattgtatatatggaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatataga |
87 |
Q |
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| T |
4027567 |
tgcaggacatagaatataaggaaggtcacaaaaaggttttggtcttacttcacagctcatacaatatctacaaatataga |
4027646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 4013305 - 4013367
Alignment:
| Q |
28 |
gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact |
90 |
Q |
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| T |
4013305 |
gaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatatagaact |
4013367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 13400441 - 13400477
Alignment:
| Q |
159 |
tttgaaattgataagcagagtatttacagcatatatt |
195 |
Q |
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| T |
13400441 |
tttgaaattgataagcagagtatttacagcatatatt |
13400477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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