View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0156-INSERTION11 (Length: 721)

Name: NF0156-INSERTION11
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0156-INSERTION11
NF0156-INSERTION11
[»] chr4 (20 HSPs)
chr4 (10-721)||(30190485-30191195)
chr4 (10-277)||(55227504-55227771)
chr4 (10-268)||(30859255-30859513)
chr4 (10-255)||(54823561-54823806)
chr4 (10-264)||(18878066-18878320)
chr4 (76-265)||(4235271-4235460)
chr4 (64-265)||(13685954-13686155)
chr4 (112-269)||(16431344-16431501)
chr4 (60-269)||(16582327-16582536)
chr4 (56-269)||(14263977-14264190)
chr4 (76-269)||(20527768-20527961)
chr4 (64-265)||(37061042-37061243)
chr4 (118-264)||(54027696-54027842)
chr4 (118-264)||(27087441-27087587)
chr4 (112-264)||(28860783-28860935)
chr4 (118-264)||(27066340-27066486)
chr4 (206-261)||(4462660-4462715)
chr4 (10-71)||(19069034-19069095)
chr4 (118-175)||(27066623-27066680)
chr4 (118-175)||(27066817-27066874)
[»] chr5 (19 HSPs)
chr5 (10-272)||(22292271-22292533)
chr5 (14-286)||(28246153-28246428)
chr5 (12-288)||(21092101-21092373)
chr5 (10-269)||(18759608-18759866)
chr5 (60-271)||(2157764-2157975)
chr5 (61-269)||(19741519-19741727)
chr5 (118-265)||(36044917-36045064)
chr5 (118-271)||(19237666-19237813)
chr5 (118-264)||(29754948-29755093)
chr5 (112-269)||(16088563-16088702)
chr5 (118-261)||(5335206-5335349)
chr5 (118-170)||(40299902-40299954)
chr5 (131-264)||(13948783-13948916)
chr5 (127-255)||(27493262-27493390)
chr5 (226-270)||(32065599-32065643)
chr5 (112-179)||(34920008-34920075)
chr5 (112-237)||(26683471-26683596)
chr5 (209-262)||(29358700-29358753)
chr5 (128-261)||(29955461-29955594)
[»] chr2 (15 HSPs)
chr2 (10-277)||(16206431-16206698)
chr2 (60-271)||(36641301-36641512)
chr2 (64-265)||(11818436-11818637)
chr2 (111-269)||(2058701-2058859)
chr2 (112-269)||(23379863-23380019)
chr2 (112-192)||(11502316-11502396)
chr2 (64-269)||(23762497-23762701)
chr2 (111-269)||(44886288-44886446)
chr2 (64-269)||(23761364-23761568)
chr2 (64-269)||(23789508-23789712)
chr2 (61-237)||(27267909-27268086)
chr2 (118-265)||(11553327-11553474)
chr2 (118-249)||(14231023-14231154)
chr2 (112-269)||(20661187-20661344)
chr2 (118-255)||(33650877-33651014)
[»] chr8 (18 HSPs)
chr8 (10-272)||(14505613-14505875)
chr8 (10-272)||(15990396-15990658)
chr8 (10-286)||(1186437-1186713)
chr8 (10-272)||(37590023-37590285)
chr8 (10-255)||(19299024-19299269)
chr8 (97-269)||(17837143-17837315)
chr8 (16-261)||(27978643-27978888)
chr8 (16-261)||(28035912-28036157)
chr8 (25-265)||(34723846-34724086)
chr8 (61-269)||(14657695-14657903)
chr8 (34-272)||(35284950-35285188)
chr8 (127-232)||(4518363-4518468)
chr8 (127-269)||(953679-953821)
chr8 (64-265)||(26931852-26932055)
chr8 (118-265)||(2246714-2246861)
chr8 (127-264)||(10601103-10601240)
chr8 (118-264)||(42080464-42080610)
chr8 (143-264)||(23558677-23558798)
[»] chr1 (18 HSPs)
chr1 (10-288)||(30033474-30033752)
chr1 (112-269)||(21701462-21701619)
chr1 (60-271)||(41117131-41117342)
chr1 (63-255)||(40490017-40490209)
chr1 (118-265)||(5185265-5185412)
chr1 (118-271)||(24065213-24065366)
chr1 (111-179)||(9361760-9361828)
chr1 (111-201)||(24083368-24083458)
chr1 (94-265)||(29115387-29115558)
chr1 (131-288)||(49372331-49372487)
chr1 (61-269)||(52147698-52147906)
chr1 (112-269)||(24427485-24427641)
chr1 (112-165)||(10771211-10771264)
chr1 (205-286)||(3603493-3603574)
chr1 (205-265)||(6507904-6507964)
chr1 (112-264)||(18122716-18122870)
chr1 (164-211)||(28867727-28867774)
chr1 (118-264)||(34696097-34696243)
[»] chr7 (20 HSPs)
chr7 (10-272)||(32480107-32480369)
chr7 (10-269)||(3896357-3896616)
chr7 (64-291)||(30502452-30502677)
chr7 (10-219)||(3205170-3205379)
chr7 (112-262)||(24226203-24226353)
chr7 (23-272)||(26016433-26016682)
chr7 (36-269)||(41601351-41601584)
chr7 (14-254)||(4645956-4646196)
chr7 (61-271)||(15633172-15633382)
chr7 (60-271)||(13014950-13015161)
chr7 (25-265)||(8118792-8119032)
chr7 (112-265)||(47081645-47081798)
chr7 (111-269)||(17238662-17238820)
chr7 (98-277)||(33611014-33611193)
chr7 (112-269)||(27458132-27458289)
chr7 (118-265)||(48770112-48770259)
chr7 (118-265)||(48100733-48100880)
chr7 (206-261)||(44435540-44435595)
chr7 (118-264)||(30622490-30622636)
chr7 (156-265)||(27810574-27810683)
[»] chr3 (23 HSPs)
chr3 (10-270)||(17790044-17790304)
chr3 (10-270)||(19098486-19098746)
chr3 (10-268)||(6006025-6006283)
chr3 (10-288)||(31228130-31228408)
chr3 (10-269)||(53437428-53437686)
chr3 (34-269)||(53394751-53394985)
chr3 (10-267)||(19602910-19603167)
chr3 (10-271)||(31973390-31973651)
chr3 (10-269)||(31935132-31935391)
chr3 (112-269)||(31809156-31809313)
chr3 (60-271)||(16739417-16739628)
chr3 (10-234)||(31660997-31661221)
chr3 (25-265)||(8565921-8566161)
chr3 (112-264)||(29372946-29373098)
chr3 (118-270)||(49499410-49499562)
chr3 (127-264)||(12370779-12370916)
chr3 (112-185)||(38015135-38015208)
chr3 (118-265)||(18357107-18357255)
chr3 (112-264)||(18765587-18765739)
chr3 (158-249)||(45680113-45680204)
chr3 (191-265)||(35906925-35906999)
chr3 (137-265)||(42626064-42626192)
chr3 (141-269)||(49644493-49644621)
[»] chr6 (15 HSPs)
chr6 (112-266)||(1493234-1493388)
chr6 (10-269)||(16890103-16890361)
chr6 (25-264)||(9959134-9959373)
chr6 (62-269)||(34355733-34355940)
chr6 (34-272)||(31029044-31029282)
chr6 (111-184)||(13825465-13825538)
chr6 (118-264)||(30140932-30141078)
chr6 (118-258)||(16416601-16416741)
chr6 (111-179)||(10910523-10910591)
chr6 (121-265)||(23508843-23508987)
chr6 (111-179)||(30588968-30589036)
chr6 (112-263)||(17752260-17752411)
chr6 (205-265)||(13768240-13768300)
chr6 (208-287)||(10910965-10911044)
chr6 (206-255)||(187123-187172)
[»] scaffold0040 (1 HSPs)
scaffold0040 (111-272)||(62474-62635)
[»] scaffold0789 (1 HSPs)
scaffold0789 (112-282)||(4193-4362)
[»] scaffold0011 (1 HSPs)
scaffold0011 (111-177)||(191085-191151)
[»] scaffold0643 (1 HSPs)
scaffold0643 (118-264)||(1048-1194)
[»] scaffold0303 (1 HSPs)
scaffold0303 (112-164)||(14191-14243)
[»] scaffold0341 (2 HSPs)
scaffold0341 (205-265)||(1929-1989)
scaffold0341 (205-265)||(9585-9645)
[»] scaffold0198 (1 HSPs)
scaffold0198 (206-265)||(21815-21874)
[»] scaffold0019 (1 HSPs)
scaffold0019 (118-261)||(73335-73478)


Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 10 - 721
Target Start/End: Complemental strand, 30191195 - 30190485
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||| || ||||| |||||||||||||||||    
T  30191195 acagactctaagttgacagctgacgccttcctttctaccatgaacgacttgtccgaatttggctgcattattttctcctgtcgttctttgttcagtactt 30191096  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
    |||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||  ||| ||||||||||||||| |||||||    
T  30191095 ccttttctaactttagggtggagtttgttaggcaacaagccaacgtggttgctcatgctcttacaagagagaccacgtctttagctagtcccgccgttta 30190996  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttccctaaataaataaaaaatcatcgttgattttcaataaa 309  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||   ||| |||||||||||||||||||||||||||    
T  30190995 ttttgatatatccaattgtattgaaactcttattattaatgaaatgttataagcatgtttttcctattaaaaaaaaaaatcatcgttgattttcaataaa 30190896  T
Q  310 aagtttctccttttagctcatttaacatctgcaatattttagacaaacccataaatgaatatgtataagcttcgtatgcagtaatgttataagttcccaa 409  Q
    ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30190895 aagtttctccttttagctcatttaacatctgtagtatgttagacaaacccataaatgaatatgtataagcttcgtatgcagtaatgttataagttcccaa 30190796  T
Q  410 gaaattcatgaattacatgttcatgtaagtagggtaacaggaaaaaagcgttgactttaaagtacatctgcttataaaatgccaaatattgaatatggtc 509  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30190795 gaaattcatgaattccatgttcatgtaagtagggtaacaggaaaaaagcgttgactttaaagtacatctgcttataaaatgccaaatattgaatatggtc 30190696  T
Q  510 tcnnnnnnncttggtgacgactacattttgaccacaaggaatatggtcttgcatacaaannnnnnnnnnncttcaggaaatggtcttgcatacacattgt 609  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||| ||            |||||||||||||||||||||||||||||    
T  30190695 tctttttttcttggtgacgactacattttgaccacaaggaatatggtcttgcatac-aattttttttttctttcaggaaatggtcttgcatacacattgt 30190597  T
Q  610 gagcattattttcttttgaaggtttgtgaccattattgataattcatgataacgatggttgataccctacatttgattatgctttctaattctatgtatg 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30190596 gagcattattttcttttgaaggtttgtgaccattattgataattcatgataacgatggttgataccctacatttgattatgctttctaattctatgtatg 30190497  T
Q  710 aaacttcgggga 721  Q
    ||||||||||||    
T  30190496 aaacttcgggga 30190485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 55227504 - 55227771
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||| |||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  55227504 acagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttcctcctgtcgttctttgttcagtactt 55227603  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  55227604 tcttttctaactctagggtggagtttgttaggcgacaaaccaacgtggttgctcatgctcttgcaagggaggccacatctttagctagtcccgccgttta 55227703  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttccctaaa 277  Q
    |||| ||||| |||||| |||||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  55227704 ttttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcatgttttccttaaa 55227771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 30859255 - 30859513
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||| |||| ||||||||||| |||||||||||||  |||| |||||||||||||||||    
T  30859255 acagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttcctcatgtcgttctttgttcagtactt 30859354  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||||||| |||||||    
T  30859355 tcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttaactagtcccgccgttta 30859454  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgtt 268  Q
    |||| ||||| |||||| |||||||||||||||||| ||| ||||| ||||||||||||    
T  30859455 ttttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcatgtt 30859513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 54823561 - 54823806
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    |||||||||||||||| |||||| || ||||||| ||| |||||  |||| ||| ||||| |||| |||||||||| ||||| |||||||||||| ||||    
T  54823561 acagactctaagttgatagctgatgctttcctttctactaggaatgacttgtccaaatttagctgtattatttcctcctgtcgttctttgttcagcactt 54823660  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| ||| ||||||||| |||| |||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  54823661 tcttttctaactctagggtgaagtttgttaagcgataagccaacgtagttgttcatgctcttacaagagaggtcacgtctttagctagtcccgccgttta 54823760  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatg 255  Q
    |||||||||| |||||| |||||||| | ||||||||||| |||||    
T  54823761 ttttgatatacccaattgtattgaaatttttattattaatgaaatg 54823806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 18878066 - 18878320
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||| || || | ||| |||||||||| ||| |||||| |||| || |||||| | |||||||||||||  |||| |||||||||  | | ||    
T  18878066 acagactctaaattaacggttgatgccttcctttttactaggaacgacttgtctgaattttgttgcattatttcctcatgtcgttctttgttttgcaatt 18878165  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
      |||||||||||||| |||||||||||||||||||||| ||| |  |||||||||||| ||||| |||||| ||| | |||||||| || |  ||||||    
T  18878166 tattttctaactctagggtggagtttgttaggcgacaagtcaatgcagttgctcatgcttttgcacgagaggccacgtttttagctaatctcgtcgttta 18878265  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
    || ||||||| ||| || |||||||||| ||||||||||| ||||| ||||||||    
T  18878266 ttatgatatacccacttgtattgaaactattattattaatgaaatgctataagca 18878320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 76 - 265
Target Start/End: Original strand, 4235271 - 4235460
Alignment:
Q  76 attatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaa 175  Q
    |||||||| || |||| ||||||||||  || ||  |||||||||||||| |||||||||||||||| ||||||||||| | | |||||||||||||||     
T  4235271 attatttctttttgtcgttctttgttccataatttattttctaactctagggtggagtttgttaggccacaagccaacgcgatggctcatgctcttgcac 4235370  T
Q  176 gagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    |||||| ||| |||||||||||| |  ||||||||| |||||||||||||| |||||| ||| |||| |||||| ||||| |||||||||    
T  4235371 gagaggccacgtctttagctagttctgccgtttattatgatatatccaattgtattgagactattatgattaatgaaatgctataagcat 4235460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 64 - 265
Target Start/End: Original strand, 13685954 - 13686155
Alignment:
Q  64 gaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctc 163  Q
    |||||||| |||||||| || |  ||||  |||||||||||| |||  ||| | |||||||| ||||||||||||||||||||||| |||| ||||||||    
T  13685954 gaatttgggtgcattatctcatcatgtcggtctttgttcagttctttgtttaccaactctagggtggagtttgttaggcgacaagcaaacggggttgctc 13686053  T
Q  164 atgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagc 263  Q
    ||| |||||||||||| ||||| |   |||||||||||   ||||||||| ||||| || ||| ||||||| |||||||||||||| ||||| |||||||    
T  13686054 atgttcttgcaagagaagtcacgttactagctagtcccattgtttattttcatatacccgattgtattgaatctcttattattaatgaaatgctataagc 13686153  T
Q  264 at 265  Q
    ||    
T  13686154 at 13686155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 16431501 - 16431344
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    |||||||||||||| ||||||||||||||||||||| |||||| ||||| |||||||||||||||||| | ||| |   ||| || |||| | |||||||    
T  16431501 ttttctaactctagggtggagtttgttaggcgacaaaccaacgaggttgttcatgctcttgcaagagaagccacgttactagttactcccgctgtttatt 16431402  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    |||| |||  || || |||||||| ||||||||||||| |||||||||||||||||||    
T  16431401 ttgaaatactcagttgtattgaaattcttattattaatgaaatgttataagcatgttt 16431344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 60 - 269
Target Start/End: Complemental strand, 16582536 - 16582327
Alignment:
Q  60 atccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggtt 159  Q
    ||||||||||||||| |||||||| |  |||| || |||||| | |  ||  ||||| |||| ||| |||||||||||  ||||||||||||||| || |    
T  16582536 atccgaatttggctgtattatttcttcttgtcgttatttgtttactgttttattttccaactttagggtggagtttgtcgggcgacaagccaacgaggct 16582437  T
Q  160 gctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttat 259  Q
    |||||||||||||||||||| ||||| |   ||||||||||| ||||||||||||| ||| ||| || |||||||||| ||||||||||| | ||| |||    
T  16582436 gctcatgctcttgcaagagaagtcacgttactagctagtcccaccgtttattttgaaatacccagttgtattgaaactattattattaatgatatgctat 16582337  T
Q  260 aagcatgttt 269  Q
    || |||||||    
T  16582336 aatcatgttt 16582327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 56 - 269
Target Start/End: Original strand, 14263977 - 14264190
Alignment:
Q  56 acttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgt 155  Q
    ||||||| || ||||| ||||||||||| |  |||| |||||||||  |||  |  ||||| ||||| || || |||||||||||||||||||||||||     
T  14263977 acttatctgagtttgggtgcattatttcttcatgtcgttctttgtttcgtaactttttttccaactccagggtagagtttgttaggcgacaagccaacgc 14264076  T
Q  156 ggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatg 255  Q
    ||||||||||||| | |||||||||| ||| ||||  |||||| |  || |||||| |||| || ||| || |||| ||||||||||||||||| |||||    
T  14264077 ggttgctcatgctttagcaagagaggccacgtcttatgctagttctgccatttattatgatgtacccagttgtattaaaactcttattattaatgaaatg 14264176  T
Q  256 ttataagcatgttt 269  Q
     |||||||||||||    
T  14264177 ctataagcatgttt 14264190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 76 - 269
Target Start/End: Complemental strand, 20527961 - 20527768
Alignment:
Q  76 attatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaa 175  Q
    ||||||||||  |||| |||||| || ||| || | |||  ||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||||    
T  20527961 attatttcctcttgtcgttctttatttagttctacttttgttaactctagggtggagtttgttaggcggcaagctaacggggttgctcatgctcttgcaa 20527862  T
Q  176 gagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    |||||| |   |   | ||||||||| || |||||| ||||||| || ||| |||||||||||||||||| ||| ||||| |||||| ||||||    
T  20527861 gagaggccttgttactcgctagtcccgccatttattatgatatacccgattgtattgaaactcttattatcaatgaaatgctataagtatgttt 20527768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 64 - 265
Target Start/End: Complemental strand, 37061243 - 37061042
Alignment:
Q  64 gaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctc 163  Q
    |||||||| ||||||||||| |  ||||| ||| | |||||  |||| ||| | |||||||| |||||||||| |||| ||||| | || ||||||||||    
T  37061243 gaatttgggtgcattatttcttcttgtcaatctcttttcagctcttcttttaccaactctagggtggagtttgctaggtgacaaacaaatgtggttgctc 37061144  T
Q  164 atgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagc 263  Q
    |||  ||||||||||| | ||  | | |||||||||||   ||||||||| | ||| || ||| ||||||| |||||||||||||  |||||||||||||    
T  37061143 atgtgcttgcaagagaagccatgtttctagctagtcccgttgtttattttaacatacccgattgtattgaatctcttattattaacgaaatgttataagc 37061044  T
Q  264 at 265  Q
    ||    
T  37061043 at 37061042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 118 - 264
Target Start/End: Complemental strand, 54027842 - 54027696
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| ||||||||| ||||||||||||| || ||||| |||||  |||||| | | || | ||||| | | |||| |||| |  |||||||| |||    
T  54027842 aactctagggtggagttttttaggcgacaagctaatgtggtggctcacactcttgtaggggaagccacatttctcgctactcccgctatttattttcata 54027743  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
    || ||||||||||||||||| | ||||||||| ||||| ||||||||    
T  54027742 tacccaattatattgaaactttgattattaatgaaatgatataagca 54027696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 118 - 264
Target Start/End: Complemental strand, 27087587 - 27087441
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| ||||||||||||||||||||||| || ||||| | |||  |||||||||  || | ||||| | | ||||||||| |  | |||||| |||    
T  27087587 aactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcata 27087488  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
    ||  ||||| |||||||||| | ||||||||| ||||| ||||||||    
T  27087487 tactcaattgtattgaaactttgattattaatgaaatgctataagca 27087441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 112 - 264
Target Start/End: Original strand, 28860783 - 28860935
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    |||| ||||||| | |||||||||||||||||||||||||| ||||| |||||  |||| || ||||||| |||||  ||||||||| ||   |||||||    
T  28860783 ttttttaactctcgggtggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttatt 28860882  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
     || ||||  ||||| ||||||| || | ||||| ||| | ||| ||||||||    
T  28860883 atgctatactcaattgtattgaatctttgattataaatgatatgctataagca 28860935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 264
Target Start/End: Complemental strand, 27066486 - 27066340
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| |||||||||||| |||||||||| || ||||| | |||  |||||||||  || | ||||| | | ||||||||| |  | |||||| |||    
T  27066486 aactctagggtggagtttgttgggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcata 27066387  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
    ||  ||||| |||||||||| | ||||||||| ||||| ||||||||    
T  27066386 tactcaattgtattgaaactttgattattaatgaaatgctataagca 27066340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 4462660 - 4462715
Alignment:
Q  206 tttattttgatatatccaattatattgaaactcttattattaataaaatgttataa 261  Q
    |||||||| |||||||  | | |||||||||| |||||||||||||||||||||||    
T  4462660 tttattttcatatatctgaatgtattgaaacttttattattaataaaatgttataa 4462715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 19069034 - 19069095
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttgg 71  Q
    |||||||| |||||||||||||| || ||||| | || ||||||| |||| |||||||||||    
T  19069034 acagactcgaagttgacagctgatgctttcctctctagcaggaacgacttgtccgaatttgg 19069095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 27066680 - 27066623
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaa 175  Q
    |||||||| ||||||||||||||||||||||| || ||||| | |||  |||||||||    
T  27066680 aactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaa 27066623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 27066874 - 27066817
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaa 175  Q
    |||||||| ||||||||||||||||||||||| || ||||| | |||  |||||||||    
T  27066874 aactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaa 27066817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 3e-96; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 22292271 - 22292533
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||| |||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  22292271 acagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttcctcctgtcgttctttgttcagtactt 22292370  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||    
T  22292371 tcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgttta 22292470  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttcc 272  Q
    |||| ||||| |||||| |||||||||||||||||| ||| ||||| ||||||||||||||||    
T  22292471 ttttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcatgttttcc 22292533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 28246153 - 28246428
Alignment:
Q  14 actctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttcctt 113  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||  ||||||||||| ||||| |||    
T  28246153 actctaagttgacagctcaagccttcctttctaccaggaacgacttgtccgaatttggctgcattatttcctcctgttgttctttgttcaatactttctt 28246252  T
Q  114 ttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatttt 213  Q
    ||||||||||||  ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  28246253 ttctaactctaggatggagtttgttagacgacaagtcaacgtggttgttcatgctcttgcaagagaggtcacgtctttaactagtcccgccgtttatttt 28246352  T
Q  214 gatatatccaattatat----tgaaactcttattattaataaaatgttataagcatgttttccctaaataaataaaa 286  Q
     ||||| |||||| |||    ||||||||||||||||||| ||||||||||||   |||||||||||| ||||||||    
T  28246353 tatatacccaattgtattgaatgaaactcttattattaatgaaatgttataagacagttttccctaaa-aaataaaa 28246428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 21092101 - 21092373
Alignment:
Q  12 agactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttcc 111  Q
    ||||||||||||||||||||| || |||||||  |||| |||| |||||||||||||||||||||||||||| |  |||| ||||||||| ||||| |      
T  21092101 agactctaagttgacagctgatgctttcctttcaaccaagaacgacttatccgaatttggctgcattatttcatcttgtcgttctttgtttagtaccttt 21092200  T
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    || ||||||||||| ||||||||| |||||||||||||||| | |||  |||||||||||| || |||||||||||||||||||||||   |||||||||    
T  21092201 ttctctaactctagggtggagtttattaggcgacaagccaatggggtccctcatgctcttgtaatagaggtcacatctttagctagtcatgccgtttatt 21092300  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttccctaaataaataaaaaa 288  Q
    |||| ||| |||||| |||||||||||   |||||||| |||||||||||||||| |||||||||| ||| ||||||    
T  21092301 ttgaaatacccaattgtattgaaactc---ttattaatgaaatgttataagcatg-tttccctaaaaaaaaaaaaaa 21092373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 18759608 - 18759866
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||| || ||||||||| |||| || ||||||| |||||||||| | || ||||||||||||||||||||||||| | ||| | |    ||||| ||||    
T  18759608 acagattcaaagttgacaactgatgcattcctttctaccaggaacgatttgtccgaatttggctgcattatttcctcccgtcgtccgcgtttcagcactt 18759707  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| ||||||||||||||| || |||||||||  ||| ||||||||||||||||||||  ||||||||||| ||||||| |||||||    
T  18759708 tcttttctaactctagggtggagtttgttaggtgataagccaacgcagtt-ctcatgctcttgcaagagagaccacatctttagttagtcccgccgttta 18759806  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  18759807 ttttgatatacccaattatattgaaacttttattattaatgaaatgctataagcatgttt 18759866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 60 - 271
Target Start/End: Complemental strand, 2157975 - 2157764
Alignment:
Q  60 atccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggtt 159  Q
    |||||||||||||||||||||||| |  |||| ||| ||||||  | |||  ||||| |||||| | |||||||||||||||||||||||||||| | ||    
T  2157975 atccgaatttggctgcattatttcttcttgtcgttcgttgttccctcctttattttccaactctcgggtggagtttgttaggcgacaagccaacgagatt 2157876  T
Q  160 gctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttat 259  Q
    ||| |||||||||||||||| | ||| |   |||||||||||   ||||||||||| ||| |||||| |||||||||| ||||||| ||| ||||| |||    
T  2157875 gcttatgctcttgcaagagaagccacgttactagctagtcccgttgtttattttgagatacccaattgtattgaaactattattatcaatgaaatgctat 2157776  T
Q  260 aagcatgttttc 271  Q
    ||||||||||||    
T  2157775 aagcatgttttc 2157764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 61 - 269
Target Start/End: Complemental strand, 19741727 - 19741519
Alignment:
Q  61 tccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttg 160  Q
    ||||||||||||||||||||||| |  |||| ||||||||| | | |||  ||||| |||||||| ||| | ||||||||||||||||| |||| |||||    
T  19741727 tccgaatttggctgcattatttcttcttgtcgttctttgtttacttctttattttccaactctagggtgaaatttgttaggcgacaagctaacggggttg 19741628  T
Q  161 ctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttata 260  Q
    ||||||||||||||||||| | |||||   ||||||||||| | ||||||  ||| |||   | || |||||||||||||||||| ||| ||||||||||    
T  19741627 ctcatgctcttgcaagagaagccacattactagctagtcccgctgtttatcatgaaatacatatttgtattgaaactcttattatcaatgaaatgttata 19741528  T
Q  261 agcatgttt 269  Q
    |||| ||||    
T  19741527 agcaagttt 19741519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 118 - 265
Target Start/End: Original strand, 36044917 - 36045064
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||||||| |||||||||||||||||||||| | ||||||||||  ||||| | |||| | |||||   ||||||||||| || |||||||| |||    
T  36044917 aactctagagtgaagtttgttaggcgacaagccaatgaggttgctcatattcttgtaggagaagccacattactagctagtcccaccatttattttcata 36045016  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    |  || | | ||||||| |||||||||||||| ||||| |||||||||    
T  36045017 tgcccgaatgtattgaatctcttattattaatgaaatgctataagcat 36045064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 19237666 - 19237813
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| ||||||||| ||||||||||||| || | ||||||||||| ||||||||||||||||||     |||||| | || | ||||||||| |||    
T  19237666 aactctagggtggagtttattaggcgacaagcaaatgaggttgctcatgttcttgcaagagaggtcacgctactagctaattccactgtttattttcata 19237765  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagcatgttttc 271  Q
    ||||| |      |||| |||||||||||||| ||||||||||||||| |||||    
T  19237766 tatccga------tgaacctcttattattaatgaaatgttataagcatattttc 19237813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 118 - 264
Target Start/End: Complemental strand, 29755093 - 29754948
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| ||||||||||||||||||||||| || ||||| |||||  ||||||||| ||| | ||||| | | ||||||||| |  | |||||| |||    
T  29755093 aactctagggtggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaa-agaagccacatttctcgctagtcccgctatctattttcata 29754995  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
    || |||||| |||||||||| | ||||||||| ||||| ||||||||    
T  29754994 tacccaattgtattgaaactttgattattaatgaaatgctataagca 29754948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 16088563 - 16088702
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    |||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||          || |||||||||||        |||||||    
T  16088563 ttttctaactctagggtggagtttgttaggcgacaagctaatatggttgctcatgctcttg----------catatctttagcta--------gtttatt 16088644  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
     ||||||||||||||||||||||||| |||| |||||| ||||| |||||||| ||||    
T  16088645 atgatatatccaattatattgaaactattatgattaatgaaatgctataagcacgttt 16088702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 5335349 - 5335206
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| |||||||||||||||| |||||| || ||| | |||||  |||||||||  || | ||||| | | ||||||| | |  | |||||| |||    
T  5335349 aactctagggtggagtttgttaggcaacaagctaatgtgttggctcacactcttgcaaaggaagccacatttctcgctagtctcgctatctattttcata 5335250  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataa 261  Q
     ||||||||||||||||||| | ||||||||| ||||| |||||    
T  5335249 aatccaattatattgaaactttgattattaatgaaatgatataa 5335206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 40299902 - 40299954
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctct 170  Q
    |||||| | ||||||||||||||||||||||| ||||||||||||||| ||||    
T  40299902 aactctcgggtggagtttgttaggcgacaagcaaacgtggttgctcatactct 40299954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 264
Target Start/End: Complemental strand, 13948916 - 13948783
Alignment:
Q  131 agtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatat 230  Q
    ||||||||||| ||||||| || || ||| ||||| |||| ||| |||||||||| | | |||||||| ||   ||||||||| ||||| || ||| |||    
T  13948916 agtttgttaggagacaagcaaatgtagtttctcatactctcgcatgagaggtcacgtttctagctagttccgttgtttattttcatataccctattgtat 13948817  T
Q  231 tgaaactcttattattaataaaatgttataagca 264  Q
    ||||||| | ||||||| | | ||| ||||||||    
T  13948816 tgaaactttgattattattgatatgctataagca 13948783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 255
Target Start/End: Original strand, 27493262 - 27493390
Alignment:
Q  127 gtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaatt 226  Q
    ||||||||||||| |||||||||||| || |  |||||| |||| |||  ||||| ||| |  |||||||||||| | ||||||| || |||| ||||||    
T  27493262 gtggagtttgttaagcgacaagccaatgtagcagctcatactctcgcagaagaggccacgttattagctagtcccgcagtttattatgttatacccaatt 27493361  T
Q  227 atattgaaactcttattattaataaaatg 255  Q
     ||||||| || | ||||| ||| |||||    
T  27493362 gtattgaatctttgattataaatgaaatg 27493390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 32065643 - 32065599
Alignment:
Q  226 tatattgaaactcttattattaataaaatgttataagcatgtttt 270  Q
    |||||| | ||||||||||||||||||||||||||||||| ||||    
T  32065643 tatattaacactcttattattaataaaatgttataagcatatttt 32065599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 34920075 - 34920008
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagaga 179  Q
    |||||||||||||| || |||||| | ||||||||||| ||||   |||||||||| |||||||||||    
T  34920075 ttttctaactctagggtagagtttttcaggcgacaagcaaacggaattgctcatgcacttgcaagaga 34920008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 26683471 - 26683596
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    ||||| |||||| | ||||||||||||  ||||||||  || ||||| |||||| |||||||| | |||| ||||| | | ||||||||| |  ||||||    
T  26683471 ttttccaactctcgggtggagtttgttccgcgacaagttaatgtggtggctcatactcttgcaggggaggccacatttcttgctagtcccgctatttatt 26683570  T
Q  212 ttgatatatccaattatattgaaact 237  Q
    || |||||  || || ||||||||||    
T  26683571 ttcatatactcagttgtattgaaact 26683596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 29358700 - 29358753
Alignment:
Q  209 attttgatatatccaattatattgaaactcttattattaataaaatgttataag 262  Q
    |||||||||||||| |||||||||  ||||||||||| ||| ||||| ||||||    
T  29358700 attttgatatatccgattatattgctactcttattatgaatgaaatgctataag 29358753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 29955594 - 29955461
Alignment:
Q  128 tggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaatta 227  Q
    ||||||||| |||||||||| | ||  ||||||||||||  |||| |||||| ||||| | | || |||||| |   ||||||||| | ||| |  |||     
T  29955594 tggagtttgctaggcgacaaacaaatatggttgctcatgtgcttgtaagagaagtcacgtttctaactagtctcattgtttattttaacatacctgattg 29955495  T
Q  228 tattgaaactcttattattaataaaatgttataa 261  Q
    ||||||| || ||||||||||| |||||||||||    
T  29955494 tattgaatcttttattattaatgaaatgttataa 29955461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 16206431 - 16206698
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||| |||||    
T  16206431 acagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttcctcctgtcgttctttgttcattactt 16206530  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||    
T  16206531 tcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgttta 16206630  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttccctaaa 277  Q
    |||| ||||| |||||| |||||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  16206631 ttttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcatgttttccttaaa 16206698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 60 - 271
Target Start/End: Original strand, 36641301 - 36641512
Alignment:
Q  60 atccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggtt 159  Q
    |||||||||||||||||||||||| |  |||| ||| ||||||| | |||  ||||  |||||| | |||||||||||||||||||||||||||| ||||    
T  36641301 atccgaatttggctgcattatttcttcttgtcgttcgttgttcactgctttatttttcaactctcgggtggagtttgttaggcgacaagccaacgaggtt 36641400  T
Q  160 gctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttat 259  Q
    |||||||||||||||| ||| | |||||   |||||||||||   ||||||||||| ||| ||||||||||||||| | ||||||| ||| ||||  |||    
T  36641401 gctcatgctcttgcaaaagaagccacattactagctagtcccgttgtttattttgagatacccaattatattgaaattattattatcaatgaaatactat 36641500  T
Q  260 aagcatgttttc 271  Q
    ||||||||||||    
T  36641501 aagcatgttttc 36641512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 64 - 265
Target Start/End: Complemental strand, 11818637 - 11818436
Alignment:
Q  64 gaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctc 163  Q
    |||||||| |||||||| || |  ||||| ||| |||| ||| ||| |||| | |||||||| ||||||||||||||||||||||| |||| ||||||||    
T  11818637 gaatttgggtgcattatctcatcatgtcagtctctgtttagttctttctttaccaactctagggtggagtttgttaggcgacaagcaaacgaggttgctc 11818538  T
Q  164 atgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagc 263  Q
    ||| ||||||| |||| | ||| |   |||||||||||    |||||||| | ||| |||||||||||||| |||||||||||||| ||||| |||||||    
T  11818537 atgttcttgcaggagaagccacgttactagctagtcccgttatttattttcagatacccaattatattgaacctcttattattaatgaaatgctataagc 11818438  T
Q  264 at 265  Q
    ||    
T  11818437 at 11818436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 111 - 269
Target Start/End: Original strand, 2058701 - 2058859
Alignment:
Q  111 cttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttat 210  Q
    |||||| |||||||  ||||||||||||||||||||| |||||  |||| |||||||||||||||||||    || |  ||||||| |||| | ||||||    
T  2058701 cttttcgaactctaaggtggagtttgttaggcgacaaaccaacacggttactcatgctcttgcaagagaaactacgttattagctaatcccgctgtttat 2058800  T
Q  211 tttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    | ||||||| |||||| |||||||||||||||||| ||| |||||||||||||| ||||    
T  2058801 tatgatatacccaattgtattgaaactcttattatcaattaaatgttataagcaagttt 2058859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 23379863 - 23380019
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    ||||| |||||||| ||||||||| ||||| |||| ||||||| ||||| | ||||||| |||||||| |||||||   |||||||| || | |||||||    
T  23379863 ttttccaactctagggtggagtttattaggtgaca-gccaacgaggttgtttatgctctcgcaagagaagtcacattactagctagttccgctgtttatt 23379961  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    || | ||| |||||| |||||||||| ||||||||||| |||||||||||||||||||    
T  23379962 ttaaaatacccaattgtattgaaactattattattaatgaaatgttataagcatgttt 23380019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 11502316 - 11502396
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatcttta 192  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||    
T  11502316 ttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagagaagccacgtcttta 11502396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 64 - 269
Target Start/End: Complemental strand, 23762701 - 23762497
Alignment:
Q  64 gaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctc 163  Q
    ||||||||||| ||||||||||  |||| |||||| || ||| || | |||  ||||||||| ||||||||||||||||||||||| |||| | ||||||    
T  23762701 gaatttggctgtattatttcctcttgtcgttctttatttagttctacttttgttaactctag-gtggagtttgttaggcgacaagctaacgggattgctc 23762603  T
Q  164 atgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagc 263  Q
     |||||||||||||| || |   |   | ||||||||| ||||||||| | ||||| || ||| |||||||||||| ||||| ||| ||||| ||||| |    
T  23762602 gtgctcttgcaagagtggccttgttacttgctagtcccgccgtttattataatatacccgattgtattgaaactctgattatcaatgaaatgctataaac 23762503  T
Q  264 atgttt 269  Q
    ||||||    
T  23762502 atgttt 23762497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 111 - 269
Target Start/End: Original strand, 44886288 - 44886446
Alignment:
Q  111 cttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttat 210  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| ||||||||||| | ||| |  ||||||| |||| |  |||||    
T  44886288 cttttctaactctagggtggagtttgttaggcgacaagtcaacgcggttgctcatgcacttgcaagagaagccacgttcttagctaatcccactatttat 44886387  T
Q  211 tttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    | ||||||| || | | ||||||| |  | ||||| ||| ||||| ||||| |||||||    
T  44886388 tatgatatacccgaatgtattgaatccttaattatcaatgaaatgctataaacatgttt 44886446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 64 - 269
Target Start/End: Complemental strand, 23761568 - 23761364
Alignment:
Q  64 gaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctc 163  Q
    |||||||| || ||||||||||  | || |||||| || ||| || | |||  ||||||||| ||||||||||||||||||||||| |||| | ||||||    
T  23761568 gaatttggttgtattatttcctcttatcgttctttatttagttctacttttgttaactctag-gtggagtttgttaggcgacaagcaaacgggattgctc 23761470  T
Q  164 atgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagc 263  Q
    ||||||||||||||||   |   |   |  |||||||| ||||||||| ||||||| || ||| |||||||||||| ||||| ||| ||||| |||||||    
T  23761469 atgctcttgcaagagataccttgttactcactagtcccgccgtttattatgatatacccgattgtattgaaactctgattatcaatgaaatgctataagc 23761370  T
Q  264 atgttt 269  Q
    ||||||    
T  23761369 atgttt 23761364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 64 - 269
Target Start/End: Complemental strand, 23789712 - 23789508
Alignment:
Q  64 gaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctc 163  Q
    |||||||| || ||||||||||  | || |||||| || ||| || | |||  ||||||||| ||||||||||||||||||||||| |||| | ||||||    
T  23789712 gaatttggttgtattatttcctcttatcgttctttatttagttctacttttgttaactctag-gtggagtttgttaggcgacaagcaaacgggattgctc 23789614  T
Q  164 atgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagc 263  Q
    ||||||||||||||||   |   |   |  |||||||| ||||||||| ||||||| || ||| |||||||||||| ||||| ||| ||||| |||||||    
T  23789613 atgctcttgcaagagataccttgttactcactagtcccgccgtttattatgatatacccgattgtattgaaactctgattatcaatgaaatgctataagc 23789514  T
Q  264 atgttt 269  Q
    ||||||    
T  23789513 atgttt 23789508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 27268086 - 27267909
Alignment:
Q  61 tccgaatttggct-gcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggtt 159  Q
    ||||||||||| | |||||||||| |  |||||||||||||| | | |||  |||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  27268086 tccgaatttggtttgcattatttcttcttgtcattctttgtttatttctttattttctaactctagggtggagtttgttaggtgacaagctaacgaggtt 27267987  T
Q  160 gctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaact 237  Q
    |||||| | ||||||||||| | ||| |   ||| |||||||   ||||||| ||| ||| |||||| ||||||||||    
T  27267986 gctcatacacttgcaagagaagccacgttactagttagtcccattgtttattatgaaatacccaattgtattgaaact 27267909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 118 - 265
Target Start/End: Original strand, 11553327 - 11553474
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| |||||||||  | |||||||||| || | ||||| ||||| ||| ||| |||| | |||||   ||||||||||| || |||||||| |||    
T  11553327 aactctagggtggagtttactcggcgacaagctaatgaggttgatcatgttctcgcaggagaagccacattactagctagtcccaccatttattttcata 11553426  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    || || | |||||||||||||||||||||||| ||||  |||||||||    
T  11553427 tacccgaatatattgaaactcttattattaatgaaatactataagcat 11553474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 14231023 - 14231154
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||||||||||||||||||||||||||| || ||||| |||||  |||||||||| || | ||||| | | |||||||||    | |||||| |||    
T  14231023 aactctagagtggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaagggaagccacatttctcgctagtcccgttatctattttcata 14231122  T
Q  218 tatccaattatattgaaactcttattattaat 249  Q
    || |||||| |||||||||| | |||||||||    
T  14231123 tacccaattgtattgaaactttgattattaat 14231154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 20661187 - 20661344
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    ||||||| |||||| ||||||||||||||| ||||||  |||  ||||||||||||||||||||||||   ||| |   ||||||||||| | || ||||    
T  20661187 ttttctacctctagggtggagtttgttaggtgacaagttaacagggttgctcatgctcttgcaagagacaccacgttactagctagtcccgctgtctatt 20661286  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
     ||| ||| |||||| ||||||| || | ||||| ||| ||||| |||||||| ||||    
T  20661287 atgacatacccaattgtattgaatctttgattatcaatgaaatgctataagcaagttt 20661344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 255
Target Start/End: Original strand, 33650877 - 33651014
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||||||| ||||||  |||| |||||| || | ||||| |||||  ||||||  ||| ||||| | | |||||||||||   ||||||||| | |    
T  33650877 aactctagagtgaagtttgccaggcaacaagcaaatgcggttgttcatgtgcttgcagaagaagtcacgtttctagctagtcccgttgtttattttaaca 33650976  T
Q  218 tatccaattatattgaaactcttattattaataaaatg 255  Q
    || |||||  |||||||  ||||||||||||| |||||    
T  33650977 tacccaatcgtattgaatatcttattattaatgaaatg 33651014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 8e-94; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 14505613 - 14505875
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||| ||||||  |||||||| ||||||||||||| ||||| |||||||||||||||||    
T  14505613 acagactctaagttgacagctgaagccttcctttctactagaaacgacttataagaatttggatgcattatttcctcctgtcgttctttgttcagtactt 14505712  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||    
T  14505713 tcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgttta 14505812  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttcc 272  Q
    |||| ||||| |||||| |||||||||||||||||| ||| ||||| ||||||||||||||||    
T  14505813 ttttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcatgttttcc 14505875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 15990658 - 15990396
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||| |||||    
T  15990658 acagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttcctcctgtcgttctttgttcattactt 15990559  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||    
T  15990558 tcttttctaactctagggtggagtttgttaggcgacaagcctacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgttta 15990459  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttcc 272  Q
    |||| ||||| |||||| |||||||||||||||||| ||| ||||| ||||||||||||||||    
T  15990458 ttttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcatgttttcc 15990396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 1186437 - 1186713
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||||||| ||||| |||||| ||| ||||||    
T  1186437 acagactctaagttgacagctgacgccttcctttctaccaggaacgacttgtccgaatttggttgcattatttcctcctgtcgttctttattctgtactt 1186536  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| |||||||||| ||    ||||||    
T  1186537 cattttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgctaaagagatcacgtctttagctaatcgaatcgttta 1186636  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttccctaaataaataaaa 286  Q
    |||| |||||| |||||||||||||||| ||||||||||| ||||| || ||  ||||||| | |||| ||||||||    
T  1186637 ttttaatatattcaattatattgaaacttttattattaatgaaatgctacaaatatgtttttcttaaaaaaataaaa 1186713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 37590285 - 37590023
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||| |||||| || ||||| |||||||||| ||| || ||| |||| ||| ||||||| |||||| |||||| | ||| |||||||||||||| ||    
T  37590285 acagactttaagttaacggctgaagccttcctttctactagaaacgacttgtccaaatttggatgcattgtttcctcccgtcgttctttgttcagtattt 37590186  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| || |||||||    
T  37590185 tcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagttccgccgttta 37590086  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttcc 272  Q
    |||| ||||| |||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  37590085 ttttaatatacccaattgtattgaaactcttattattaatgaaatgctataagcatgttttcc 37590023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 19299269 - 19299024
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    |||||||||||||||| |||||| || ||||||| ||| |||||  |||| ||| ||||| |||| |||||||||| ||||| |||||||||||| ||||    
T  19299269 acagactctaagttgatagctgatgctttcctttctactaggaatgacttgtccaaatttagctgtattatttcctcctgtcgttctttgttcagcactt 19299170  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| ||| ||||||||| |||| |||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  19299169 tcttttctaactctagggtgaagtttgttaagcgataagccaacgtagttgttcatgctcttacaagagaggtcacgtctttagctagtcccgccgttta 19299070  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatg 255  Q
    |||||||||| |||||| |||||||| | ||||||||||| |||||    
T  19299069 ttttgatatacccaattgtattgaaatttttattattaatgaaatg 19299024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 17837315 - 17837143
Alignment:
Q  97 ttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagcta 196  Q
    |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| | ||| ||||||||||    
T  17837315 ttgttcagtaatttcttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatactcttgcaagagaagccacgtctttagcta 17837216  T
Q  197 gtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    ||||  |||||||||| |||||| || ||||||||||| || | ||||||||| ||||| |||||||||||||    
T  17837215 gtcctgccgtttatttcgatatacccgattatattgaatctttaattattaatgaaatgctataagcatgttt 17837143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 27978643 - 27978888
Alignment:
Q  16 tctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttcctttt 115  Q
    ||||| || |||| ||| |||||||||| ||  |||||  |||| || ||||||||| | |||||||| | ||||| |||||||||  | | ||  ||||    
T  27978643 tctaaattaacagttgatgccttcctttctaaaaggaatgacttgtctgaatttggccgtattatttcttcctgtcgttctttgtttcgcaatttatttt 27978742  T
Q  116 ctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttga 215  Q
    |||||||||  |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||  |||||||| |||    
T  27978743 ctaactctatggtggagtttgttaggctacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccttcgtttattatga 27978842  T
Q  216 tatatccaattatattgaaactcttattattaataaaatgttataa 261  Q
    |||| |||||| |||||||||| |||| |||||| |||||||||||    
T  27978843 tatacccaattttattgaaactattatgattaatgaaatgttataa 27978888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 28035912 - 28036157
Alignment:
Q  16 tctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttcctttt 115  Q
    ||||| || |||| ||| |||||||||| ||  |||||  |||| || ||||||||| | |||||||| | ||||| |||||||||  | | ||  ||||    
T  28035912 tctaaattaacagttgatgccttcctttctaaaaggaatgacttgtctgaatttggccgtattatttcttcctgtcgttctttgtttcgcaatttatttt 28036011  T
Q  116 ctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttga 215  Q
    |||||||||  |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||  |||||||| |||    
T  28036012 ctaactctatggtggagtttgttaggctacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccttcgtttattatga 28036111  T
Q  216 tatatccaattatattgaaactcttattattaataaaatgttataa 261  Q
    |||| |||||| |||||||||| |||| |||||| |||||||||||    
T  28036112 tatacccaattttattgaaactattatgattaatgaaatgttataa 28036157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 34724086 - 34723846
Alignment:
Q  25 acagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactcta 124  Q
    |||| ||| |||||||||  |||  ||||| |||| || ||||||||||  |||||| | | ||||| |||||||||  ||| ||  ||||||||||| |    
T  34724086 acagttgatgccttccttgctacacggaacgacttgtctgaatttggctctattattacttcctgtcgttctttgtttcgtaatttattttctaactcca 34723987  T
Q  125 gagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaa 224  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||| | ||||||||| ||||||| ||||    
T  34723986 gggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagagaagccacgtctttagctagtctcgccgtttattatgatatacccaa 34723887  T
Q  225 ttatattgaaactcttattattaataaaatgttataagcat 265  Q
    || ||||||| || |||| |||||| ||||| | |||||||    
T  34723886 ttgtattgaatctattatgattaatgaaatgctctaagcat 34723846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 61 - 269
Target Start/End: Complemental strand, 14657903 - 14657695
Alignment:
Q  61 tccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttg 160  Q
    ||||||||||| ||||||||||| |  ||||||| |||||| | |  ||   ||||||||||||| |||||||||||||||||||||||||||  |||      
T  14657903 tccgaatttggttgcattatttcttcttgtcattatttgtttacttatttagtttctaactctagggtggagtttgttaggcgacaagccaacaaggtat 14657804  T
Q  161 ctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttata 260  Q
    ||||||||||||||||||| | ||| |   |||| |||| |   ||||||||||||||| | |||| ||||||||||||||| || ||| ||||| ||||    
T  14657803 ctcatgctcttgcaagagaagccacgttactagccagtcacattgtttattttgatatacctaattgtattgaaactcttataatcaatgaaatgctata 14657704  T
Q  261 agcatgttt 269  Q
    |||||||||    
T  14657703 agcatgttt 14657695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 34 - 272
Target Start/End: Original strand, 35284950 - 35285188
Alignment:
Q  34 gccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagt 133  Q
    |||||||||| |||  ||||| || | || |||||||| |  |||||||| |  |||| |||||||| | ||| ||  ||||| |||||||| |||||||    
T  35284950 gccttcctttctacacggaacgacctttctgaatttggttatattatttcttcttgtcgttctttgtaccgtaatttattttccaactctagggtggagt 35285049  T
Q  134 ttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattga 233  Q
    |||||||||||||||| |||| ||| |||||| |||||||| |||||| ||| || |||||||||||| | || |||| ||||||| |||||| ||||||    
T  35285050 ttgttaggcgacaagctaacgcggtggctcatactcttgcacgagaggccacgtccttagctagtcccgctgtctattatgatatacccaattgtattga 35285149  T
Q  234 aactcttattattaataaaatgttataagcatgttttcc 272  Q
      || |||| || ||| ||||| ||||||||| ||||||    
T  35285150 ggctattatgatcaatgaaatgctataagcatcttttcc 35285188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 4518363 - 4518468
Alignment:
Q  127 gtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaatt 226  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||  ||| ||||||||||||||| | || |||| ||||||||||||||    
T  4518363 gtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagagaccacgtctttagctagtcccgctgtctattatgatatatccaatt 4518462  T
Q  227 atattg 232  Q
     |||||    
T  4518463 gtattg 4518468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 127 - 269
Target Start/End: Original strand, 953679 - 953821
Alignment:
Q  127 gtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaatt 226  Q
    ||||||||||||  ||||||||| |||| | ||||||||| ||||||| |||| ||||| |   |||||||||||   ||||||||| | ||||| ||||    
T  953679 gtggagtttgtttagcgacaagcaaacgagtttgctcatgttcttgcaggagaagtcacgttactagctagtcccgttgtttattttcacatatctaatt 953778  T
Q  227 atattgaaactcttattattaataaaatgttataagcatgttt 269  Q
     ||||||| |||||||||||||||||||| ||| |||||||||    
T  953779 gtattgaacctcttattattaataaaatgctatgagcatgttt 953821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 64 - 265
Target Start/End: Complemental strand, 26932055 - 26931852
Alignment:
Q  64 gaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctc 163  Q
    |||||||| ||||||||||| | ||||| | || |  | ||| ||| |||| | |||||||| || ||||||||||||| ||||||||| |  |||| ||    
T  26932055 gaatttgggtgcattatttcttcctgtcgtactctagttagttctttctttaccaactctagggtagagtttgttaggcaacaagccaatgaagttgttc 26931956  T
Q  164 atgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttat--tattaataaaatgttataa 261  Q
    ||| ||||||| |||| | |||||   ||||||||| | || |||||||| |||||||| | | ||||||| |||||||  ||||||| ||||| |||||    
T  26931955 atgttcttgcaggagaagccacattactagctagtctcgccatttattttcatatatccgaatgtattgaatctcttattatattaatgaaatgatataa 26931856  T
Q  262 gcat 265  Q
    ||||    
T  26931855 gcat 26931852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 265
Target Start/End: Complemental strand, 2246861 - 2246714
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| |||||||||||||||| |||||| |||| ||||||||||| ||||||| |||| ||||  |   |||||||||     ||||||||| | |    
T  2246861 aactctagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggagaagtcatgttactagctagtcatgttgtttattttcaca 2246762  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    || |  ||| ||||||| |||||||||||||| ||||| |||||||||    
T  2246761 tacctgattgtattgaacctcttattattaatgaaatgctataagcat 2246714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 264
Target Start/End: Original strand, 10601103 - 10601240
Alignment:
Q  127 gtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaatt 226  Q
    |||||||||||| |||||||||| || ||||| |||||  |||| ||| | || | ||||| | | ||||||||| |  ||||| || ||||| ||||||    
T  10601103 gtggagtttgttcggcgacaagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccactatttatcttcatatacccaatt 10601202  T
Q  227 atattgaaactcttattattaataaaatgttataagca 264  Q
    ||||||||||| | |||| |||| ||||| ||||||||    
T  10601203 atattgaaactttgattactaatgaaatgctataagca 10601240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 42080464 - 42080610
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||| | |||||||||| |||| ||||||| || ||| |||||||| |||||||| |||||  ||||| | |||| | ||||   ||||||||| |||    
T  42080464 aactctcgggtggagtttgctaggagacaagcaaatgtgattgctcatactcttgcaggagagaccacatttgtagccaatcccgttgtttattttcata 42080563  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
     | | |||||||||| |||| | ||||||||||| |||  |||||||    
T  42080564 caccaaattatattggaactttgattattaataatatgcaataagca 42080610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 264
Target Start/End: Original strand, 23558677 - 23558798
Alignment:
Q  143 gacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttat 242  Q
    ||||||| || ||||||| |||| |||||||| ||||| | |||| | ||||||||||| |  |||||||| | ||| || | | |||||| ||| | ||    
T  23558677 gacaagcaaatgtggttgttcatactcttgcaggagagataacatttctagctagtcccactatttattttcacataccccaatgtattgagactttgat 23558776  T
Q  243 tattaataaaatgttataagca 264  Q
    | ||||| ||||||||||||||    
T  23558777 tgttaatgaaatgttataagca 23558798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 8e-94; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 30033474 - 30033752
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||| |||| ||||||||||| |||||||||||||  |||| ||||||||||| |||||    
T  30033474 acagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttcctcatgtcgttctttgttcaatactt 30033573  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||    
T  30033574 tcttttctaactctagggtggagtttgttaggcgacaagccagcgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgttta 30033673  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttccctaaataaataaaaaa 288  Q
    |||| ||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||| ||| ||||||    
T  30033674 ttttaatatacccaattatattgaaactcttattataaatgaaatgctataagcatgttttccttaaaaaaaaaaaaaa 30033752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 21701619 - 21701462
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| || |||||| ||| ||||||||||||||| |||||||||    
T  21701619 ttttctaactctagggtggagtttgttaggcgataagccaacgtggttgctcatgctctttcacgagaggccacgtctttagctagtcccgccgtttatt 21701520  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
     |||||||  ||||| ||||||||||||||| |||||| ||||| |||||||| ||||    
T  21701519 atgatatactcaattgtattgaaactcttatgattaatgaaatgctataagcacgttt 21701462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 60 - 271
Target Start/End: Original strand, 41117131 - 41117342
Alignment:
Q  60 atccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggtt 159  Q
    |||||||||||||||||||||||| |  |||| ||| ||||| | | |||  ||||| |||||| | |||||||||||||||||||||||||| | ||||    
T  41117131 atccgaatttggctgcattatttcttcttgtcgttcgttgtttactgctttattttccaactctcgggtggagtttgttaggcgacaagccaatgaggtt 41117230  T
Q  160 gctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttat 259  Q
    |||||||||||||||||||| | ||| |   ||||||||||| ||||||||||||| ||| |||||| |||| ||||| ||||||| ||| ||||| |||    
T  41117231 gctcatgctcttgcaagagaagccacgttactagctagtcccaccgtttattttgagatacccaattgtattcaaactattattatcaatgaaatgctat 41117330  T
Q  260 aagcatgttttc 271  Q
    ||||||||||||    
T  41117331 aagcatgttttc 41117342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 63 - 255
Target Start/End: Complemental strand, 40490209 - 40490017
Alignment:
Q  63 cgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgct 162  Q
    |||||||||||| || |||||||  |||| |||||| || ||  | | ||||||||||||||| ||||||||||||||||||||| |||| | ||| |||    
T  40490209 cgaatttggctgtatcatttcctcatgtcgttctttatttagctcattcttttctaactctagggtggagtttgttaggcgacaaaccaatgaggtcgct 40490110  T
Q  163 catgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatg 255  Q
    ||||||||||||||||| ||| | |   ||| ||||||| | ||||||||||||||| |  | |||||||||||||||||||| ||| |||||    
T  40490109 catgctcttgcaagagaagtcgcgttactagttagtcccgctgtttattttgatataccggaatatattgaaactcttattatcaatgaaatg 40490017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 118 - 265
Target Start/End: Complemental strand, 5185412 - 5185265
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| ||||||||||||| ||||||| |||| | ||||| ||||| |||||||||||| |||||||    |||||||||| || |||||||| |||    
T  5185412 aactctagggtggagtttgttaagcgacaaaccaatgaggttgttcatgttcttgcaagagaagtcacattaccagctagtcccgccatttatttttata 5185313  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    || || | |||||||||  ||||||||||||| |||||||||||||||    
T  5185312 tacccgaatatattgaatatcttattattaatgaaatgttataagcat 5185265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 24065213 - 24065366
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||| ||| ||||||||||||||||||||||| |||| ||||||||||| ||||||| |||| | ||| |   |||||||||||   ||||||||| | |    
T  24065213 aactttagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttgtttattttcaca 24065312  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagcatgttttc 271  Q
    || || ||| |||||||  ||||||||||||| ||||| |||||||||||||||    
T  24065313 tacccgattgtattgaacttcttattattaatgaaatgctataagcatgttttc 24065366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 9361760 - 9361828
Alignment:
Q  111 cttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagaga 179  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  9361760 cttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagaga 9361828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 24083368 - 24083458
Alignment:
Q  111 cttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccc 201  Q
    ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||| ||||||||||| | ||| |  ||||||||||||    
T  24083368 cttttctaactctacggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacgttcttagctagtccc 24083458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 94 - 265
Target Start/End: Original strand, 29115387 - 29115558
Alignment:
Q  94 tctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttag 193  Q
    |||||||||||| ||| |||| | |||||||| ||| |||||||||| |||||||| |||| ||||||||||| || || |||||||||||| |   |||    
T  29115387 tctttgttcagttctttctttaccaactctagggtgtagtttgttagacgacaagcaaacgaggttgctcatgttcctgtaagagaggtcacgttactag 29115486  T
Q  194 ctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    ||||||     ||||||||| ||||| || ||| ||| ||| ||||||||||||||  |||| |||||||||    
T  29115487 ctagtcatgttgtttattttcatatacccgattgtatggaacctcttattattaatgcaatgatataagcat 29115558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 131 - 288
Target Start/End: Original strand, 49372331 - 49372487
Alignment:
Q  131 agtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatat 230  Q
    |||||||||| |||||| | ||| ||||||||||||| ||||||||| | | ||| |   || |||||||| | ||||||| | | ||| |||||| |||    
T  49372331 agtttgttagacgacaaactaacatggttgctcatgcacttgcaagaaaagccacgttaatatctagtcccactgtttattataaaatacccaattgtat 49372430  T
Q  231 tgaaactcttattattaataaaatgttataagcatgttttccctaaataaataaaaaa 288  Q
    ||||||||||||||| ||| ||||| |||||||| | |||||||||| ||| ||||||    
T  49372431 tgaaactcttattatcaatgaaatgctataagcaag-tttccctaaaaaaaaaaaaaa 49372487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 61 - 269
Target Start/End: Complemental strand, 52147906 - 52147698
Alignment:
Q  61 tccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttg 160  Q
    |||||||| |||||||||||||| |  |||  ||||||||| | | |||  ||||| |||||||  ||| ||||||||| ||||||||| |||  |||||    
T  52147906 tccgaattcggctgcattatttcttcttgttgttctttgtttactgctttattttccaactctaaggtgaagtttgttatgcgacaagctaacagggttg 52147807  T
Q  161 ctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttata 260  Q
    | ||| ||||||||||||| | ||  |   ||||||||| | | ||||||| ||| |||  || || |||||||||||||||||| ||||||||  ||||    
T  52147806 cccattctcttgcaagagaagccatgttactagctagtcgcgcggtttattatgaaatactcatttgtattgaaactcttattatcaataaaatactata 52147707  T
Q  261 agcatgttt 269  Q
    |||| ||||    
T  52147706 agcaagttt 52147698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 24427641 - 24427485
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    |||||||||||||| || |||||| |||||||||||||||| | ||| |||||| |||||||||||||   |||||   |||||  |||  | |||||||    
T  24427641 ttttctaactctagggtcgagtttattaggcgacaagccaatgaggtcgctcatactcttgcaagagaaaccacattcctagctgatcctgctgtttatt 24427542  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    |||| ||| |  ||| |||||||||||||||||| ||  ||||| |||||| ||||||    
T  24427541 ttgaaata-ctcattgtattgaaactcttattatcaagtaaatgctataagaatgttt 24427485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 10771211 - 10771264
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcat 165  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||| ||||||    
T  10771211 ttttctaactctcgggtggagtttgttaggcgacaagccaatgtggtagctcat 10771264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 3603574 - 3603493
Alignment:
Q  205 gtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttccctaaataaataaaa 286  Q
    ||||||||| |||||  | ||| ||||||| |||||||||||||| ||||||||||| ||| |||||| |||| ||| ||||    
T  3603574 gtttattttcatatacacgattgtattgaacctcttattattaatgaaatgttataaacatattttccttaaaaaaaaaaaa 3603493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 6507964 - 6507904
Alignment:
Q  205 gtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    ||||||||| ||||| |||| | ||||||| || ||||||||||| |||||||||||||||    
T  6507964 gtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 6507904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 264
Target Start/End: Original strand, 18122716 - 18122870
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtt--ta 209  Q
    |||||||||||| | ||||||||| |||||||||||  ||| ||||| |||||  |||| || ||||||| |||||  ||||||||| ||   |||  ||    
T  18122716 ttttctaactctcgggtggagtttattaggcgacaaatcaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttata 18122815  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
    || || |||| |||||||||||||| ||   ||||| ||| ||||| ||||||||    
T  18122816 ttatgctatacccaattatattgaatcttcaattataaatgaaatgctataagca 18122870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 28867774 - 28867727
Alignment:
Q  164 atgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    |||||||| || ||||||||||| |||||||||||||| |||||||||    
T  28867774 atgctcttccacgagaggtcacacctttagctagtcccgccgtttatt 28867727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 264
Target Start/End: Complemental strand, 34696243 - 34696097
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||| | |||||||||| |||| ||||||  || |||||||||||| |||| | | |||||  ||| | | ||||||||| |   ||||||||| |||    
T  34696243 aactctcgggtggagtttgctaggagacaagaaaatgtggttgctcatactctcgaaggagagaccacgtttctagctagtctcgttgtttattttcata 34696144  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
    || || ||| |||||||||| | ||||||||| | ||| ||||||||    
T  34696143 taccccattgtattgaaactttgattattaatgatatgatataagca 34696097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 5e-89; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 32480107 - 32480369
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||||||||||||||| |||||||||| | |||| ||| |||| ||| ||||||| ||||||||||||| ||||| |||||||||||||||||    
T  32480107 acagactctaagttgacagctgaagccttcctttctgccagaaacgacttgtccaaatttggatgcattatttcctcctgtcgttctttgttcagtactt 32480206  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||| | |||||    
T  32480207 tcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagggaggccacgtctttagctagtcccgcagttta 32480306  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttcc 272  Q
    |||| |||||  ||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  32480307 ttttaatatactcaattgtattgaaactcttattattaatgaaatgctataagcatgttttcc 32480369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 3896357 - 3896616
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    |||||||| |||||||||||||| || ||||||| || ||||||| |||| ||||||||||| || |||||||  | | ||||||  |||||||||| ||    
T  3896357 acagactcgaagttgacagctgatgcattcctttctagcaggaacgacttgtccgaatttggttgtattatttaatccagtcatttgttgttcagtaatt 3896456  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
      |||||| ||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||||    
T  3896457 tattttcttactctatgctggagtttgttaggcgacaagccaacgtggttgctcatgcacttgcaagagaggccacgtctttagctagtcccgccgttta 3896556  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    |||||||||| || ||| |||||||||||||||||||||| ||||| |||||||||||||    
T  3896557 ttttgatatacccgattgtattgaaactcttattattaatgaaatgctataagcatgttt 3896616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 64 - 291
Target Start/End: Original strand, 30502452 - 30502677
Alignment:
Q  64 gaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctc 163  Q
    |||||||| ||||||||||||||||||| ||  |||||||  | || ||||||||||||||  |||||||||||||  ||||||| ||||| ||||||||    
T  30502452 gaatttggttgcattatttccttctgtcgtttgttgttcaacaatttcttttctaactctaaggtggagtttgttactcgacaagtcaacgcggttgctc 30502551  T
Q  164 atgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagc 263  Q
    || ||||||||||||||| ||| || |||||||||||| | ||||||||||||||| || ||| |||||||||||||||||||||| |||||||||||||    
T  30502552 atactcttgcaagagaggccacgtccttagctagtcccgcagtttattttgatatacccgattgtattgaaactcttattattaatgaaatgttataagc 30502651  T
Q  264 atgttttccctaaataaataaaaaatca 291  Q
    |||||||||||  ||||| |||||||||    
T  30502652 atgttttccct--ataaaaaaaaaatca 30502677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 3205379 - 3205170
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    |||||||| |||||||||||||| || ||||| | || ||||||| |||| ||||||||||  || || ||||| |  |||| ||  |||||||||| ||    
T  3205379 acagactcaaagttgacagctgatgctttcctctctagcaggaacgacttgtccgaatttgtttgtatcatttcttcttgtcgtttgttgttcagtaatt 3205280  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||| ||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||||    
T  3205279 tcttttctaactttatggtggagtttgttaggcgacaacccaacgtggttgctcatgctcttgcaagagaagccacgtctttagctagtcccgccgttta 3205180  T
Q  210 ttttgatata 219  Q
    ||| ||||||    
T  3205179 tttcgatata 3205170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 112 - 262
Target Start/End: Complemental strand, 24226353 - 24226203
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||  ||||||||    
T  24226353 ttttctagctctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccgacgtttatt 24226254  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataag 262  Q
     ||||||| ||| || |||| ||||||||||||||||| ||||| ||||||    
T  24226253 atgatatacccacttgtatttaaactcttattattaatgaaatgctataag 24226203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 23 - 272
Target Start/End: Original strand, 26016433 - 26016682
Alignment:
Q  23 tgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactc 122  Q
    |||| ||||| ||||| |||  || ||||||| |||| ||| |||||||||| |||||||| | ||||| ||| |||||||||| ||  |||||||||||    
T  26016433 tgaccgctgatgccttgcttgctagcaggaacgacttgtccaaatttggctgtattatttcatcctgtcgttcattgttcagtaatttattttctaactc 26016532  T
Q  123 tagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatcc 222  Q
    ||| ||||||||||||||| |||||| ||| | |||| ||||||| ||| ||||||||  ||| |||||| |||||||  |||  |||||||||||| ||    
T  26016533 tagggtggagtttgttaggagacaagtcaatgcggttactcatgcacttacaagagagaccacgtctttaactagtcctgccggctattttgatataccc 26016632  T
Q  223 aattatattgaaactcttattattaataaaatgttataagcatgttttcc 272  Q
    |||| |||||||  ||||||||||||| ||||| ||||||||| ||||||    
T  26016633 aattgtattgaatatcttattattaatgaaatgctataagcatattttcc 26016682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 36 - 269
Target Start/End: Original strand, 41601351 - 41601584
Alignment:
Q  36 cttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagttt 135  Q
    |||||||| |||  |||||||| | || |||||||| |  |||||||| | ||||| |||||||||  ||| ||  |||||||||||||| |||||||||    
T  41601351 cttcctttctacacggaacaacctgtctgaatttggttctattatttcttcctgtcgttctttgtttcgtaatttattttctaactctagggtggagttt 41601450  T
Q  136 gttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaa 235  Q
    |||||||| |||||||| | ||||| ||||||||||||| |||||| ||||||||||||||||||| | ||||||| ||||||| |||||| ||||||||    
T  41601451 gttaggcggcaagccaaagcggttgttcatgctcttgcacgagaggccacatctttagctagtcccgctgtttattatgatatacccaattgtattgaaa 41601550  T
Q  236 ctcttattattaataaaatgttataagcatgttt 269  Q
    || |||| || | | ||||| |||||||| ||||    
T  41601551 ctattatgatgagtgaaatgctataagcacgttt 41601584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 4646196 - 4645956
Alignment:
Q  14 actctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttcctt 113  Q
    ||||||| || |||| ||| || ||||||| |||||||||| |||| || |||||||| ||||||||||  | ||||| |||||||||  | | ||  ||    
T  4646196 actctaaattaacagttgatgcattcctttctaccaggaacgacttgtctgaatttggttgcattattttttcctgtcgttctttgtttcgcaatttatt 4646097  T
Q  114 ttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatttt 213  Q
    ||||||||||||  |||||||||||| |||||||||||||| ||||  ||||||||||||| |||||||||| ||||||| || |||| ||||||||| |    
T  4646096 ttctaactctaggatggagtttgttaagcgacaagccaacgcggttattcatgctcttgcacgagaggtcacgtctttagttaatcccgccgtttattat 4645997  T
Q  214 gatatatccaattatattgaaactcttattattaataaaat 254  Q
    |||||| | | || |||||||||| ||||||||||| ||||    
T  4645996 gatataccaacttgtattgaaactattattattaatgaaat 4645956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 61 - 271
Target Start/End: Original strand, 15633172 - 15633382
Alignment:
Q  61 tccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttg 160  Q
    ||||||||||||||||||||||| |  |||| ||| ||||||| | |||  ||||| |||||| | |||||||||||||||||||||||||| | |||||    
T  15633172 tccgaatttggctgcattatttcttcttgtcgttcgttgttcactgctttattttccaactctcgggtggagtttgttaggcgacaagccaatgaggttg 15633271  T
Q  161 ctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttata 260  Q
    ||||| ||||||||||||| | ||| |   |||||||||||   ||||| ||||| ||| |||||| |||||||||| ||||||| ||| ||||| ||||    
T  15633272 ctcatactcttgcaagagaagccacgttactagctagtcccgttgtttactttgaaatacccaattgtattgaaactattattatcaatgaaatgctata 15633371  T
Q  261 agcatgttttc 271  Q
    |||||||||||    
T  15633372 agcatgttttc 15633382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 60 - 271
Target Start/End: Complemental strand, 13015161 - 13014950
Alignment:
Q  60 atccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggtt 159  Q
    ||||| |||||||||||||||||| |  |||| ||| ||||||| | |||  ||||| |||||| | ||| |||||||||||||||||||||||| ||||    
T  13015161 atccggatttggctgcattatttcttcttgtctttcattgttcactgctttattttccaactctcgggtgtagtttgttaggcgacaagccaacgaggtt 13015062  T
Q  160 gctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttat 259  Q
    ||||||||||||||||||||   ||| |   ||||||||||    ||||||||||| ||| |||||| |||||||||| ||||||| ||| ||||| |||    
T  13015061 gctcatgctcttgcaagagaatccacgttactagctagtcctgttgtttattttgagatacccaattgtattgaaactattattatcaatgaaatgctat 13014962  T
Q  260 aagcatgttttc 271  Q
    ||||||||||||    
T  13014961 aagcatgttttc 13014950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 8119032 - 8118792
Alignment:
Q  25 acagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactcta 124  Q
    |||| ||| |||||||||| |||  ||||| || |||| |||||||| |  |||||||| |  |||| |||||||| | ||| ||  ||||  |||||||    
T  8119032 acagttgatgccttcctttctacacggaacgacctatctgaatttggttctattatttcttcttgtcgttctttgtaccgtaatttatttttcaactcta 8118933  T
Q  125 gagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaa 224  Q
    | ||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||| ||| ||||||||||||||| | || |||| ||||||| ||||    
T  8118932 gggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgatatacccaa 8118833  T
Q  225 ttatattgaaactcttattattaataaaatgttataagcat 265  Q
    || |||||| ||| |||| || ||| ||||| |||||||||    
T  8118832 ttgtattgagactattatgatcaatgaaatgctataagcat 8118792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 112 - 265
Target Start/End: Complemental strand, 47081798 - 47081645
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    ||||| |||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||| ||| ||||||||||||||| | || ||||    
T  47081798 ttttccaactctagggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctatt 47081699  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
     ||||||| |||||| |||||| ||| |||| || ||| ||||| |||||||||    
T  47081698 atgatatacccaattgtattgagactattatgatcaatgaaatgctataagcat 47081645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 111 - 269
Target Start/End: Complemental strand, 17238820 - 17238662
Alignment:
Q  111 cttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttat 210  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||| | |||||  ||| |||||||| |  |||||    
T  17238820 cttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacattcttaactagtcccactatttat 17238721  T
Q  211 tttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    | ||||||| || | | ||||||| |  | ||||| ||| ||||| |||||||||||||    
T  17238720 tatgatatacccgaatgtattgaatccttaattatcaatgaaatgctataagcatgttt 17238662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 98 - 277
Target Start/End: Complemental strand, 33611193 - 33611014
Alignment:
Q  98 tgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctag 197  Q
    |||||||| ||| |||| | |||||||| ||||||||||||||||||||||| |||  ||||| ||||| ||||||| |||| | ||  |   ||||| |    
T  33611193 tgttcagttctttctttaccaactctagggtggagtttgttaggcgacaagcaaacagggttgttcatgttcttgcaggagatgccatgttactagctgg 33611094  T
Q  198 tccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttccctaaa 277  Q
    ||||   ||||||||| ||||| || ||| ||||||| |||||||||||||||||||| ||||||||| |||||| ||||    
T  33611093 tcccgttgtttattttcatatacccgattgtattgaacctcttattattaataaaatgctataagcatattttccttaaa 33611014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 27458132 - 27458289
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    |||||||||||||| ||||||||| ||||| |||||||||||| ||||||| | |||||||| ||||| | ||| || ||||||||  ||   |||||||    
T  27458132 ttttctaactctagggtggagtttattaggagacaagccaacgaggttgctaacgctcttgctagagatgccacgtccttagctagctccgtagtttatt 27458231  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
     ||| ||| |||||| ||||||| |  ||||||||||| || || | |||||||||||    
T  27458232 atgacatacccaattgtattgaatccattattattaatgaattgctttaagcatgttt 27458289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 118 - 265
Target Start/End: Original strand, 48770112 - 48770259
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| ||||||||| || ||||| |||| || | ||||||||||| ||| ||| |||| | |||||    |||||||||| || |||||||| |||    
T  48770112 aactctagggtggagtttattcggcgagaagctaatgaggttgctcatgttctcgcaggagaagccacattacaagctagtcccaccatttattttcata 48770211  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    || || | | |||||||||||||||||||||| ||||| |||||||||    
T  48770212 tacccgaatgtattgaaactcttattattaatgaaatgctataagcat 48770259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 265
Target Start/End: Complemental strand, 48100880 - 48100733
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| |||||||||| |||||||||||| || |||||||||||||  |||||| ||||   ||| | | ||| |||||||   |||||||||  ||    
T  48100880 aactctagggtggagtttgctaggcgacaagcaaatgtggttgctcatgtgcttgcaggagaatccacgtttctagttagtcccgttgtttattttagta 48100781  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    ||||  ||| |||||||  ||||||||||||| ||||| |||||||||    
T  48100780 tatctgattgtattgaatatcttattattaatgaaatgctataagcat 48100733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 44435540 - 44435595
Alignment:
Q  206 tttattttgatatatccaattatattgaaactcttattattaataaaatgttataa 261  Q
    |||||||| |||||||| | | ||||||| ||||||||||||||||||||||||||    
T  44435540 tttattttaatatatccgaatgtattgaatctcttattattaataaaatgttataa 44435595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 264
Target Start/End: Complemental strand, 30622636 - 30622490
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||| | |||||||| || |||||||||||  | ||||| ||||||  |||||||||||||| |||||  ||||||| ||||     ||||| || ||    
T  30622636 aactctcgggtggagttcgtcaggcgacaagcatatgtggtagctcataatcttgcaagagaggccacattattagctaatcccgtttcttattatgcta 30622537  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
    || |||||| ||||||| || | || || ||||||||| ||||||||    
T  30622536 tacccaattgtattgaatctttgatcatcaataaaatgctataagca 30622490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 27810574 - 27810683
Alignment:
Q  156 ggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatg 255  Q
    |||||||||||| |||||| | |||| |||||   | ||||||| | | ||||||||| ||||| ||| || |||||||||| ||||||| ||| ||||     
T  27810574 ggttgctcatgcacttgcaggggaggccacattccttgctagtctcgctgtttattttaatatacccagttgtattgaaactattattataaatgaaatt 27810673  T
Q  256 ttataagcat 265  Q
     |||||||||    
T  27810674 ctataagcat 27810683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 7e-88; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 17790044 - 17790304
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||| ||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||    
T  17790044 acagactctaagttgacagctgaagccttcctttctactagaaacgacttatctgaatttggatgcattatttcctcctgtcgttctttgttcagtactt 17790143  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||   |||||||    
T  17790144 tcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgttta 17790243  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgtttt 270  Q
    |||| ||||| |||||| |||||||||||||||||| ||| ||||| ||||||||||||||    
T  17790244 ttttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcatgtttt 17790304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 19098486 - 19098746
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||| ||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||    
T  19098486 acagactctaagttgacagctgaagccttcctttctactagaaacgacttatctgaatttggatgcattatttcctcctgtcgttctttgttcagtactt 19098585  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||   |||||||    
T  19098586 tcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgttta 19098685  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgtttt 270  Q
    |||| ||||| |||||| |||||||||||||||||| ||| ||||| ||||||||||||||    
T  19098686 ttttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcatgtttt 19098746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 10 - 268
Target Start/End: Complemental strand, 6006283 - 6006025
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||||||||||||||| |||||||||| ||| || ||| |||| |||||| |||| |||||||||||||  |||| |||||||||||||||||    
T  6006283 acagactctaagttgacagctgaagccttcctttctactagaaacgacttgtccgaacttggatgcattatttcctcatgtcgttctttgttcagtactt 6006184  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || | ||| ||||||||||||||| |||||||    
T  6006183 tcttttctaactctagggtggagtttgttaggcgacaagccaacgtggtttctcatgctcttgcaagggaagccacgtctttagctagtcccgccgttta 6006084  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgtt 268  Q
    |||| ||||| |||||| |||||||||||||||||| ||| ||||| ||||||||||||    
T  6006083 ttttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcatgtt 6006025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 31228130 - 31228408
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    |||||||||||||||||| |||| |||||||||| ||| || ||| |||| ||||||||||| ||||||||||||| | ||| |||||| ||||||||||    
T  31228130 acagactctaagttgacaactgaagccttcctttctactagaaacgacttgtccgaatttggatgcattatttcctcccgtcgttctttattcagtactt 31228229  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |||||||||| |||| | |||||    
T  31228230 tcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaatggaggccacgtctttagctaatcccgcagttta 31228329  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttccctaaataaataaaaaa 288  Q
    |||| |||||| ||||| |||||||||||||||||| ||| ||||| |||||||||||||||| |||| ||| ||||||    
T  31228330 ttttaatatattcaattgtattgaaactcttattataaatgaaatgctataagcatgttttccttaaaaaaaaaaaaaa 31228408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 53437428 - 53437686
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    |||||||| || || |||| ||| |||||||||| || ||||||| |||| ||||||||||| |||||||||||||  || | ||| |||||||| ||||    
T  53437428 acagactcaaaattaacagttgatgccttcctttctagcaggaacgacttgtccgaatttggttgcattatttcctcttgccgttcgttgttcagcactt 53437527  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
     ||||||||||||||| ||||||||||||||| |||||| ||| | | |||||||||||||||||||||| | |||||||||||||||||     |||||    
T  53437528 tcttttctaactctagggtggagtttgttaggagacaagtcaatgcgattgctcatgctcttgcaagagaagccacatctttagctagtcgtgtagttta 53437627  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    ||||||||| ||  |||||||||||||||||||||||||| ||||| |||||||||||||    
T  53437628 ttttgatat-tctgattatattgaaactcttattattaatgaaatgctataagcatgttt 53437686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 34 - 269
Target Start/End: Original strand, 53394751 - 53394985
Alignment:
Q  34 gccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagt 133  Q
    |||||||||| || ||||||  |||| ||||||||||| |||||||||||||  |||| ||| |||||||| | || ||||||||||||||| |||||||    
T  53394751 gccttcctttctagcaggaatgacttgtccgaatttggttgcattatttcctcttgtcgttcgttgttcagcagtttcttttctaactctagggtggagt 53394850  T
Q  134 ttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattga 233  Q
    || ||||| ||||||  || | |||||||||||||||||||||||| | ||| |||||||||||||   | |||||||||||||| ||  ||||||||||    
T  53394851 tttttaggagacaagtgaatgcggttgctcatgctcttgcaagagaagccacgtctttagctagtcgtgcagtttattttgatat-tctgattatattga 53394949  T
Q  234 aactcttattattaataaaatgttataagcatgttt 269  Q
    |||||||||||||||| ||||| |||||||||||||    
T  53394950 aactcttattattaatgaaatgctataagcatgttt 53394985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 19603167 - 19602910
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    |||||||| |||||||||||||| || ||||| | || | ||||||||||||||||||||||||| || ||||  |  |||| |||  | ||||||| ||    
T  19603167 acagactcgaagttgacagctgatgctttcctctttagccggaacaacttatccgaatttggctgtatcattttttcttgtcgttcgcttttcagtaatt 19603068  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
      |||||||||||||| ||||||||||||||| |||||| ||||| |||||||||| ||||||||||||| |  || | |||||||||||||  | ||||    
T  19603067 tattttctaactctagggtggagtttgttaggtgacaaggcaacgcggttgctcatactcttgcaagagaagcgacgtttttagctagtcccagcattta 19602968  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgt 267  Q
    ||| ||||||||| ||| |||| || |||||||||||||| ||||| |||||||||||    
T  19602967 tttcgatatatccgattgtatttaatctcttattattaatgaaatgctataagcatgt 19602910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 31973390 - 31973651
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||| || |||| ||| |||||||||  |||  ||||| |||| || ||||||||||  |||||  | |  |||| |||||||||  ||| ||    
T  31973390 acagactctaaattaacagttgatgccttccttgctacacggaacgacttgtctgaatttggctctattatgacttcttgtcgttctttgtttcgtaatt 31973489  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
      |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||| |||||||    
T  31973490 tattttctaactctatggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggccacgtctttagctagtcccgccgttta 31973589  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttc 271  Q
    || ||||||| |||||| ||||||| || | || |||||| ||||| | |||||| ||||||    
T  31973590 ttatgatatacccaattgtattgaatctttaatgattaatgaaatgctctaagcacgttttc 31973651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 31935132 - 31935391
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||| || |||| ||| |||||||||  |||  ||||| |||| || ||||||||||  |||||  | |  |||| |||||||||  ||| ||    
T  31935132 acagactctaaattaacagttgatgccttccttgctacacggaacgacttgtctgaatttggctctattatgacttcttgtcgttctttgtttcgtaatt 31935231  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
      |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| |||||| ||| ||||||||||||||| |||||||    
T  31935232 tattttctaactctagggtggagtttgttaggcgacaagccaacgcagttgctcatgctcttgcacgagaggccacgtctttagctagtcccgccgttta 31935331  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    || ||||||| |||||| ||||||| || | || |||||| ||||| | |||||| ||||    
T  31935332 ttatgatatacccaattgtattgaatctttgatgattaatgaaatgctctaagcacgttt 31935391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 31809156 - 31809313
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    ||||| |||||||| |||||||||||||||||||||||||||| ||| |||||| |||||||| |||||| ||| ||||||||||||||| |||||||||    
T  31809156 ttttccaactctagggtggagtttgttaggcgacaagccaacgcggtggctcatcctcttgcacgagaggccacgtctttagctagtcccgccgtttatt 31809255  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
     |||||||||||||| |||||| ||| |||| |||||| ||||| ||||| |||||||    
T  31809256 atgatatatccaattgtattgagactattataattaatgaaatgctataaacatgttt 31809313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 60 - 271
Target Start/End: Complemental strand, 16739628 - 16739417
Alignment:
Q  60 atccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggtt 159  Q
    |||||||||||||||||||||||| |  |||| ||| ||||||| |||||  ||||| |||||| | ||||||||||||||||||||| |||||| | ||    
T  16739628 atccgaatttggctgcattatttcttcttgtcgttcgttgttcactactttattttccaactctcgggtggagtttgttaggcgacaaaccaacgagatt 16739529  T
Q  160 gctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttat 259  Q
    ||| |||||||||||||||| | ||| |   |||||||||||   ||||||||||| ||| |||||| |||||||||| ||||||| ||| ||||| |||    
T  16739528 gctaatgctcttgcaagagaagccacgttactagctagtcccgttgtttattttgagatacccaattgtattgaaactattattatcaatgaaatgctat 16739429  T
Q  260 aagcatgttttc 271  Q
    ||||||||||||    
T  16739428 aagcatgttttc 16739417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 31661221 - 31660997
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||| || |||| ||| |||||||||  |||  ||||| | || || ||||||||||  |||||  | |  |||| |||||||||  ||| ||    
T  31661221 acagactctaaattaacagttgatgccttccttgctacatggaacgagttgtctgaatttggctctattatgacttcttgtcgttctttgtttcgtaatt 31661122  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
      |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||| |||||||| |||||||    
T  31661121 tattttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaggtcacttttttatctagtcccgccgttta 31661022  T
Q  210 ttttgatatatccaattatattgaa 234  Q
    || ||||||| |||||| |||||||    
T  31661021 ttatgatatacccaattgtattgaa 31660997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 8565921 - 8566161
Alignment:
Q  25 acagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactcta 124  Q
    |||| ||| |||||||| | |||  ||||| || |||| |||||||| |  |||||||| |  |||| |||||||| | ||| ||  ||||| |||||||    
T  8565921 acagttgatgccttcctctctacacggaacgacctatctgaatttggttctattatttcttcttgtcgttctttgtaccgtaatttattttccaactcta 8566020  T
Q  125 gagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaa 224  Q
    | ||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||| ||| ||||||||||||||| | || |||| ||||||| ||||    
T  8566021 gggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgatatacccaa 8566120  T
Q  225 ttatattgaaactcttattattaataaaatgttataagcat 265  Q
    || |||||| ||| |||| || ||| ||||| |||||||||    
T  8566121 ttgtattgagactattatgatcaatgaaatgctataagcat 8566161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 29373098 - 29372946
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    ||||||||||||||  | |||||||||||||||||| |||||| |||||| ||||||||| ||||||| ||||| |   ||||||||||    |||||||    
T  29373098 ttttctaactctaggatagagtttgttaggcgacaaaccaacgaggttgcccatgctctttcaagagaagtcacgttactagctagtccggttgtttatt 29372999  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
    || || || || | | |||||||||||||||||| ||| ||||| ||||||||    
T  29372998 ttaatttacccgaatgtattgaaactcttattatcaatgaaatgctataagca 29372946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 118 - 270
Target Start/End: Original strand, 49499410 - 49499562
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| |||||||||| |||||||||||| || |||| |||||||| |||||||||||| | ||| | | ||||||||| |    |||||||| | |    
T  49499410 aactctagggtggagtttgctaggcgacaagcaaatgtggctgctcatgttcttgcaagagaagccacgtttctagctagtctcgttatttattttaaca 49499509  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagcatgtttt 270  Q
    ||||| ||| ||||||| |||||||||||||| ||||| ||||| ||| ||||    
T  49499510 tatccgattgtattgaatctcttattattaatgaaatgctataaacatatttt 49499562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 127 - 264
Target Start/End: Complemental strand, 12370916 - 12370779
Alignment:
Q  127 gtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaatt 226  Q
    ||||||||| || |||||||||| || |||||  ||||| |||||||| | |||| ||||| | | ||||||||  |  |||||||| ||||||||||||    
T  12370916 gtggagtttattcggcgacaagctaatgtggtgactcatactcttgcaggggaggccacatttcttgctagtcctgctatttattttcatatatccaatt 12370817  T
Q  227 atattgaaactcttattattaataaaatgttataagca 264  Q
     |||||||||| | |||| |||||||||| ||||||||    
T  12370816 gtattgaaactttgattactaataaaatgctataagca 12370779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 38015208 - 38015135
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcac 185  Q
    |||||||||||||  ||||||||||||||||||||||| |||| ||||||| |||| ||||||||||| |||||    
T  38015208 ttttctaactctatggtggagtttgttaggcgacaagctaacggggttgcttatgcacttgcaagagatgtcac 38015135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 118 - 265
Target Start/End: Original strand, 18357107 - 18357255
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaa-cgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgat 216  Q
    |||||||| ||||||||||||||| || ||||||| || | ||||||||||||||||| |||| | ||| |   |||||| | ||   ||||||||||||    
T  18357107 aactctagggtggagtttgttaggtgataagccaaacgggattgctcatgctcttgcaggagaagccacgttactagctaattccgttgtttattttgat 18357206  T
Q  217 atatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    ||| || | ||||||||| ||||||||||| || ||||| |||||||||    
T  18357207 atacccgaatatattgaatctcttattattcatgaaatgctataagcat 18357255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 18765739 - 18765587
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    |||||||||||| | ||||||||||||||||||||||||||  |||| |||||| |||| || ||||||| |||||   |||||||| ||    ||||||    
T  18765739 ttttctaactctcgggtggagtttgttaggcgacaagccaatttggtagctcatactctcgctagagaggccacattaatagctagtgccgtaatttatt 18765640  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
     || |||| |||||| ||||||| ||  |||||| ||| ||||| ||||||||    
T  18765639 atgttatacccaattgtattgaatcttctattataaatgaaatgctataagca 18765587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 45680204 - 45680113
Alignment:
Q  158 ttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaat 249  Q
    |||||||| ||||||||||||||| ||||| ||| |||||||||   |||||||||  |||| |||||| |||||| ||| | |||||||||    
T  45680204 ttgctcatactcttgcaagagaggccacattttttgctagtccctttgtttattttcgtatacccaattgtattgagactttgattattaat 45680113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 35906999 - 35906925
Alignment:
Q  191 tagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    ||||||||||| | ||||||||||| ||| |||||| |||||||||| | ||||| ||| ||||| |||||||||    
T  35906999 tagctagtcccgctgtttattttgagatacccaattgtattgaaactatcattatcaatgaaatgctataagcat 35906925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 42626064 - 42626192
Alignment:
Q  137 ttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaac 236  Q
    ||||||||||||| || | ||  ||||||||||| || ||||| |  ||||| ||||||||||||    |||||| || |||  |  ||| |||||||||    
T  42626064 ttaggcgacaagcgaatgcggcggctcatgctctggctagagaagcaacatccttagctagtcccgttatttattatgttatcccacattgtattgaaac 42626163  T
Q  237 tcttattattaataaaatgttataagcat 265  Q
    | ||||||||||||||||| |||||||||    
T  42626164 tattattattaataaaatgctataagcat 42626192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 269
Target Start/End: Original strand, 49644493 - 49644621
Alignment:
Q  141 gcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactctt 240  Q
    |||||||||||||| |||||||||| | ||||||||||| ||||| |  |||  ||||||| |  |||||| ||||||| || | | ||||||| |  |     
T  49644493 gcgacaagccaacgcggttgctcatacacttgcaagagaagtcacgttcttaattagtcccgctatttattatgatatacccgaatgtattgaatcctta 49644592  T
Q  241 attattaataaaatgttataagcatgttt 269  Q
    ||||| ||| ||||| |||||||||||||    
T  49644593 attatcaatgaaatgctataagcatgttt 49644621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 112 - 266
Target Start/End: Complemental strand, 1493388 - 1493234
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  1493388 ttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcaagagaggccacgtctttagctagtcccgccgtttatt 1493289  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcatg 266  Q
    | |||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||    
T  1493288 tcgatatacccaattatattgaaactattattatcaatgaaatgctataagcatg 1493234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 16890103 - 16890361
Alignment:
Q  10 acagactctaagttgacagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtactt 109  Q
    ||||||||||| |||||| |||| |||||||||| | ||||| || |||| || |||||||| ||||||||||| |  |||| ||  |  ||||  ||||    
T  16890103 acagactctaaattgacatctgatgccttcctttcttccaggtacgacttgtctgaatttggttgcattatttcttcttgtctttggtatttcac-actt 16890201  T
Q  110 ccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgttta 209  Q
      |||| ||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||||||| | |||||||||| ||||| || |||||||    
T  16890202 tattttataactctagggtggagtttgttaggcgacaaagcaacgcggttgctcatgctcttgcaagagaagccacatctttaactagtaccgccgttta 16890301  T
Q  210 ttttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttt 269  Q
    |||||||||| |||||| | ||||||||||| |||||||| |||||  ||||||||||||    
T  16890302 ttttgatatacccaattgttttgaaactcttgttattaatgaaatgcaataagcatgttt 16890361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 9959134 - 9959373
Alignment:
Q  25 acagctgacgccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactcta 124  Q
    |||| ||| |||||||||| |||  ||||| || | || |||||||| |  |||||||| |  |||| |||||||||| ||| ||  | |||||||||||    
T  9959134 acagttgatgccttcctttctacacggaacgacctgtctgaatttggttctattatttcttcttgtcgttctttgttccgtaatttatattctaactcta 9959233  T
Q  125 gagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaa 224  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||| ||||||||||||||| ||||||||| ||||||| ||||    
T  9959234 gggtggagtttgttaggcgacaagccaacgcggttgctcatgctcttgcacgagaactcacgtctttagctagtcccgccgtttattatgatatacccaa 9959333  T
Q  225 ttatattgaaactcttattattaataaaatgttataagca 264  Q
    || |||||| ||| |||| |||||| ||||| ||||||||    
T  9959334 ttgtattgagactattatgattaatgaaatgctataagca 9959373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 62 - 269
Target Start/End: Complemental strand, 34355940 - 34355733
Alignment:
Q  62 ccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgc 161  Q
    |||||||||| ||||||||||| |  |||| ||||||||| | | |||  |||| ||||||||| ||| ||||||||| |||| ||||||||| ||||||    
T  34355940 ccgaatttggttgcattatttcttcttgtcgttctttgtttacttctttattttttaactctagggtgaagtttgttatgcgaaaagccaacgaggttgc 34355841  T
Q  162 tcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattgaaactcttattattaataaaatgttataa 261  Q
    ||||||||||||||||||   ||  |   ||||||||||| | ||||||||||||||| |||||| |||||||||||||||||| ||| ||||| |||||    
T  34355840 tcatgctcttgcaagagaaaccatgttactagctagtcccgctgtttattttgatatacccaattgtattgaaactcttattatcaatgaaatgctataa 34355741  T
Q  262 gcatgttt 269  Q
    ||||||||    
T  34355740 gcatgttt 34355733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 34 - 272
Target Start/End: Original strand, 31029044 - 31029282
Alignment:
Q  34 gccttcctttataccaggaacaacttatccgaatttggctgcattatttccttctgtcattctttgttcagtacttccttttctaactctagagtggagt 133  Q
    |||||||||| |||  ||||| || | || |||||||| |  |||||||| |  |||| |||||||| | ||| ||  ||||| |||||||| |||||||    
T  31029044 gccttcctttctacacggaacgacctttctgaatttggttctattatttcttcttgtcgttctttgtaccgtaatttattttccaactctagggtggagt 31029143  T
Q  134 ttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatatccaattatattga 233  Q
    |||||||||||||||| |||  ||| |||||| |||||||| |||||| ||| || |||||||||||| | || |||| ||||||| |||||| ||||||    
T  31029144 ttgttaggcgacaagctaacacggtggctcatactcttgcacgagaggccacgtccttagctagtcccgctgtctattatgatatacccaattgtattga 31029243  T
Q  234 aactcttattattaataaaatgttataagcatgttttcc 272  Q
     ||| |||| || ||| ||||| ||||||||| ||||||    
T  31029244 gactattatgatcaatgaaatgctataagcatcttttcc 31029282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 13825465 - 13825538
Alignment:
Q  111 cttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtca 184  Q
    ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||    
T  13825465 cttttctaactttagtgtggagtttgttaggcgacaagccaacgcggttgctcatgtacttgcaagagaagtca 13825538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 118 - 264
Target Start/End: Complemental strand, 30141078 - 30140932
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| ||||||||||||||||||||||| || ||||| | |||  |||||||||  || | ||||| | | ||||||||| |  | |||||| |||    
T  30141078 aactctagggtggagtttgttaggcgacaagctaatgtggtggatcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcata 30140979  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
    || |||||| |||||||||| | ||||||||| ||||| ||||||||    
T  30140978 tacccaattgtattgaaactttgattattaatgaaatgctataagca 30140932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 118 - 258
Target Start/End: Original strand, 16416601 - 16416741
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| ||| ||||||||||||||||||  || | |||||||| |  ||||||| |||| |||||||   ||||||||| |    |||||||| |||    
T  16416601 aactctagggtgtagtttgttaggcgacaagtaaatgaggttgctcgtattcttgcaggagatgtcacattactagctagtctcattatttattttcata 16416700  T
Q  218 tatccaattatattgaaactcttattattaataaaatgtta 258  Q
    || |||||| ||||||| |||||||||||||| ||||||||    
T  16416701 tacccaattgtattgaacctcttattattaatgaaatgtta 16416741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 10910523 - 10910591
Alignment:
Q  111 cttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagaga 179  Q
    ||||||||||| ||| ||||||||||||||| ||||| | |||  ||||||||||||||||||||||||    
T  10910523 cttttctaactttagggtggagtttgttaggtgacaaactaacacggttgctcatgctcttgcaagaga 10910591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 23508987 - 23508843
Alignment:
Q  121 tctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgatatat 220  Q
    ||||| ||||||||||||||||||||||| || | ||||||||||| ||||||| |||| | |||||    ||||||||||   ||||| ||| | |||     
T  23508987 tctagggtggagtttgttaggcgacaagcaaatggggttgctcatgttcttgcaggagaagccacattacgagctagtcccgttgtttaatttcacatac 23508888  T
Q  221 ccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    |  ||| ||||||| |||||||||||||| |||||  ||||||||    
T  23508887 ctgattgtattgaacctcttattattaatgaaatgcaataagcat 23508843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 30588968 - 30589036
Alignment:
Q  111 cttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagaga 179  Q
    ||||||||||||||| |||||||||||    ||||| ||||||  ||||||||||||||||||||||||    
T  30588968 cttttctaactctagggtggagtttgtcctacgacatgccaacacggttgctcatgctcttgcaagaga 30589036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 17752411 - 17752260
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    |||||||||||| | |||||||||||| ||| ||||||||| ||||| |||||  |||| || | ||||| |||||  ||||||||| ||   |||||||    
T  17752411 ttttctaactctcgggtggagtttgtttggcaacaagccaatgtggtagctcactctctcgctacagaggccacattattagctagtgccgtagtttatt 17752312  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagc 263  Q
     || |||| |||||| ||||||| ||   ||||| ||| ||||| |||||||    
T  17752311 atgttatacccaattgtattgaatcttcgattataaatgaaatgctataagc 17752260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 13768240 - 13768300
Alignment:
Q  205 gtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    ||||||||| ||||| || ||| ||||||| |||||||||||||| ||||| |||||||||    
T  13768240 gtttatttttatatacccgattgtattgaatctcttattattaatcaaatgctataagcat 13768300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 10910965 - 10911044
Alignment:
Q  208 tattttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttccctaaataaataaaaa 287  Q
    |||| ||||||| || ||| ||||||| || | ||||| ||| ||||| ||||||||||||||||||||| ||| |||||    
T  10910965 tattatgatatacccgattgtattgaatctttaattatcaatgaaatgatataagcatgttttccctaaaaaaaaaaaaa 10911044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 187123 - 187172
Alignment:
Q  206 tttattttgatatatccaattatattgaaactcttattattaataaaatg 255  Q
    |||||||| | |||||||||| ||||||| |||||||||||||| |||||    
T  187123 tttattttaacatatccaattgtattgaatctcttattattaatgaaatg 187172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 98; Significance: 7e-48; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 111 - 272
Target Start/End: Complemental strand, 62635 - 62474
Alignment:
Q  111 cttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttat 210  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | ||  ||| ||| ||||||||||||||| | ||||||    
T  62635 cttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcattctctttctaggtaggccacttctttagctagtcccgctgtttat 62536  T
Q  211 tttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttcc 272  Q
    ||| |||||  ||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  62535 tttaatatactcaattgtattgaaactcttattattaatgaaatgctataagcatgttttcc 62474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0789 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 112 - 282
Target Start/End: Complemental strand, 4362 - 4193
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttatt 211  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| ||||| || ||| ||||||||||||||||||| || |||| |    
T  4362 ttttctaactctagggtggagtttgttaggcgacaagccaaagaggttgctcatgctattgcacgaaaggccacatctttagctagtcccgccatttaat 4263  T
Q  212 ttgatatatccaattatattgaaactcttattattaataaaatgttataagcatgttttccctaaataaat 282  Q
     ||||||| ||| || |||||||||| ||||||| ||| ||||| |||||||| | |||||||||| ||||    
T  4262 atgatatacccacttgtattgaaactattattatcaatgaaatgctataagcacg-tttccctaaaaaaat 4193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 191151 - 191085
Alignment:
Q  111 cttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaaga 177  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  191151 cttttctaactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaaga 191085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 1048 - 1194
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||||| ||||||||||||||||||||| | || ||||| |||||   |||| |||| || | ||||| | | ||||||||| |  |||||||| |||    
T  1048 aactctagggtggagtttgttaggcgacaaactaatgtggtggctcacaatcttacaagggaagccacatttctcgctagtcccgctatttattttcata 1147  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataagca 264  Q
    || |||||| |||||||  | | ||||||||| ||||| ||||||||    
T  1148 tacccaattgtattgaatgtttgattattaatgaaatgctataagca 1194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 14191 - 14243
Alignment:
Q  112 ttttctaactctagagtggagtttgttaggcgacaagccaacgtggttgctca 164  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||| |||||    
T  14191 ttttctaactctcgggtggagtttgttaggcgacaagccaatgtggtagctca 14243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 1989 - 1929
Alignment:
Q  205 gtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    ||||||||| ||||| |||| | ||||||| || ||||||||||| |||||||||||||||    
T  1989 gtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 1929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 9645 - 9585
Alignment:
Q  205 gtttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    ||||||||| ||||| |||| | ||||||| || ||||||||||| |||||||||||||||    
T  9645 gtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 9585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 21874 - 21815
Alignment:
Q  206 tttattttgatatatccaattatattgaaactcttattattaataaaatgttataagcat 265  Q
    |||||||| ||||  |||||| ||||||| |||||||||| ||| |||||||||||||||    
T  21874 tttatttttatatccccaattgtattgaatctcttattataaatgaaatgttataagcat 21815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 73478 - 73335
Alignment:
Q  118 aactctagagtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagagaggtcacatctttagctagtccccccgtttattttgata 217  Q
    |||||| | |||||||||| || | ||||||| || ||||||||| || | || ||| |||||  ||| | | |||||||||||   ||||| ||| |||    
T  73478 aactctcgggtggagtttgctaagagacaagcaaatgtggttgctgatacactcgcaggagagaccacgtttctagctagtcccgttgtttacttttata 73379  T
Q  218 tatccaattatattgaaactcttattattaataaaatgttataa 261  Q
    || |||||| |||||||||| | ||||||||| | |||||||||    
T  73378 tacccaattgtattgaaactttgattattaatgatatgttataa 73335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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