View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156-INSERTION13 (Length: 383)
Name: NF0156-INSERTION13
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156-INSERTION13 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 189 - 383
Target Start/End: Complemental strand, 35037438 - 35037240
Alignment:
| Q |
189 |
aacatgcatgcacaatctaaaaccaatctaatataaaaccaatgtattactcaattcttcatcc-----atttctattatagatttgtatatatacgatc |
283 |
Q |
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| T |
35037438 |
aacatgcatgcacaatctaaaaccaatctaatataaaaccaatgtattactcaattcttcatccatttaatttctattatagatttgtatatatacgatc |
35037339 |
T |
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| Q |
284 |
attaaatagtcnnnnnnnnnnngtttacaagattattaaatagtctattacaacaacgaatatttaatcactaaatatattagactatttgaaaataatg |
383 |
Q |
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| T |
35037338 |
attaaatagtc-ttttttttttgtttacacgattattcaatagtctattacaacaacgaatatttaatcgctaaatatattagactatttgaaaataatg |
35037240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 35037576 - 35037469
Alignment:
| Q |
86 |
taatatgaacaatctggttcacctggatgctgtggataagattcagaatctattgtttcacctacctcaatttaatcatctacagtgagcctgaaacaaa |
185 |
Q |
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| T |
35037576 |
taatatgaacaatctggttcacctggatgctgtggataagattcagaatctattgtttcacctacctcaatttaatcatctacaatgagcctgaaacaaa |
35037477 |
T |
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| Q |
186 |
agcaacat |
193 |
Q |
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|||||||| |
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| T |
35037476 |
agcaacat |
35037469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 35037717 - 35037638
Alignment:
| Q |
8 |
aactagaggaataaattatgtattaagtatcaacataactaataagaacaaaatatgtagaaatacattgtacgttacta |
87 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35037717 |
aactagaggaataaattatgtattaagtatcaacataactaataagaacaaaatatgtaaaaatacattgtacgttacta |
35037638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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