View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0156-INSERTION14 (Length: 187)

Name: NF0156-INSERTION14
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0156-INSERTION14
NF0156-INSERTION14
[»] chr1 (3 HSPs)
chr1 (8-187)||(25424217-25424396)
chr1 (82-125)||(29682219-29682262)
chr1 (38-110)||(22657036-22657104)
[»] chr8 (1 HSPs)
chr8 (24-125)||(24031857-24031954)
[»] chr5 (1 HSPs)
chr5 (24-125)||(22304547-22304644)
[»] chr2 (1 HSPs)
chr2 (24-125)||(22805134-22805231)
[»] chr4 (3 HSPs)
chr4 (24-125)||(30143016-30143113)
chr4 (24-125)||(19802979-19803076)
chr4 (126-180)||(5523658-5523713)
[»] chr3 (1 HSPs)
chr3 (24-125)||(30741596-30741693)
[»] chr7 (2 HSPs)
chr7 (82-125)||(47142760-47142803)
chr7 (67-125)||(20070084-20070142)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 7e-88; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 25424396 - 25424217
Alignment:
Q  8 cttgttattggcgcgcaattgttaaataaaaaatcttcgagagacgaccaaggttaactaactaccttgcactacttgttttaaaatacttatttttgat 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25424396 cttgttattggcgcgcaattgttaaatcaaaaatcttcgagagacgaccaaggttaactaactaccttgtactacttgttttaaaatacttatttttgat 25424297  T
Q  108 cgtgcacgacaacgatcattgtatgaaaacttttttgaaccataaagtaagagagttgatgacaaatcaaaatgctcatt 187  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25424296 cgtgcacgacaatgatcattgtatgaaaacttttttgaaccagaaagtaagagagttgatgacaaatcaaaatgctcatt 25424217  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 29682262 - 29682219
Alignment:
Q  82 cttgttttaaaatacttatttttgatcgtgcacgacaacgatca 125  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  29682262 cttgttttaaaatacttatttttgatcgcgtacgacaacgatca 29682219  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 22657036 - 22657104
Alignment:
Q  38 aaatcttcgagagacgaccaaggttaactaactaccttgcactacttgttttaaaatacttatttttgatcgt 110  Q
    ||||||| ||||| ||||||||||||||    |||||||  |||||||||||||||||||||| ||| |||||    
T  22657036 aaatctttgagagtcgaccaaggttaac----taccttgtgctacttgttttaaaatacttatcttttatcgt 22657104  T

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Target: chr8 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 24031857 - 24031954
Alignment:
Q  24 aattgttaaataaaaaatcttcgagagacgaccaaggttaactaactaccttgcactacttgttttaaaatacttatttttgatcgtgcacgacaacgat 123  Q
    ||||||||||||||||||| |||||||| |||||||||||||    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24031857 aattgttaaataaaaaatcctcgagagaagaccaaggttaac----taccttgtactacttgttttaaaatacttatttttgatcgtgcacgacaacgat 24031952  T

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Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 22304547 - 22304644
Alignment:
Q  24 aattgttaaataaaaaatcttcgagagacgaccaaggttaactaactaccttgcactacttgttttaaaatacttatttttgatcgtgcacgacaacgat 123  Q
    ||||| ||||| | ||||| ||||||||| ||||||||||||    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  22304547 aattgctaaatcagaaatcctcgagagacaaccaaggttaac----taccttgtactacttgttttaaaatacttatttttgatcgtccacgacaacgat 22304642  T

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Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 22805231 - 22805134
Alignment:
Q  24 aattgttaaataaaaaatcttcgagagacgaccaaggttaactaactaccttgcactacttgttttaaaatacttatttttgatcgtgcacgacaacgat 123  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||    ||||| ||||||||||||||||||||||  ||||||||||||| ||||||||    
T  22805231 aattgttaaatcaaaaatcctcgagagacgaccaagtttaacta----ccttgtactacttgttttaaaatacttaaatttgatcgtgcacaacaacgat 22805136  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 30143016 - 30143113
Alignment:
Q  24 aattgttaaataaaaaatcttcgagagacgaccaaggttaactaactaccttgcactacttgttttaaaatacttatttttgatcgtgcacgacaacgat 123  Q
    ||||| ||||| | ||||| ||||||||||||||||||||||    ||||||| |||||||||||||||||| |||||||| ||||| ||||||| ||||    
T  30143016 aattgctaaatcagaaatcctcgagagacgaccaaggttaac----taccttgtactacttgttttaaaatatttattttttatcgtccacgacatcgat 30143111  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 19802979 - 19803076
Alignment:
Q  24 aattgttaaataaaaaatcttcgagagacgaccaaggttaactaactaccttgcactacttgttttaaaatacttatttttgatcgtgcacgacaacgat 123  Q
    ||||| ||||| | ||||| |||||||| |||||||||||||||    ||||  |||||||||||||||||| |||||||| ||||| ||||||||||||    
T  19802979 aattgctaaatcagaaatcctcgagagatgaccaaggttaacta----ccttctactacttgttttaaaatatttatttttaatcgtccacgacaacgat 19803074  T

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Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 5523658 - 5523713
Alignment:
Q  126 ttgtatgaaaacttttttgaaccataaagtaag-agagttgatgacaaatcaaaat 180  Q
    ||||||||||||||||||| |||| |||||||| | |||  |||||||||||||||    
T  5523658 ttgtatgaaaacttttttgtaccagaaagtaagaaaagtcaatgacaaatcaaaat 5523713  T

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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 30741693 - 30741596
Alignment:
Q  24 aattgttaaataaaaaatcttcgagagacgaccaaggttaactaactaccttgcactacttgttttaaaatacttatttttgatcgtgcacgacaacgat 123  Q
    ||||| ||||| | ||||| ||||||||| ||||||||||||||    ||||| ||||||||||||||||||||||  ||||||||| ||||||||||||    
T  30741693 aattgctaaatcagaaatcctcgagagacaaccaaggttaacta----ccttgtactacttgttttaaaatacttaaatttgatcgtccacgacaacgat 30741598  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 47142803 - 47142760
Alignment:
Q  82 cttgttttaaaatacttatttttgatcgtgcacgacaacgatca 125  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  47142803 cttgttttcaaatacttatttttgatcgcgtacgacaacgatca 47142760  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 20070142 - 20070084
Alignment:
Q  67 aactaccttgcactacttgttttaaaatacttatttttgatcgtgcacgacaacgatca 125  Q
    |||||||||  | ||||||||||| ||||||||||||  ||| ||||||||||||||||    
T  20070142 aactaccttctattacttgttttataatacttattttctatcatgcacgacaacgatca 20070084  T

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