View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0156-INSERTION15 (Length: 718)

Name: NF0156-INSERTION15
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0156-INSERTION15
NF0156-INSERTION15
[»] chr7 (3 HSPs)
chr7 (138-697)||(37639595-37640165)
chr7 (457-711)||(37634049-37634303)
chr7 (8-108)||(37640193-37640293)
[»] scaffold1825 (1 HSPs)
scaffold1825 (457-551)||(1-95)
[»] chr6 (1 HSPs)
chr6 (8-101)||(2157048-2157140)


Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 138 - 697
Target Start/End: Complemental strand, 37640165 - 37639595
Alignment:
Q  138 atattaaaaaattagagtcaaacattttaatccatgtacaccatggtgttgtgttgtgccaaaggtttgctacaccaccacttcta-------------t 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |    
T  37640165 atattaaaaaattagagtcaaacattttaatccatgtacaccatggtgttgtgttgtgccaaaggtttgctacaccaccacttctactatttttacatct 37640066  T
Q  225 ggtcgcgatagtttcagattaaaatattcatggcgttttggaatatgactaaaaaataatgtgaattcgagtcttgagctgaggaagatgatgaacattc 324  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  37640065 ggtcgcaatagtttcagattaaaatattcatggcgttttggaatatggctaaaaaataatgtaaattcgagtcttgaactgaggaagatgatgaacattc 37639966  T
Q  325 tccatatgagtgtttaagtatagggtgtgagtggtaaagtttgagagagattgttcgttgacattatttcttattgctttcatgattagaatgaggtcgt 424  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  37639965 tccatatgagtgtttaagtacagggtgtgagtggtaaagttagagagagattgttcgttgacattatttcctgttgctttcatgactagaatgaggtcgt 37639866  T
Q  425 cgatgaattattgacatgtatgtatatttataattactcgcaattaagttagcaattaattagattgtcctcatcattgctatttgcaacctgaaaaatg 524  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  37639865 cgatgaattattgacatgtatgtatatttatgattactcgcaattaagttatcaattaattagattgtcctcatcattgctatttg-aacctgaaaaatg 37639767  T
Q  525 gaagcctccttatagatttattgtgccggtaaatgtggggtttttaggacatcgacaaaatgtgaccgtttttagatatttgttgttgagtcattaaaag 624  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  37639766 gaagcctccttatagatttattgtgccggtaaatgtggagtttttaggacatcgacaaaatgtgaccg-ttttagatatttgttgttgagtcatt-aaag 37639669  T
Q  625 tttttacgatgctagtattg-atgcaccatcaaaagctgtgcctctagttacgttgaaaaatatggattcatag 697  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37639668 tttttacgatgctagtattgaatacaccatcaaaagttgtgcctctagttacgttgaaaaatatggattcatag 37639595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 457 - 711
Target Start/End: Complemental strand, 37634303 - 37634049
Alignment:
Q  457 attactcgcaattaagttagcaattaattagattgtcctcatcattgctatttgcaacctgaaaaatggaagcctccttatagatttattgtgccggtaa 556  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37634303 attactcgcaattaagttatcaattaattagattgtcctcatcattgctatttgcaacctgaaaaatggaagcctccttatagatttattgtgccagtaa 37634204  T
Q  557 atgtggggtttttaggacatcgacaaaatgtgaccgtttttagatatttgttgttgagtcattaaaagtttttacgatgctagtattg-atgcaccatca 655  Q
    | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  37634203 acgtggagtttttaggacatcgacaaaatgtgaccg-ttttagatatttgttgttgagtcatt-aaagtttttacgatgctagtattgaatgcaccatca 37634106  T
Q  656 aaagctgtgcctctagttacgttgaaaaatatggattcatagagtgg-tatcatcta 711  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  37634105 aaagttgtgcctctagttacattgaaaaatatggattcatagagtggttatcatcta 37634049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 37640293 - 37640193
Alignment:
Q  8 ggaacggccatagccatcaaacaaaacgagagaaatgtgagagagtgagagtgttcagaggtgaatgacaatgcatggggttgtttgtgtttatgtaatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37640293 ggaacggccatagccatcaaacaaaacgagagaaatgtgagagagtgagagtgttcagaggtgaatgacaatgcatggggttgtttgtgtttatgtaatc 37640194  T
Q  108 a 108  Q
    |    
T  37640193 a 37640193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1825 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold1825
Description:

Target: scaffold1825; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 95 - 1
Alignment:
Q  457 attactcgcaattaagttagcaattaattagattgtcctcatcattgctatttgcaacctgaaaaatggaagcctccttatagatttattgtgcc 551  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95 attactcgcaattaagttatcaattaattagattgtcctcatcattgctatttgcaacctgaaaaatggaagcctccttatagatttattgtgcc 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 2157048 - 2157140
Alignment:
Q  8 ggaacggccatagccatcaaacaaaacgagagaaatgtgagagagtgagagtgttcagaggtgaatgacaatgcatggggttgtttgtgtttat 101  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  2157048 ggaacgggcatagccatcaaacaaaacgagagaaacgcgagagagtaagagtgttcagaggtcaatgacaatgcatgggg-tgtttgtgcttat 2157140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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