View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156-INSERTION16 (Length: 591)
Name: NF0156-INSERTION16
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156-INSERTION16 |
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Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Original strand, 49654278 - 49654848
Alignment:
| Q |
8 |
tgttctgcaaatactgaatccaacctcaactctgccaaagacaagggaattgaaaatgctgagaagtgtaacggtaaaagcaagagtactaacacaaaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654278 |
tgttctgcaaatactgaatccaacctcaactctgccaaagacaagggaattgaaaatgctgagaagtgtaacggtaaaagcaagagtactaacacaaaaa |
49654377 |
T |
|
| Q |
108 |
ccagtgctggctcaccggagaaatctccggctggtggtaaggggcaggaaacaaagaacaggagtggtcaaagtggcggaggagattctggtaagaagaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49654378 |
ccagtgctggctcaccggagaaatctccggctggtggtaaggggcaggaaacaaagaacaagagtggtcaaagtggcggaggagattctggtaagaagaa |
49654477 |
T |
|
| Q |
208 |
gatgaagaaaactcagagtggaactggaagcaatgggttgagttcagcatctactggtgcacctgcagacactggagcagaattccagtgtccaggtcag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49654478 |
gatgaagaaaactcagagtggaactggaagcaatgggttgagttcagcatctaccggtgcacctgcacacactggagcagaattccagtgtccaggtcag |
49654577 |
T |
|
| Q |
308 |
gttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaaca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654578 |
gttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaaca |
49654677 |
T |
|
| Q |
408 |
gattatgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654678 |
gattatgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatc |
49654777 |
T |
|
| Q |
508 |
tacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgca |
578 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49654778 |
tacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgca |
49654848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 346 - 570
Target Start/End: Original strand, 16486263 - 16486487
Alignment:
| Q |
346 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
445 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
16486263 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
16486362 |
T |
|
| Q |
446 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaa |
545 |
Q |
| |
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||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
16486363 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaa |
16486462 |
T |
|
| Q |
546 |
atgcaaatgggtgttctattatgtg |
570 |
Q |
| |
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|||||| |||||||||| ||||||| |
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| T |
16486463 |
atgcaagtgggtgttctgttatgtg |
16486487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 346 - 570
Target Start/End: Complemental strand, 21816647 - 21816423
Alignment:
| Q |
346 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
445 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
21816647 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
21816548 |
T |
|
| Q |
446 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaa |
545 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
21816547 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaa |
21816448 |
T |
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| Q |
546 |
atgcaaatgggtgttctattatgtg |
570 |
Q |
| |
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|||||| |||||||||| ||||||| |
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| T |
21816447 |
atgcaagtgggtgttctgttatgtg |
21816423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 571
Target Start/End: Complemental strand, 14381288 - 14381210
Alignment:
| Q |
493 |
ttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtga |
571 |
Q |
| |
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||||||| |||||||| ||| ||| |||| |||||||| || |||||||||||||||| ||| ||||| ||||||||| |
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| T |
14381288 |
ttatcaggttcaatctggaccgttggttccttttgagttatttagtgatgaaaatgcaagtggatgttccattatgtga |
14381210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 348
Target Start/End: Complemental strand, 14381479 - 14381448
Alignment:
| Q |
317 |
caagtgaatctcagccctacacgtcagcaatc |
348 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14381479 |
caagtgaatctcagccctacacgtcagcaatc |
14381448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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