View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0156-INSERTION16 (Length: 591)

Name: NF0156-INSERTION16
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0156-INSERTION16
NF0156-INSERTION16
[»] chr4 (1 HSPs)
chr4 (8-578)||(49654278-49654848)
[»] chr6 (1 HSPs)
chr6 (346-570)||(16486263-16486487)
[»] chr5 (1 HSPs)
chr5 (346-570)||(21816423-21816647)
[»] chr2 (2 HSPs)
chr2 (493-571)||(14381210-14381288)
chr2 (317-348)||(14381448-14381479)


Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Original strand, 49654278 - 49654848
Alignment:
8 tgttctgcaaatactgaatccaacctcaactctgccaaagacaagggaattgaaaatgctgagaagtgtaacggtaaaagcaagagtactaacacaaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
49654278 tgttctgcaaatactgaatccaacctcaactctgccaaagacaagggaattgaaaatgctgagaagtgtaacggtaaaagcaagagtactaacacaaaaa 49654377  T
108 ccagtgctggctcaccggagaaatctccggctggtggtaaggggcaggaaacaaagaacaggagtggtcaaagtggcggaggagattctggtaagaagaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
49654378 ccagtgctggctcaccggagaaatctccggctggtggtaaggggcaggaaacaaagaacaagagtggtcaaagtggcggaggagattctggtaagaagaa 49654477  T
208 gatgaagaaaactcagagtggaactggaagcaatgggttgagttcagcatctactggtgcacctgcagacactggagcagaattccagtgtccaggtcag 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
49654478 gatgaagaaaactcagagtggaactggaagcaatgggttgagttcagcatctaccggtgcacctgcacacactggagcagaattccagtgtccaggtcag 49654577  T
308 gttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaaca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
49654578 gttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaaca 49654677  T
408 gattatgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
49654678 gattatgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatc 49654777  T
508 tacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgca 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
49654778 tacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgca 49654848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 346 - 570
Target Start/End: Original strand, 16486263 - 16486487
Alignment:
346 atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac 445  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||||||||||||||||||||    
16486263 atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac 16486362  T
446 tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaa 545  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
16486363 tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaa 16486462  T
546 atgcaaatgggtgttctattatgtg 570  Q
    |||||| |||||||||| |||||||    
16486463 atgcaagtgggtgttctgttatgtg 16486487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 346 - 570
Target Start/End: Complemental strand, 21816647 - 21816423
Alignment:
346 atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac 445  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||||||||||||||||||||    
21816647 atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac 21816548  T
446 tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaa 545  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
21816547 tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaa 21816448  T
546 atgcaaatgggtgttctattatgtg 570  Q
    |||||| |||||||||| |||||||    
21816447 atgcaagtgggtgttctgttatgtg 21816423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 571
Target Start/End: Complemental strand, 14381288 - 14381210
Alignment:
493 ttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtga 571  Q
    ||||||| ||||||||  ||| ||| |||| |||||||| || |||||||||||||||| ||| ||||| |||||||||    
14381288 ttatcaggttcaatctggaccgttggttccttttgagttatttagtgatgaaaatgcaagtggatgttccattatgtga 14381210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 348
Target Start/End: Complemental strand, 14381479 - 14381448
Alignment:
317 caagtgaatctcagccctacacgtcagcaatc 348  Q
    ||||||||||||||||||||||||||||||||    
14381479 caagtgaatctcagccctacacgtcagcaatc 14381448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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