View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156-INSERTION17 (Length: 661)
Name: NF0156-INSERTION17
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156-INSERTION17 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 449
Target Start/End: Complemental strand, 9226931 - 9226490
Alignment:
| Q |
8 |
gacgaccacttggaaaacatcgttttcattttgatccttctttttggaaatttcttttattattgtttgatagtgcatttggatgtatgttttgtgtcca |
107 |
Q |
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| T |
9226931 |
gacgaccacttggaaaacatcgttttcattttgatccttctttttggaaatttcttttattattgtttgataatgcatttgggtgtatgttttgtgtcca |
9226832 |
T |
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| Q |
108 |
aaataaggaacaaacaaggtccctttgtgaaagttgggaagggtcatgtggtatctatgttcttaaaaatacttcaactgtcaagtgaagttttataatt |
207 |
Q |
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| T |
9226831 |
aaataaggaacaaacaaggtccctttgtgaaagttgggaagggtcatgtggtatctatgttcttaaaaatacttcaactgtcaagtgaagttttataatt |
9226732 |
T |
|
| Q |
208 |
aatttttggtgttgacaaatgaagttttattatgttattgtgttatttcatttggtataaagaattcggataattggttccaatccaaccacgtataaat |
307 |
Q |
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| T |
9226731 |
aatttttggtgttgacaaatgaagttttattatgttattgtgttatttcatttggtataaacaattcggataattggttccaatccaaccacgtataaat |
9226632 |
T |
|
| Q |
308 |
tataactatgttcttttacaattgagttgtccaaaatgtatggaatggttcaagtatatcgaacaatttgatatattcatcaatcaatctcagcttgcat |
407 |
Q |
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| T |
9226631 |
tataactatgttcttttacaattgagttgtccaaaatgtatggaatgattcaagcatattgaacaatttgatatattcatcgatcaatcttagcttgcat |
9226532 |
T |
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| Q |
408 |
ctcaatttgtcaaaagaatttgaaggctccattacgagaagg |
449 |
Q |
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| T |
9226531 |
ctcaatttgtcaaaagaatttgaaggctccattgcgagaagg |
9226490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 544 - 605
Target Start/End: Complemental strand, 9226395 - 9226335
Alignment:
| Q |
544 |
gaaaaatagagagaatttcaacccgcgttttcattctattaaataatagagggactggattg |
605 |
Q |
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| T |
9226395 |
gaaaaatagagagaatttcaacctgtgttttcattctatt-aataatagagggactggattg |
9226335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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