View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0156-INSERTION18 (Length: 264)
Name: NF0156-INSERTION18
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156-INSERTION18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 18233955 - 18233705
Alignment:
| Q |
8 |
aaatattcccactcgaagttcgttctgcggctcaaagtatcaatgtctctgttaacatgatttgcacttttatcattgctcaaatcttcactacaatgct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
18233955 |
aaatattcccactcgaagttcgttctgcggctcaaagtatcaatgtctctgttaacatgatttgcacctttatcattgctcaaattttcactacaatgct |
18233856 |
T |
|
| Q |
108 |
ttgtcacatgaagtttggattatttatcttcttcgcctttttcgttgttgtgatgactggatttatttacaagtttttgccagagacgaagggagttcca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18233855 |
ttgtcacatgaagtttggattatttatcttcttcgcctttttcgttgttgtgatgactggatttatttacaagtttttgccagagacgaagggagttcca |
18233756 |
T |
|
| Q |
208 |
atcgaagaaatgtcaaccgtatgggagaagcatccttattggagtgatttt |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18233755 |
atcgaagaaatgtcaaccgtatgggagaaacatccttattggagtgatttt |
18233705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 41971542 - 41971356
Alignment:
| Q |
34 |
gcggctcaaagtatcaatgtctctgttaacatgatttgcacttttatcattgctcaaatcttcactacaatgctttgtcacatgaagtttggattattta |
133 |
Q |
| |
|
|||||||||||| ||||||| || ||||||||||||| ||| ||| |||||||| | | ||||| || ||| || ||||||||||||||| | || | |
|
|
| T |
41971542 |
gcggctcaaagtgtcaatgtttcggttaacatgattttcacatttgccattgctcgagttttcaccaccatgtcgtgccacatgaagtttggactcttca |
41971443 |
T |
|
| Q |
134 |
tcttcttcgcctttttcgttgttgtgatga-ctggatttatttacaagtttttgccagagacgaagggagttccaatcgaagaaatgt |
220 |
Q |
| |
|
||||||| || ||||| || || ||||||| || | |||||||||||||||||||| ||||| || || ||||| || |||||||||| |
|
|
| T |
41971442 |
tcttctttgcattttttgtggtggtgatgagcttg-tttatttacaagtttttgccggagaccaaaggtgttcctattgaagaaatgt |
41971356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 42552276 - 42552473
Alignment:
| Q |
26 |
ttcgttctgcggctcaaagtatcaatgtctctgttaacatgatttgcacttttatcattgctcaaatcttcactacaatgctttgtcacatgaagtttgg |
125 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
42552276 |
ttcgttctgctgctcaaagcattaatgtctctgttaacatgatttgcacctttgtcattgctcaaattttcactacaatgctttgttacatgaagtttgg |
42552375 |
T |
|
| Q |
126 |
attatttatcttcttcgcctttttcgttgttgtgatgactggatttatttacaagtttttgccagagacgaagggagttccaatcgaagaaatgtcaa |
223 |
Q |
| |
|
||| |||||||||||||||||||| || || ||||||| | ||||||||||||||| | || ||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
42552376 |
attgtttatcttcttcgccttttttctttttctgatgacagcatttatttacaagttccttccggagaccaaggaagttccaattgaagaaatgtcaa |
42552473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 42517681 - 42517468
Alignment:
| Q |
8 |
aaatattcccactcgaagttcgttctgcggctcaaagtatcaatgtctctgttaacatgatttgcacttttatcattgctcaaatcttcactacaatgct |
107 |
Q |
| |
|
|||| |||||||| || || || || || ||||||||| ||||||| |||||||||||||||| ||| ||| |||||||||| | ||||| | ||| | |
|
|
| T |
42517681 |
aaattttcccacttgaggtgcgatcagcagctcaaagtgtcaatgtttctgttaacatgattttcacatttgccattgctcaagttttcaccgccatgtt |
42517582 |
T |
|
| Q |
108 |
ttgtcacatgaagtttggattatttatcttcttcgcctttttcgttgttgtgatga-ctggatttatttacaagtttttgccagagacgaagggagttcc |
206 |
Q |
| |
|
|| ||||||||||||||| |||| |||||||| || ||||| ||||| || |||| || | |||||||||||||||||||| ||||| || || ||||| |
|
|
| T |
42517581 |
gtgccacatgaagtttggactattcatcttctttgcattttttgttgtggttatgagcttg-tttatttacaagtttttgccggagaccaaaggtgttcc |
42517483 |
T |
|
| Q |
207 |
aatcgaagaaatgtc |
221 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
42517482 |
aattgaagaaatgtc |
42517468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 1239054 - 1238850
Alignment:
| Q |
16 |
ccactcgaagttcgttctgcggctcaaagtatcaatgtctctgttaacatgatttgcacttttatcattgctcaaatcttcactacaatgctttgtcaca |
115 |
Q |
| |
|
||||| || ||||| || |||||||||||| ||||||| || ||||||||||||| ||| ||| |||||||||| | ||||| || ||| | || |||| |
|
|
| T |
1239054 |
ccacttgaggttcgatcagcggctcaaagtgtcaatgtttcggttaacatgattttcacatttgccattgctcaagttttcaccaccatgttgtgccaca |
1238955 |
T |
|
| Q |
116 |
tgaagtttggattatttatcttcttcgcctttttcgttgttgtgatga-ctggatttatttacaagtttttgccagagacgaagggagttccaatcgaag |
214 |
Q |
| |
|
||||||||||| | || |||||||| || |||| || || ||||||| || | ||||||||||||||||||| ||||| || || ||||| || |||| |
|
|
| T |
1238954 |
tgaagtttggactcttcatcttctttgcacttttggtggtggtgatgagcttg-tttatttacaagtttttgcaggagaccaaaggtgttcctattgaag |
1238856 |
T |
|
| Q |
215 |
aaatgt |
220 |
Q |
| |
|
|||||| |
|
|
| T |
1238855 |
aaatgt |
1238850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 35922206 - 35922146
Alignment:
| Q |
104 |
tgctttgtcacatgaagtttggattatttatcttcttcgcctttttcgttgttgtgatgac |
164 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||||| ||||| || || || |||||||| |
|
|
| T |
35922206 |
tgctctgtcacatgaagtttggcttgtttatcttctttgccttctttgtagtggtgatgac |
35922146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 869 times since January 2019
Visitors: 1513