View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0156-INSERTION19 (Length: 706)

Name: NF0156-INSERTION19
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0156-INSERTION19
NF0156-INSERTION19
[»] chr1 (1 HSPs)
chr1 (56-706)||(13885255-13885921)


Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 56 - 706
Target Start/End: Complemental strand, 13885921 - 13885255
Alignment:
Q  56 ttgtgtgtaagagcagttttttactatgtcgattgaattgactaccaacaaac--nnnnnnnnnnnnnnnnnttttaaaataatacgactaccacacatt 153  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||                     |||||||||||||||| |||||||||    
T  13885921 ttgtgtgtaagagcagttttttactatgttgattgaattgactaccaacaaacaaaaaaggtaaaaaaaaaaaattaaaataatacgacttccacacatt 13885822  T
Q  154 cacaactctttgttaaagtctctaaatttatcatg-------------agaagttttgtgaactacttcattttaaggaaagttttctcaacttcaaata 240  Q
    |||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13885821 cacaactctttgttaaagtctctaaatttatcatgaggatatattcaaagaagttttgtgaactacttcattttaaggaaagttttctcaacttcaaata 13885722  T
Q  241 atactaaaaagtatgctttcttaacttgtgtcacttcttgtgcacatggtaagtaagagaagccgcttaataagtcccagaagttaacctaaggtacata 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13885721 atactaaaaagtatgctttcttaacttgtgtcacttcttgtgcacatggtaagtaagagaagccgcttaataagtcccagaagttaacctaaggtacata 13885622  T
Q  341 attggcacatgagacacaagaagataatctcatatcacattaaagtccaatccatgcttttgatttggtagatgagaacaaaaagaaagagattaaattg 440  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13885621 attggcacatgagacacaaaaagataatctcatatcacattaaagttcaatccatgcttttgatttggtagatgagaacaaaaagaaagagattaaattg 13885522  T
Q  441 gggaagttaagatgagtttaatgttttaattggattagnnnnnnngtgaaaggaaagaaagcaagaggaatgatcgttaaaggcaagaaatgtggaaatg 540  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13885521 gggaagttaagatgagtttaatgttttaattggattagaaaaaaagtgaaaggaaagaaagcaagatgaatgatcgttaaaggcaagaaatgtggaaatg 13885422  T
Q  541 tagtaagaaatgtggttatgcatttgcaatgtcaatcaaacaatagtgtgtttgtg-tgtgtaatattaatatatttgattatacaacacatttgttatt 639  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13885421 tggcaagaaatgtggttatgcatttgcaatgtcaatcaaacaatagtgtgtttgtgttgtgtaatattaatatatttgattatacaacacatttgttatt 13885322  T
Q  640 cccaaaaagtctattaagaattaacttttttatactgaaaatttattttctatattatgcatcattg 706  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13885321 cccaaaaaatctattaagaattaacttttttatgctgaaaatttattttctatattatgcatcattg 13885255  T

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