View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0156-INSERTION2 (Length: 717)
Name: NF0156-INSERTION2
Description: NF0156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0156-INSERTION2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 419 - 717
Target Start/End: Original strand, 8467380 - 8467678
Alignment:
| Q |
419 |
ctagtatgcttgtgtgcagtgtcagagcttaatttgtgaaaatagcttgttctattttattaataattcatttattatttcatacaatcaccattgtatg |
518 |
Q |
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| T |
8467380 |
ctagtatggttgtgtgcagtgtcagagcttaatttgtgaaaatagcttgttctattttattaataattcatttattatttcatacaatcaccattgtatg |
8467479 |
T |
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| Q |
519 |
catataatccatcttgtttgatgaaaaccctagctagcagctggtttatgttttcctactttcccatgcctttattttctagtaatttattcttggatga |
618 |
Q |
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| T |
8467480 |
catataatccatcttgtttgatgaaaaccctagctagcagctggtttatgttttcctactttcccatgcctttattttctagtaatttattcttggatga |
8467579 |
T |
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| Q |
619 |
agctaggtttacattagaagaggctcatattatatctatggtgatcagatcagcgaggttgggggaaattagttttctatttttctttactttaccaaa |
717 |
Q |
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| T |
8467580 |
ggctaggtttacattagaagaggctcatcttatatctatggtgatcagatcagcgaggttgggggaaattagttttctatttttctttactttaccaaa |
8467678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 8467151 - 8467315
Alignment:
| Q |
186 |
actgtagctttgctgtaggaggtgggcatactgccaacagaccactgttagcttctctttgtaaagccttcctgatatactattttcttatctgatgagc |
285 |
Q |
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| T |
8467151 |
actgtagctttgctgtaggaggtgggcatactgccaacagaccactgttagcttctctttgtaaagccttcctgatatactattttcttatctgatgaac |
8467250 |
T |
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| Q |
286 |
ttgtgcctaactctaactaccacgagagctatcaagcacaaccagctttctgccctaaatcacag |
350 |
Q |
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| T |
8467251 |
ttgtgcctaactctaactaccacgagagctatcaagcacaaccagctttctgccctgaatcacag |
8467315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 8466977 - 8467127
Alignment:
| Q |
8 |
cttattaccttaatgcttcttgtttcatatgttgttgatgattctaccagatatatgtgcacacagatgaatttagcttaa--agatcttgttcatgtgg |
105 |
Q |
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| T |
8466977 |
cttattaccttaatgcttcttgtttcatatgttgttgatgattctaccatatatatgtgcacacagatgaatttagcttaactggatcttgttcatgtgg |
8467076 |
T |
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| Q |
106 |
gcttagcaaagggttgtttacagagtttttttggcattctgtccacctcca |
156 |
Q |
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| T |
8467077 |
gcttagcaaagggttgtttacagagtttttttggcattctgtccacctcca |
8467127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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